Wall clock time and date at job start Tue Mar 31 2020 13:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.54891 * 129.09162 * 300.22325 * 6 4 3 8 8 C 1.57172 * 77.91577 * 180.15553 * 7 6 4 9 9 C 1.50703 * 129.24941 * 179.19156 * 8 7 6 10 10 O 1.21278 * 119.99668 * 241.28741 * 9 8 7 11 11 N 1.34771 * 119.99771 * 61.28401 * 9 8 7 12 12 C 1.46505 * 119.99920 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47488 * 89.99983 * 12 11 9 14 14 H 1.08008 * 119.99828 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00267 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00023 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46996 * 90.00412 * 17 15 13 19 19 H 1.48497 * 109.47390 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47097 * 330.00531 * 17 15 13 21 21 C 1.46502 * 120.00510 * 0.02562 * 11 9 8 22 22 C 1.53000 * 109.47238 * 89.99569 * 21 11 9 23 23 C 1.47200 * 109.46994 * 180.02562 * 22 21 11 24 24 N 7.02724 * 77.00266 * 12.91741 * 2 1 3 25 25 C 1.54411 * 129.01772 * 180.27553 * 6 4 3 26 26 C 1.54885 * 83.77227 * 317.35347 * 8 7 6 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 29 29 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 30 30 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 31 31 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 32 32 H 1.09000 * 114.97479 * 291.95214 * 7 6 4 33 33 H 1.08997 * 114.97980 * 67.12663 * 7 6 4 34 34 H 1.08996 * 109.47156 * 210.00215 * 12 11 9 35 35 H 1.09000 * 109.47134 * 330.00013 * 12 11 9 36 36 H 0.97001 * 120.00305 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.47089 * 210.00393 * 21 11 9 38 38 H 1.09003 * 109.46383 * 329.99544 * 21 11 9 39 39 H 1.09000 * 109.47061 * 300.00255 * 22 21 11 40 40 H 1.09000 * 109.46743 * 60.00051 * 22 21 11 41 41 H 1.09004 * 114.92971 * 293.13656 * 25 6 4 42 42 H 1.08999 * 114.93451 * 68.10044 * 25 6 4 43 43 H 1.08999 * 116.12271 * 290.12163 * 26 8 7 44 44 H 1.09003 * 113.83197 * 154.96346 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 3.7359 4.0661 -1.0504 8 6 4.6843 4.7449 0.0031 9 6 5.2812 6.1287 -0.0034 10 8 6.4856 6.2694 -0.0230 11 7 4.4765 7.2097 0.0126 12 6 5.0567 8.5549 0.0057 13 6 5.2317 9.0194 -1.4171 14 1 4.9395 8.3769 -2.2347 15 6 5.7647 10.2643 -1.6754 16 7 6.1210 11.0464 -0.6799 17 14 5.9823 10.8397 -3.4392 18 1 4.7547 11.5472 -3.8840 19 1 7.1423 11.7633 -3.5191 20 1 6.2226 9.6660 -4.3166 21 6 3.0216 7.0397 0.0368 22 6 2.5395 6.9772 1.4876 23 6 1.0777 6.8058 1.5118 24 7 -0.0504 6.6739 1.5307 25 6 5.4008 3.3772 -0.0122 26 6 3.7430 4.0725 1.0331 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.1955 3.8753 -2.0202 33 1 2.7273 4.4745 -1.1133 34 1 4.3923 9.2399 0.5324 35 1 6.0264 8.5349 0.5032 36 1 6.4957 11.9225 -0.8616 37 1 2.5489 7.8826 -0.4673 38 1 2.7554 6.1147 -0.4747 39 1 3.0122 6.1343 1.9916 40 1 2.8058 7.9022 1.9990 41 1 5.9549 3.1386 0.8957 42 1 5.9432 3.1517 -0.9304 43 1 2.7348 4.4813 1.1003 44 1 4.2092 3.8878 2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186559007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:22 Heat of formation + Delta-G solvation = -9.344285 kcal Electronic energy + Delta-G solvation = -27134.327310 eV Core-core repulsion = 23248.431907 eV Total energy + Delta-G solvation = -3885.895403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.48219 -41.21871 -39.98304 -38.00481 -37.70257 -36.69591 -34.81400 -32.65484 -32.21581 -29.70495 -27.80538 -26.99086 -26.90514 -25.53353 -25.25867 -23.85466 -22.73102 -20.63932 -19.40076 -18.80577 -18.54315 -18.30706 -17.91643 -17.61684 -17.39391 -16.56461 -16.01854 -15.94437 -15.63126 -15.44489 -15.20852 -15.02874 -14.84703 -14.44092 -14.23907 -13.91788 -13.69610 -13.56005 -13.49069 -13.26930 -13.01725 -12.94011 -12.73546 -12.68044 -12.54757 -12.50697 -12.39625 -12.34025 -12.15705 -11.85346 -11.70888 -11.66415 -11.55173 -11.37332 -11.33674 -10.60097 -10.55586 -9.50779 -8.15852 -6.27529 0.89266 1.41622 1.42425 1.44821 1.52840 1.55901 1.78510 1.86240 2.22054 2.45971 2.93950 3.03767 3.09311 3.16837 3.21282 3.34969 3.44966 3.61448 3.88215 4.01693 4.04615 4.07120 4.12864 4.35364 4.43121 4.49560 4.56147 4.64838 4.81043 4.82513 4.83067 4.85160 4.87532 4.93248 4.95895 5.08182 5.12948 5.16231 5.36476 5.39249 5.61871 5.88118 6.14536 6.62112 6.62658 6.71385 6.82356 7.33343 7.48413 8.91041 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.003391 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.278729 B = 8254.205435 C = 9106.248237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.534 3.466 5 O -0.527 6.527 6 C -0.144 4.144 7 C -0.072 4.072 8 C -0.163 4.163 9 C 0.568 3.432 10 O -0.580 6.580 11 N -0.586 5.586 12 C 0.259 3.741 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.108 3.892 22 C -0.046 4.046 23 C 0.243 3.757 24 N -0.479 5.479 25 C -0.069 4.069 26 C -0.066 4.066 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 -18.541 3.469 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.267 6.267 4 C 0.378 3.622 5 O -0.416 6.416 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.166 4.166 9 C 0.356 3.644 10 O -0.459 6.459 11 N -0.315 5.315 12 C 0.138 3.862 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.016 4.016 22 C -0.087 4.087 23 C -0.074 4.074 24 N -0.157 5.157 25 C -0.106 4.106 26 C -0.103 4.103 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.772 -18.775 3.527 22.980 hybrid contribution 1.184 0.564 -0.915 1.599 sum -11.588 -18.211 2.612 21.743 Atomic orbital electron populations 1.21836 0.90519 1.04415 1.03706 1.23371 0.96965 0.78743 1.02958 1.86501 1.22923 1.34094 1.83200 1.21423 0.80725 0.88879 0.71197 1.90675 1.61444 1.43057 1.46464 1.23106 0.99024 0.89264 1.03164 1.24679 1.00121 0.90146 0.96023 1.23986 0.99227 0.91375 1.02013 1.18879 0.85531 0.84272 0.75723 1.90690 1.16816 1.86802 1.51629 1.47951 1.06478 1.06463 1.70610 1.18895 0.93676 0.77761 0.95875 1.21747 1.41763 1.00832 0.93527 0.92671 1.25688 0.94997 0.96917 1.01056 1.70014 1.43460 1.10318 1.32715 0.85580 0.77963 0.78016 0.80250 1.19228 1.21187 1.19873 1.21675 0.79579 1.05152 0.95185 1.19957 0.81036 1.07770 0.99894 1.29000 0.94748 0.91666 0.92017 1.81259 1.13952 1.10800 1.09713 1.23736 0.92884 0.90249 1.03768 1.24283 1.00045 0.89579 0.96394 0.88051 0.91362 0.91383 0.90990 0.90829 0.89290 0.86675 0.94174 0.97476 0.92580 0.89189 0.87869 0.85032 0.85729 0.89225 0.90177 0.86743 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.64 10.22 -51.34 -0.52 -7.16 16 4 C 0.53 11.76 8.07 71.23 0.57 12.33 16 5 O -0.53 -14.49 16.84 21.94 0.37 -14.12 16 6 C -0.14 -2.86 3.47 -63.68 -0.22 -3.08 16 7 C -0.07 -1.41 7.23 31.90 0.23 -1.18 16 8 C -0.16 -3.99 2.53 -62.86 -0.16 -4.15 16 9 C 0.57 20.42 7.78 87.66 0.68 21.10 16 10 O -0.58 -27.46 16.68 -3.02 -0.05 -27.51 16 11 N -0.59 -20.39 2.46 -826.16 -2.03 -22.42 16 12 C 0.26 12.08 5.16 85.63 0.44 12.53 16 13 C -0.54 -28.40 9.39 25.60 0.24 -28.16 16 14 H 0.06 2.88 7.81 -2.91 -0.02 2.85 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.93 -52.66 13.29 21.44 0.28 -52.37 16 17 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 C 0.11 2.56 4.93 86.38 0.43 2.98 16 22 C -0.05 -0.79 5.25 28.79 0.15 -0.64 16 23 C 0.24 4.90 15.42 89.44 1.38 6.28 16 24 N -0.48 -12.33 18.54 20.00 0.37 -11.96 16 25 C -0.07 -1.62 7.77 30.61 0.24 -1.38 16 26 C -0.07 -1.11 5.94 31.08 0.18 -0.92 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 31 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.09 1.77 7.91 -2.39 -0.02 1.75 16 33 H 0.12 1.73 6.35 -2.39 -0.02 1.71 16 34 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 35 H 0.01 0.39 7.42 -2.39 -0.02 0.37 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.10 1.94 4.19 -2.39 -0.01 1.93 16 39 H 0.13 1.75 5.68 -2.39 -0.01 1.74 16 40 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.05 7.94 -2.38 -0.02 2.03 16 42 H 0.08 1.99 7.91 -2.39 -0.02 1.97 16 43 H 0.11 1.44 5.91 -2.39 -0.01 1.43 16 44 H 0.10 1.51 7.93 -2.39 -0.02 1.49 16 Total: -1.00 -73.83 376.10 7.29 -66.54 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.03 Total: 6.68 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.82 Total: 17.41 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -1.37 Total: -86.75 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.21 Total: -48.79 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.83 7.29 -66.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186559007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.200 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds