Wall clock time and date at job start Tue Mar 31 2020 13:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47442 * 2 1 4 4 C 1.34228 * 117.00182 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99680 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99950 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47262 * 60.00398 * 6 4 3 8 8 C 1.52997 * 109.47092 * 299.99776 * 6 4 3 9 9 C 1.50700 * 109.46876 * 179.97438 * 6 4 3 10 10 O 1.21281 * 120.00434 * 5.59778 * 9 6 4 11 11 N 1.34776 * 119.99869 * 185.60374 * 9 6 4 12 12 C 1.46499 * 120.00105 * 4.77925 * 11 9 6 13 13 C 1.50702 * 109.46983 * 96.81836 * 12 11 9 14 14 H 1.07999 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99733 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99593 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00209 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47283 * 89.99502 * 17 15 13 19 19 H 1.48502 * 109.46946 * 209.99882 * 17 15 13 20 20 H 1.48496 * 109.47211 * 329.99503 * 17 15 13 21 21 C 1.46504 * 120.00220 * 184.78725 * 11 9 6 22 22 C 1.50697 * 109.47372 * 89.99224 * 21 11 9 23 23 C 1.38673 * 120.41796 * 269.72371 * 22 21 11 24 24 C 1.38633 * 118.41443 * 179.78544 * 23 22 21 25 25 C 1.38227 * 119.16342 * 0.51173 * 24 23 22 26 26 N 1.31846 * 120.76310 * 359.72593 * 25 24 23 27 27 C 1.31887 * 121.72800 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.46833 * 300.00140 * 1 2 3 29 29 H 1.08999 * 109.47060 * 59.99572 * 1 2 3 30 30 H 1.08993 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47292 * 239.99860 * 2 1 3 32 32 H 1.08999 * 109.47137 * 119.99876 * 2 1 3 33 33 H 1.09003 * 109.47084 * 189.67695 * 8 6 4 34 34 H 1.08998 * 109.47010 * 309.68073 * 8 6 4 35 35 H 1.09000 * 109.46878 * 69.68015 * 8 6 4 36 36 H 1.09003 * 109.47298 * 216.81682 * 12 11 9 37 37 H 1.09001 * 109.47029 * 336.81822 * 12 11 9 38 38 H 0.96997 * 119.99181 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47252 * 209.99730 * 21 11 9 40 40 H 1.09008 * 109.46502 * 329.99331 * 21 11 9 41 41 H 1.07998 * 120.79458 * 0.02562 * 23 22 21 42 42 H 1.08000 * 120.41367 * 180.21851 * 24 23 22 43 43 H 1.08005 * 119.61640 * 179.75023 * 25 24 23 44 44 H 1.08005 * 119.61838 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9374 0.0012 7 1 3.5846 3.4692 0.8912 8 6 3.4498 3.6846 -1.2480 9 6 5.4257 2.8584 0.0023 10 8 5.9767 1.7828 -0.0998 11 7 6.1594 3.9831 0.1170 12 6 5.4971 5.2697 0.3455 13 6 5.5104 5.5868 1.8187 14 1 5.9669 4.8990 2.5150 15 6 4.9406 6.7556 2.2774 16 7 4.9526 7.0326 3.5631 17 14 4.1515 7.9455 1.0730 18 1 2.7162 7.6028 0.9069 19 1 4.2727 9.3307 1.5944 20 1 4.8385 7.8491 -0.2400 21 6 7.6194 3.9192 0.0130 22 6 8.0289 4.0996 -1.4260 23 6 8.1616 3.0006 -2.2613 24 6 8.5360 3.2148 -3.5788 25 6 8.7734 4.5065 -4.0101 26 7 8.6421 5.5274 -3.1863 27 6 8.2829 5.3616 -1.9281 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9972 4.6229 -1.3382 34 1 3.6336 3.0706 -2.1296 35 1 2.3830 3.8928 -1.1662 36 1 6.0253 6.0522 -0.1994 37 1 4.4665 5.2151 -0.0051 38 1 4.5514 7.8546 3.8858 39 1 8.0618 4.7102 0.6186 40 1 7.9670 2.9500 0.3709 41 1 7.9739 2.0021 -1.8953 42 1 8.6455 2.3826 -4.2583 43 1 9.0695 4.6814 -5.0340 44 1 8.1861 6.2223 -1.2828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184189854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:28 Heat of formation + Delta-G solvation = -95.516721 kcal Electronic energy + Delta-G solvation = -27715.535518 eV Core-core repulsion = 23825.903398 eV Total energy + Delta-G solvation = -3889.632120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06270 -41.21389 -40.31150 -37.70860 -36.86378 -35.13761 -34.59756 -33.41021 -32.61280 -32.23328 -29.95878 -27.65619 -26.48143 -24.79849 -24.46934 -23.97394 -23.28312 -22.20104 -20.07315 -19.08240 -18.96646 -17.98150 -17.87002 -17.68242 -17.50834 -16.99996 -16.56294 -16.49886 -16.08299 -15.78756 -15.20525 -14.82987 -14.69041 -14.57541 -14.36788 -14.24098 -13.98489 -13.93226 -13.58642 -13.57189 -13.18669 -13.00669 -12.96551 -12.80155 -12.64884 -12.59115 -12.48059 -12.25414 -11.95634 -11.62518 -11.51947 -11.45004 -10.85943 -10.76795 -10.54689 -10.46538 -9.96466 -9.49991 -8.27161 -6.35318 0.10737 0.31735 1.12592 1.39145 1.43693 1.47020 1.54970 1.63266 2.30453 2.37605 2.92988 3.06956 3.29565 3.53539 3.68338 3.82452 3.87617 3.91880 4.00333 4.07837 4.09156 4.09604 4.14608 4.34046 4.45788 4.52782 4.63888 4.68132 4.74243 4.76275 4.83010 4.84073 4.89753 4.93420 5.08873 5.13862 5.19494 5.36439 5.41403 5.47007 5.61116 5.76774 6.15861 6.53442 6.70392 6.71744 7.00541 7.18010 7.32307 8.89019 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008079 B = 0.005790 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.792838 B = 4834.962806 C = 7293.619364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.472 3.528 5 O -0.503 6.503 6 C -0.106 4.106 7 H 0.138 0.862 8 C -0.139 4.139 9 C 0.518 3.482 10 O -0.552 6.552 11 N -0.584 5.584 12 C 0.204 3.796 13 C -0.543 4.543 14 H 0.031 0.969 15 C 0.023 3.977 16 N -0.942 5.942 17 Si 0.931 3.069 18 H -0.254 1.254 19 H -0.289 1.289 20 H -0.235 1.235 21 C 0.163 3.837 22 C -0.154 4.154 23 C -0.066 4.066 24 C -0.168 4.168 25 C 0.094 3.906 26 N -0.506 5.506 27 C 0.104 3.896 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.163 0.837 43 H 0.187 0.813 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -7.155 -14.982 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.390 6.390 6 C -0.128 4.128 7 H 0.156 0.844 8 C -0.196 4.196 9 C 0.305 3.695 10 O -0.430 6.430 11 N -0.314 5.314 12 C 0.083 3.917 13 C -0.582 4.582 14 H 0.049 0.951 15 C -0.176 4.176 16 N -0.581 5.581 17 Si 0.753 3.247 18 H -0.179 1.179 19 H -0.215 1.215 20 H -0.158 1.158 21 C 0.039 3.961 22 C -0.157 4.157 23 C -0.093 4.093 24 C -0.188 4.188 25 C -0.064 4.064 26 N -0.215 5.215 27 C -0.053 4.053 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.145 0.855 42 H 0.180 0.820 43 H 0.204 0.796 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.732 -7.069 -15.201 17.174 hybrid contribution -0.200 -0.417 1.037 1.135 sum -3.932 -7.486 -14.164 16.496 Atomic orbital electron populations 1.21817 0.89831 1.04474 1.03878 1.23328 0.97387 0.79116 1.02379 1.86489 1.22955 1.33868 1.83950 1.23100 0.81163 0.91668 0.72722 1.90751 1.60663 1.43205 1.44373 1.21001 0.93037 0.92530 1.06274 0.84429 1.21931 1.04523 1.00314 0.92847 1.20093 0.89110 0.83766 0.76507 1.90721 1.73293 1.28310 1.50725 1.47817 1.06124 1.08099 1.69335 1.20024 0.95101 0.81424 0.95145 1.21496 1.38523 1.05752 0.92387 0.95114 1.25753 0.95871 0.99352 0.96664 1.70057 1.46015 1.26319 1.15732 0.85954 0.80467 0.77872 0.80393 1.17857 1.21512 1.15764 1.20136 0.80349 1.03498 0.92079 1.21190 1.01806 0.95055 0.97621 1.21725 0.94433 0.98998 0.94153 1.22437 1.00551 0.99773 0.96025 1.23326 0.94669 0.88026 1.00329 1.67746 1.13266 1.36232 1.04267 1.22790 0.94204 0.96174 0.92121 0.91436 0.90795 0.87958 0.91200 0.91963 0.89534 0.91441 0.87700 0.93572 0.91676 0.92285 0.88914 0.90467 0.85485 0.81959 0.79628 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.29 71.98 0.74 -1.40 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.36 -10.28 10.15 -51.39 -0.52 -10.80 16 4 C 0.47 16.61 7.23 71.24 0.51 17.12 16 5 O -0.50 -21.15 13.95 29.70 0.41 -20.74 16 6 C -0.11 -3.65 2.33 -12.29 -0.03 -3.68 16 7 H 0.14 4.85 7.72 -2.39 -0.02 4.83 16 8 C -0.14 -3.68 8.61 71.98 0.62 -3.06 16 9 C 0.52 20.74 6.97 87.66 0.61 21.35 16 10 O -0.55 -24.96 13.66 20.37 0.28 -24.68 16 11 N -0.58 -22.58 2.44 -830.48 -2.03 -24.61 16 12 C 0.20 8.17 3.52 85.63 0.30 8.47 16 13 C -0.54 -27.61 9.92 25.60 0.25 -27.35 16 14 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 15 C 0.02 1.19 5.47 84.65 0.46 1.65 16 16 N -0.94 -54.48 13.96 21.45 0.30 -54.18 16 17 Si 0.93 37.67 27.47 68.60 1.88 39.55 16 18 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 19 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 21 C 0.16 5.77 5.61 85.63 0.48 6.25 16 22 C -0.15 -4.77 5.48 -19.77 -0.11 -4.88 16 23 C -0.07 -1.89 9.86 22.47 0.22 -1.67 16 24 C -0.17 -3.75 10.11 22.36 0.23 -3.53 16 25 C 0.09 2.11 11.18 84.69 0.95 3.05 16 26 N -0.51 -14.43 10.36 -195.84 -2.03 -16.46 16 27 C 0.10 3.12 10.86 84.67 0.92 4.04 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.06 1.49 8.13 -2.39 -0.02 1.48 16 33 H 0.09 2.32 5.42 -2.39 -0.01 2.30 16 34 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.77 7.18 -2.39 -0.02 1.76 16 37 H 0.07 2.37 3.54 -2.39 -0.01 2.36 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.09 3.29 8.02 -2.39 -0.02 3.27 16 40 H 0.08 2.86 7.31 -2.38 -0.02 2.85 16 41 H 0.13 3.88 7.95 -2.91 -0.02 3.86 16 42 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 43 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -71.30 371.00 5.85 -65.45 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.95 Total: 28.48 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.61 Total: 17.98 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.76 Total: -95.25 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: 0.17 Total: -56.22 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.88 Total: 39.55 kcal Total: -71.30 5.85 -65.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184189854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.067 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds