Wall clock time and date at job start Tue Mar 31 2020 13:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47170 * 2 1 4 4 C 1.35054 * 117.00107 * 180.02562 * 3 2 1 5 5 O 1.21808 * 120.00108 * 359.97438 * 4 3 2 6 6 C 1.40354 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.36260 * 120.00489 * 179.97438 * 6 4 3 8 8 N 1.37133 * 120.00053 * 179.97438 * 7 6 4 9 9 C 1.38647 * 119.99908 * 273.70445 * 8 7 6 10 10 C 1.39643 * 119.42243 * 5.13216 * 9 8 7 11 11 C 1.36601 * 119.48981 * 180.02562 * 10 9 8 12 12 C 1.41307 * 118.40344 * 359.95633 * 11 10 9 13 13 C 1.41184 * 120.57469 * 180.29702 * 12 11 10 14 14 H 1.07993 * 119.99879 * 149.90330 * 13 12 11 15 15 C 1.39889 * 120.00094 * 329.90335 * 13 12 11 16 16 N 1.30878 * 119.99932 * 165.96358 * 15 13 12 17 17 Si 1.86806 * 120.00080 * 345.95914 * 15 13 12 18 18 H 1.48499 * 109.46787 * 92.20507 * 17 15 13 19 19 H 1.48495 * 109.47276 * 212.20937 * 17 15 13 20 20 H 1.48501 * 109.46828 * 332.21096 * 17 15 13 21 21 C 1.40786 * 118.84638 * 0.02562 * 12 11 10 22 22 C 1.50701 * 119.81609 * 179.97438 * 21 12 11 23 23 N 1.31455 * 120.36443 * 0.02562 * 21 12 11 24 24 O 1.34969 * 119.99548 * 359.97438 * 7 6 4 25 25 C 1.42902 * 116.99611 * 175.57516 * 24 7 6 26 26 C 1.53000 * 109.47121 * 183.96837 * 25 24 7 27 27 H 1.08998 * 109.47210 * 300.00001 * 1 2 3 28 28 H 1.09004 * 109.47238 * 60.00314 * 1 2 3 29 29 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47210 * 239.99999 * 2 1 3 31 31 H 1.09004 * 109.47238 * 119.99686 * 2 1 3 32 32 H 1.08006 * 119.99536 * 359.97438 * 6 4 3 33 33 H 0.96999 * 119.99596 * 93.70804 * 8 7 6 34 34 H 1.07994 * 120.25716 * 359.97438 * 10 9 8 35 35 H 1.08007 * 120.79569 * 179.97438 * 11 10 9 36 36 H 0.97000 * 119.99723 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47090 * 90.00286 * 22 21 12 38 38 H 1.09006 * 109.46530 * 210.00374 * 22 21 12 39 39 H 1.08996 * 109.47019 * 329.99569 * 22 21 12 40 40 H 1.09000 * 109.47086 * 303.96465 * 25 24 7 41 41 H 1.08994 * 109.47521 * 63.96805 * 25 24 7 42 42 H 1.08994 * 109.47412 * 304.88169 * 26 25 24 43 43 H 1.09007 * 109.47304 * 64.87553 * 26 25 24 44 44 H 1.09000 * 109.47375 * 184.87645 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3452 1.5243 -0.0005 5 8 4.0873 0.5583 -0.0005 6 6 3.8817 2.8213 0.0000 7 6 5.2326 2.9999 0.0000 8 7 5.7567 4.2671 -0.0001 9 6 5.9499 4.9373 -1.1983 10 6 5.5081 4.3558 -2.3886 11 6 5.6982 5.0147 -3.5700 12 6 6.3406 6.2730 -3.5420 13 6 6.5550 6.9965 -4.7352 14 1 6.5762 8.0761 -4.7157 15 6 6.7400 6.3151 -5.9428 16 7 6.6643 6.9624 -7.0778 17 14 7.0953 4.4811 -5.9355 18 1 5.8195 3.7294 -6.0474 19 1 7.9722 4.1421 -7.0849 20 1 7.7765 4.1140 -4.6680 21 6 6.7579 6.7952 -2.3030 22 6 7.4457 8.1350 -2.2479 23 7 6.5518 6.1201 -1.1940 24 8 6.0547 1.9295 0.0000 25 6 7.4567 2.1883 -0.0983 26 6 8.2154 0.8624 -0.1825 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2238 3.6778 0.0004 33 1 5.9922 4.6945 0.8382 34 1 5.0205 3.3923 -2.3753 35 1 5.3652 4.5844 -4.5029 36 1 6.7930 6.4899 -7.9151 37 1 6.7009 8.9209 -2.1229 38 1 8.1382 8.1535 -1.4062 39 1 7.9956 8.2994 -3.1745 40 1 7.6554 2.7781 -0.9932 41 1 7.7868 2.7406 0.7815 42 1 7.9494 0.2368 0.6695 43 1 7.9495 0.3496 -1.1068 44 1 9.2880 1.0561 -0.1701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162425860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:34 Heat of formation + Delta-G solvation = -89.508110 kcal Electronic energy + Delta-G solvation = -27121.652473 eV Core-core repulsion = 23232.280906 eV Total energy + Delta-G solvation = -3889.371567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98390 -41.13110 -40.25649 -37.59787 -37.12438 -35.55715 -33.66146 -33.55696 -32.63873 -32.22928 -31.05234 -28.98348 -26.61221 -25.36555 -24.01959 -23.80421 -23.47217 -22.16596 -21.17837 -19.62658 -19.62383 -18.89140 -18.25140 -17.55762 -17.54589 -17.15801 -16.87644 -16.55603 -15.82928 -15.44413 -15.26757 -15.02322 -14.79713 -14.67199 -14.50371 -14.19999 -13.91682 -13.69886 -13.56113 -13.52675 -13.42863 -13.26280 -12.93760 -12.87501 -12.61270 -12.58003 -12.43746 -12.22581 -12.01294 -11.77397 -11.55821 -11.41548 -11.40473 -11.03269 -10.35970 -10.19442 -9.75468 -9.01490 -8.89459 -6.39491 -0.15308 0.49058 0.69051 1.21919 1.32397 1.40860 1.61970 2.01751 2.04543 2.06373 2.31792 2.59085 3.40621 3.85218 3.91596 3.97982 4.03826 4.06382 4.12691 4.24875 4.27453 4.33398 4.35241 4.39885 4.56105 4.62589 4.82877 4.84949 4.93042 4.94070 4.94299 4.95959 5.00030 5.02090 5.12686 5.17217 5.22550 5.37511 5.54092 5.55527 5.68585 5.87792 6.19371 6.34354 6.42696 6.64428 6.75744 6.92360 7.48233 8.16624 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003815 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.545305 B = 7336.824972 C = 7873.209514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.507 3.493 5 O -0.540 6.540 6 C -0.301 4.301 7 C 0.442 3.558 8 N -0.694 5.694 9 C 0.276 3.724 10 C -0.176 4.176 11 C -0.179 4.179 12 C 0.006 3.994 13 C -0.452 4.452 14 H 0.078 0.922 15 C 0.053 3.947 16 N -0.842 5.842 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.259 1.259 21 C 0.056 3.944 22 C -0.071 4.071 23 N -0.494 5.494 24 O -0.302 6.302 25 C 0.047 3.953 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.426 0.574 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.294 0.706 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -10.693 12.912 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.358 3.642 5 O -0.434 6.434 6 C -0.324 4.324 7 C 0.299 3.701 8 N -0.346 5.346 9 C 0.048 3.952 10 C -0.199 4.199 11 C -0.205 4.205 12 C 0.001 3.999 13 C -0.483 4.483 14 H 0.097 0.903 15 C -0.163 4.163 16 N -0.468 5.468 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.183 1.183 21 C -0.086 4.086 22 C -0.128 4.128 23 N -0.209 5.209 24 O -0.207 6.207 25 C -0.028 4.028 26 C -0.200 4.200 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.183 0.817 33 H 0.268 0.732 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.893 -10.989 13.324 17.512 hybrid contribution -0.074 -0.645 -1.071 1.253 sum -2.966 -11.634 12.253 17.155 Atomic orbital electron populations 1.21816 0.90419 1.04295 1.03576 1.22811 0.97060 0.80198 1.01988 1.86225 1.23800 1.33058 1.84864 1.19317 0.80733 0.90358 0.73828 1.90923 1.60222 1.43765 1.48486 1.20420 0.91136 0.96712 1.24089 1.18782 0.88450 0.78553 0.84340 1.40899 1.73452 1.13016 1.07232 1.17448 1.01876 0.91374 0.84549 1.20827 1.05316 1.01223 0.92541 1.21114 1.03915 0.98206 0.97278 1.18506 0.93683 0.92879 0.94865 1.19280 1.43043 0.95744 0.90198 0.90346 1.26606 0.91640 1.03540 0.94471 1.69687 1.36920 1.40694 0.99526 0.85738 0.79192 0.78906 0.78586 1.19002 1.20250 1.18294 1.21295 1.01797 0.98556 0.86916 1.20344 0.99261 0.90800 1.02414 1.66379 1.15982 1.06562 1.31977 1.86474 1.19498 1.31575 1.83183 1.22977 0.77288 1.00480 1.02054 1.21769 1.00250 0.94803 1.03213 0.91129 0.91675 0.88154 0.92376 0.91670 0.81674 0.73198 0.86835 0.87249 0.89566 0.91493 0.90827 0.91337 0.93310 0.89951 0.90941 0.92587 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 1.21 6.10 71.98 0.44 1.64 16 3 O -0.36 -10.32 10.10 -59.76 -0.60 -10.92 16 4 C 0.51 16.37 7.65 68.34 0.52 16.89 16 5 O -0.54 -19.81 14.61 26.24 0.38 -19.42 16 6 C -0.30 -9.13 9.43 22.32 0.21 -8.92 16 7 C 0.44 13.54 5.20 83.40 0.43 13.98 16 8 N -0.69 -20.95 4.31 -302.77 -1.30 -22.25 16 9 C 0.28 10.53 7.06 133.21 0.94 11.47 16 10 C -0.18 -7.28 9.21 22.23 0.20 -7.08 16 11 C -0.18 -8.24 7.14 22.64 0.16 -8.08 16 12 C 0.01 0.29 5.15 -21.18 -0.11 0.18 16 13 C -0.45 -23.21 8.56 23.39 0.20 -23.01 16 14 H 0.08 4.21 7.24 -2.91 -0.02 4.19 16 15 C 0.05 2.67 5.46 85.23 0.47 3.13 16 16 N -0.84 -43.63 13.93 21.82 0.30 -43.33 16 17 Si 0.95 41.28 24.43 68.60 1.68 42.95 16 18 H -0.26 -11.12 6.60 99.48 0.66 -10.46 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.26 -11.55 6.77 99.48 0.67 -10.88 16 21 C 0.06 2.44 6.86 43.24 0.30 2.74 16 22 C -0.07 -2.60 9.58 71.24 0.68 -1.92 16 23 N -0.49 -20.05 10.29 -179.21 -1.84 -21.89 16 24 O -0.30 -9.48 7.86 -60.20 -0.47 -9.96 16 25 C 0.05 1.23 6.03 71.98 0.43 1.67 16 26 C -0.14 -3.06 10.28 71.98 0.74 -2.32 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 32 H 0.17 4.58 8.06 -2.91 -0.02 4.55 16 33 H 0.43 10.87 8.93 -92.71 -0.83 10.04 16 34 H 0.11 4.48 6.69 -2.91 -0.02 4.46 16 35 H 0.11 5.05 4.43 -2.91 -0.01 5.04 16 36 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.07 2.62 6.86 -2.39 -0.02 2.60 16 40 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.54 367.61 4.62 -55.92 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.11 Total: 29.98 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.36 Total: -1.09 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.84 Total: -87.47 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.69 Total: -40.30 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.68 Total: 42.95 kcal Total: -60.54 4.62 -55.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162425860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.585 kcal (2) G-P(sol) polarization free energy of solvation -60.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds