Wall clock time and date at job start Tue Mar 31 2020 13:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.54891 * 129.09162 * 300.22325 * 6 4 3 8 8 C 1.57172 * 77.91577 * 180.15553 * 7 6 4 9 9 C 1.50703 * 129.24941 * 179.19156 * 8 7 6 10 10 O 1.21278 * 119.99668 * 241.28741 * 9 8 7 11 11 N 1.34771 * 119.99771 * 61.28401 * 9 8 7 12 12 C 1.46505 * 119.99920 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47488 * 89.99983 * 12 11 9 14 14 H 1.08008 * 119.99828 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00267 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00023 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46996 * 90.00412 * 17 15 13 19 19 H 1.48497 * 109.47390 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47097 * 330.00531 * 17 15 13 21 21 C 1.46502 * 120.00510 * 0.02562 * 11 9 8 22 22 C 1.53000 * 109.47238 * 89.99569 * 21 11 9 23 23 C 1.47200 * 109.46994 * 180.02562 * 22 21 11 24 24 N 7.02724 * 77.00266 * 12.91741 * 2 1 3 25 25 C 1.54411 * 129.01772 * 180.27553 * 6 4 3 26 26 C 1.54885 * 83.77227 * 317.35347 * 8 7 6 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 29 29 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 30 30 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 31 31 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 32 32 H 1.09000 * 114.97479 * 291.95214 * 7 6 4 33 33 H 1.08997 * 114.97980 * 67.12663 * 7 6 4 34 34 H 1.08996 * 109.47156 * 210.00215 * 12 11 9 35 35 H 1.09000 * 109.47134 * 330.00013 * 12 11 9 36 36 H 0.97001 * 120.00305 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.47089 * 210.00393 * 21 11 9 38 38 H 1.09003 * 109.46383 * 329.99544 * 21 11 9 39 39 H 1.09000 * 109.47061 * 300.00255 * 22 21 11 40 40 H 1.09000 * 109.46743 * 60.00051 * 22 21 11 41 41 H 1.09004 * 114.92971 * 293.13656 * 25 6 4 42 42 H 1.08999 * 114.93451 * 68.10044 * 25 6 4 43 43 H 1.08999 * 116.12271 * 290.12163 * 26 8 7 44 44 H 1.09003 * 113.83197 * 154.96346 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 3.7359 4.0661 -1.0504 8 6 4.6843 4.7449 0.0031 9 6 5.2812 6.1287 -0.0034 10 8 6.4856 6.2694 -0.0230 11 7 4.4765 7.2097 0.0126 12 6 5.0567 8.5549 0.0057 13 6 5.2317 9.0194 -1.4171 14 1 4.9395 8.3769 -2.2347 15 6 5.7647 10.2643 -1.6754 16 7 6.1210 11.0464 -0.6799 17 14 5.9823 10.8397 -3.4392 18 1 4.7547 11.5472 -3.8840 19 1 7.1423 11.7633 -3.5191 20 1 6.2226 9.6660 -4.3166 21 6 3.0216 7.0397 0.0368 22 6 2.5395 6.9772 1.4876 23 6 1.0777 6.8058 1.5118 24 7 -0.0504 6.6739 1.5307 25 6 5.4008 3.3772 -0.0122 26 6 3.7430 4.0725 1.0331 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.1955 3.8753 -2.0202 33 1 2.7273 4.4745 -1.1133 34 1 4.3923 9.2399 0.5324 35 1 6.0264 8.5349 0.5032 36 1 6.4957 11.9225 -0.8616 37 1 2.5489 7.8826 -0.4673 38 1 2.7554 6.1147 -0.4747 39 1 3.0122 6.1343 1.9916 40 1 2.8058 7.9022 1.9990 41 1 5.9549 3.1386 0.8957 42 1 5.9432 3.1517 -0.9304 43 1 2.7348 4.4813 1.1003 44 1 4.2092 3.8878 2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186559007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:22 Heat of formation + Delta-G solvation = 9.240749 kcal Electronic energy + Delta-G solvation = -27133.521403 eV Core-core repulsion = 23248.431907 eV Total energy + Delta-G solvation = -3885.089495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51264 -40.29379 -38.58986 -36.90163 -36.80807 -35.30747 -32.90446 -32.06553 -30.93158 -28.09816 -26.64733 -26.12408 -25.90976 -24.32812 -23.88518 -22.94987 -21.53796 -19.60236 -18.26196 -17.78865 -17.49436 -16.86327 -16.81505 -16.49591 -15.99274 -15.11921 -14.94289 -14.63913 -14.51872 -14.38046 -14.20747 -14.07160 -13.73632 -13.33839 -13.17742 -12.83594 -12.46740 -12.42017 -12.32216 -12.21392 -11.99355 -11.87068 -11.64274 -11.53127 -11.45188 -11.27727 -11.01162 -10.85378 -10.83571 -10.78276 -10.63008 -10.47942 -10.42903 -10.20016 -9.74833 -9.15005 -8.50311 -7.92803 -6.12002 -4.16825 1.81221 2.24872 2.68167 2.78914 2.93222 3.26973 3.34557 3.37519 3.51437 3.86375 4.04318 4.07185 4.11184 4.30023 4.37882 4.47069 4.51273 4.58424 4.63791 4.90849 4.93657 5.02384 5.13011 5.23624 5.28772 5.30724 5.35944 5.42363 5.42747 5.51605 5.63669 5.67325 5.76036 5.77693 5.82152 5.92252 6.06976 6.13938 6.87774 7.28808 7.36657 7.51188 7.55117 7.83895 8.12324 8.17066 8.76099 8.91604 9.48989 10.96177 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.003391 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.278729 B = 8254.205435 C = 9106.248237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.350 6.350 4 C 0.529 3.471 5 O -0.499 6.499 6 C -0.153 4.153 7 C -0.082 4.082 8 C -0.146 4.146 9 C 0.570 3.430 10 O -0.519 6.519 11 N -0.587 5.587 12 C 0.245 3.755 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.057 4.057 23 C 0.215 3.785 24 N -0.441 5.441 25 C -0.061 4.061 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -17.297 3.637 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.371 3.629 5 O -0.386 6.386 6 C -0.154 4.154 7 C -0.120 4.120 8 C -0.149 4.149 9 C 0.355 3.645 10 O -0.395 6.395 11 N -0.318 5.318 12 C 0.126 3.874 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.014 4.014 22 C -0.098 4.098 23 C -0.103 4.103 24 N -0.119 5.119 25 C -0.098 4.098 26 C -0.123 4.123 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.512 -17.515 3.694 20.759 hybrid contribution 0.495 0.224 -0.968 1.110 sum -10.017 -17.291 2.726 20.168 Atomic orbital electron populations 1.21816 0.92407 1.03019 1.03794 1.23081 0.95523 0.79895 1.02719 1.86506 1.23942 1.32545 1.83728 1.21413 0.80404 0.89124 0.71954 1.90680 1.60728 1.42182 1.45002 1.23362 1.00273 0.89292 1.02514 1.24625 0.99749 0.91058 0.96523 1.24346 0.97726 0.94149 0.98714 1.18228 0.86243 0.82645 0.77415 1.90725 1.14090 1.85655 1.48997 1.48106 1.04410 1.08287 1.70962 1.19416 0.95164 0.74978 0.97824 1.21405 1.42365 1.00901 0.92218 0.92254 1.24906 0.95060 0.96526 0.97422 1.69912 1.42431 1.09948 1.30889 0.86512 0.77720 0.78630 0.84671 1.20639 1.21105 1.19843 1.21464 0.82748 1.04139 0.93039 1.20038 0.81856 1.06287 1.01643 1.29064 0.95048 0.92957 0.93215 1.81210 1.12826 1.09309 1.08530 1.23647 0.91747 0.90549 1.03886 1.24261 0.99809 0.91538 0.96703 0.90150 0.91339 0.91311 0.91076 0.91092 0.89212 0.88904 0.94442 0.93379 0.92617 0.88586 0.90273 0.87370 0.86357 0.89443 0.89361 0.88963 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.35 -3.77 10.22 -39.24 -0.40 -4.17 16 4 C 0.53 6.38 8.07 36.00 0.29 6.67 16 5 O -0.50 -7.18 16.84 -18.76 -0.32 -7.49 16 6 C -0.15 -1.70 3.47 -172.26 -0.60 -2.30 16 7 C -0.08 -0.90 7.23 -24.71 -0.18 -1.08 16 8 C -0.15 -1.90 2.53 -170.99 -0.43 -2.33 16 9 C 0.57 10.23 7.78 -10.99 -0.09 10.15 16 10 O -0.52 -11.83 16.68 5.56 0.09 -11.74 16 11 N -0.59 -10.33 2.46 -175.06 -0.43 -10.76 16 12 C 0.24 5.59 5.16 -5.19 -0.03 5.56 16 13 C -0.53 -13.76 9.39 -34.45 -0.32 -14.09 16 14 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 17 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 C 0.11 1.44 4.93 -4.04 -0.02 1.42 16 22 C -0.06 -0.58 5.25 -29.52 -0.15 -0.73 16 23 C 0.22 2.49 15.42 -20.76 -0.32 2.17 16 24 N -0.44 -6.22 18.54 42.15 0.78 -5.44 16 25 C -0.06 -0.75 7.77 -26.71 -0.21 -0.95 16 26 C -0.09 -0.86 5.94 -25.98 -0.15 -1.01 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 33 H 0.09 0.89 6.35 -51.93 -0.33 0.56 16 34 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 35 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 38 H 0.08 0.88 4.19 -51.93 -0.22 0.66 16 39 H 0.11 0.93 5.68 -51.93 -0.29 0.63 16 40 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.03 7.94 -51.93 -0.41 0.62 16 42 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 43 H 0.09 0.80 5.91 -51.93 -0.31 0.50 16 44 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -33.01 376.10 -6.68 -39.69 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.10 Total: -2.59 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.70 Total: 5.27 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 1.09 Total: -40.45 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.62 Total: -23.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.01 -6.68 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186559007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.933 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds