Wall clock time and date at job start Tue Mar 31 2020 13:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45204 * 109.46779 * 2 1 4 4 C 1.34223 * 116.99901 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00152 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46701 * 60.00191 * 6 4 3 8 8 C 1.52999 * 109.47190 * 299.99926 * 6 4 3 9 9 C 1.50691 * 109.47224 * 174.99760 * 8 6 4 10 10 C 1.38243 * 120.00292 * 269.73143 * 9 8 6 11 11 C 1.38228 * 119.99875 * 179.76669 * 10 9 8 12 12 C 1.38233 * 120.00138 * 0.50438 * 11 10 9 13 13 C 1.38236 * 120.00132 * 359.74632 * 12 11 10 14 14 C 1.38231 * 120.00027 * 0.02562 * 13 12 11 15 15 N 1.46501 * 109.47221 * 179.97438 * 6 4 3 16 16 C 1.34777 * 119.99950 * 275.00151 * 15 6 4 17 17 O 1.21584 * 120.00145 * 0.02562 * 16 15 6 18 18 N 1.34773 * 119.99660 * 180.02562 * 16 15 6 19 19 C 1.46493 * 120.00412 * 359.97438 * 18 16 15 20 20 C 1.37200 * 119.99671 * 179.72669 * 18 16 15 21 21 H 1.07997 * 119.99878 * 335.85972 * 20 18 16 22 22 C 1.38878 * 119.99825 * 155.86573 * 20 18 16 23 23 N 1.31476 * 119.99459 * 160.27790 * 22 20 18 24 24 Si 1.86801 * 120.00090 * 340.27289 * 22 20 18 25 25 H 1.48502 * 109.46567 * 85.73190 * 24 22 20 26 26 H 1.48494 * 109.47161 * 205.72848 * 24 22 20 27 27 H 1.48497 * 109.47077 * 325.73467 * 24 22 20 28 28 H 1.09000 * 109.47132 * 60.00247 * 1 2 3 29 29 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47347 * 299.99715 * 1 2 3 31 31 H 1.09001 * 109.46821 * 240.00275 * 2 1 3 32 32 H 1.09000 * 109.47132 * 119.99753 * 2 1 3 33 33 H 1.09002 * 109.47123 * 295.00492 * 8 6 4 34 34 H 1.09007 * 109.46576 * 54.99532 * 8 6 4 35 35 H 1.08001 * 119.99634 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.99627 * 180.22705 * 11 10 9 37 37 H 1.08007 * 119.99641 * 179.72410 * 12 11 10 38 38 H 1.08000 * 119.99563 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.00144 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99537 * 94.99864 * 15 6 4 41 41 H 1.09000 * 109.47531 * 273.49845 * 19 18 16 42 42 H 1.09003 * 109.47180 * 33.49369 * 19 18 16 43 43 H 1.08997 * 109.47735 * 153.50069 * 19 18 16 44 44 H 0.97007 * 119.99289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 1 3.5850 3.4699 0.8889 8 6 3.4486 3.6842 -1.2504 9 6 3.9227 5.1133 -1.1907 10 6 3.1298 6.0806 -0.6018 11 6 3.5668 7.3906 -0.5427 12 6 4.7921 7.7355 -1.0817 13 6 5.5827 6.7693 -1.6752 14 6 5.1478 5.4583 -1.7302 15 7 5.3836 2.8610 -0.0010 16 6 6.0512 2.7246 1.1618 17 8 5.4393 2.6648 2.2107 18 7 7.3971 2.6547 1.1619 19 6 8.1345 2.7262 -0.1019 20 6 8.0770 2.5215 2.3461 21 1 7.6243 2.8532 3.2689 22 6 9.3473 1.9604 2.3582 23 7 10.1502 2.1731 3.3774 24 14 9.9151 0.9033 0.9265 25 1 10.4810 1.7724 -0.1364 26 1 10.9556 -0.0470 1.3950 27 1 8.7602 0.1445 0.3829 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8583 3.2022 -2.1382 34 1 2.3597 3.6641 -1.2959 35 1 2.1704 5.8120 -0.1849 36 1 2.9489 8.1456 -0.0793 37 1 5.1315 8.7599 -1.0395 38 1 6.5398 7.0389 -2.0967 39 1 5.7653 4.7035 -2.1942 40 1 5.8718 2.9083 -0.8379 41 1 8.2103 1.7290 -0.5354 42 1 7.6075 3.3837 -0.7933 43 1 9.1343 3.1191 0.0824 44 1 11.0376 1.7815 3.3856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192739386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:02 Heat of formation + Delta-G solvation = -67.871301 kcal Electronic energy + Delta-G solvation = -27695.961199 eV Core-core repulsion = 23807.527874 eV Total energy + Delta-G solvation = -3888.433325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60946 -39.37231 -38.87291 -36.57039 -35.44068 -34.60662 -32.38978 -31.76670 -31.59534 -30.89885 -28.95147 -26.53938 -25.28341 -24.54843 -22.93819 -22.60826 -21.31143 -20.73196 -19.68737 -17.72317 -17.33369 -16.99626 -16.84748 -16.35540 -16.34083 -15.76721 -15.22378 -15.12583 -14.58339 -14.36739 -14.13050 -13.60555 -13.52987 -13.42193 -13.01974 -12.90796 -12.82112 -12.63034 -12.51101 -12.28761 -12.18107 -11.96928 -11.79297 -11.63222 -11.43353 -11.17653 -11.01371 -10.48979 -10.48453 -10.31633 -10.29628 -9.74167 -9.18330 -8.94777 -8.92012 -8.76220 -8.58697 -7.77343 -6.23931 -3.76040 1.30692 1.40780 2.44249 2.64142 3.10914 3.31606 3.33717 3.59165 3.76431 4.18621 4.26131 4.56029 4.75454 4.78168 4.84995 4.86747 4.92202 4.99638 5.07012 5.09702 5.16457 5.20188 5.26759 5.46001 5.49259 5.59768 5.61737 5.67002 5.72755 5.77429 5.83061 5.99241 6.01920 6.03875 6.26448 6.43959 6.50594 6.53913 6.56388 6.92912 6.98760 7.18842 7.88987 7.98635 8.40737 8.80352 9.07118 9.47253 9.93162 10.89020 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.005403 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.321332 B = 5181.250684 C = 7539.796049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.445 3.555 5 O -0.488 6.488 6 C 0.189 3.811 7 H 0.126 0.874 8 C -0.082 4.082 9 C -0.079 4.079 10 C -0.112 4.112 11 C -0.119 4.119 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.107 4.107 15 N -0.735 5.735 16 C 0.679 3.321 17 O -0.601 6.601 18 N -0.485 5.485 19 C 0.056 3.944 20 C -0.295 4.295 21 H 0.113 0.887 22 C 0.049 3.951 23 N -0.877 5.877 24 Si 0.885 3.115 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.270 1.270 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.392 0.608 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 5.667 -15.012 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.284 3.716 5 O -0.372 6.372 6 C 0.079 3.921 7 H 0.143 0.857 8 C -0.120 4.120 9 C -0.079 4.079 10 C -0.130 4.130 11 C -0.137 4.137 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.125 4.125 15 N -0.394 5.394 16 C 0.382 3.618 17 O -0.481 6.481 18 N -0.210 5.210 19 C -0.088 4.088 20 C -0.423 4.423 21 H 0.130 0.870 22 C -0.154 4.154 23 N -0.516 5.516 24 Si 0.713 3.287 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.195 1.195 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.228 0.772 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.102 5.253 -14.109 22.044 hybrid contribution 0.888 -0.955 -1.058 1.679 sum -15.215 4.298 -15.167 21.909 Atomic orbital electron populations 1.21789 0.92798 1.02741 1.03394 1.22972 0.95104 0.80780 1.02553 1.86484 1.24909 1.32004 1.84518 1.24695 0.80408 0.93793 0.72696 1.90689 1.60289 1.42687 1.43554 1.20046 0.82021 0.88405 1.01590 0.85669 1.20837 1.02668 0.91969 0.96507 1.19604 0.95025 0.94339 0.98893 1.21042 0.99901 0.92901 0.99133 1.21110 0.96545 0.96337 0.99702 1.21144 0.94830 0.99428 0.98599 1.21126 0.99575 0.93180 0.99512 1.21007 0.95403 0.96361 0.99737 1.44959 1.03771 1.81641 1.09016 1.15779 0.82178 0.80822 0.83019 1.90776 1.66987 1.59840 1.30480 1.42839 1.02045 1.69774 1.06378 1.22036 0.99068 1.00066 0.87651 1.19071 0.97963 1.39325 0.85921 0.86982 1.25163 0.95820 0.97258 0.97182 1.69745 1.07603 1.42798 1.31458 0.87096 0.78275 0.81259 0.82028 1.20468 1.22052 1.19538 0.91613 0.90500 0.91432 0.91531 0.91276 0.89982 0.88096 0.85853 0.86165 0.86297 0.86078 0.86366 0.77248 0.93915 0.92848 0.89849 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.05 10.03 -39.24 -0.39 -5.45 16 4 C 0.44 7.53 7.29 36.01 0.26 7.79 16 5 O -0.49 -10.16 16.07 -18.75 -0.30 -10.46 16 6 C 0.19 2.94 2.47 -69.08 -0.17 2.77 16 7 H 0.13 2.11 7.58 -51.93 -0.39 1.71 16 8 C -0.08 -0.88 4.86 -27.89 -0.14 -1.02 16 9 C -0.08 -0.90 4.95 -104.62 -0.52 -1.42 16 10 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 11 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 12 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 13 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 14 C -0.11 -1.23 9.10 -39.58 -0.36 -1.59 16 15 N -0.73 -13.53 3.93 -59.81 -0.23 -13.76 16 16 C 0.68 16.68 8.06 -86.92 -0.70 15.98 16 17 O -0.60 -17.09 15.72 5.29 0.08 -17.01 16 18 N -0.49 -12.37 2.82 -127.61 -0.36 -12.73 16 19 C 0.06 1.15 7.72 59.84 0.46 1.61 16 20 C -0.30 -8.77 9.67 -14.91 -0.14 -8.91 16 21 H 0.11 3.73 7.64 -52.49 -0.40 3.33 16 22 C 0.05 1.41 5.24 -17.47 -0.09 1.32 16 23 N -0.88 -26.38 13.96 55.49 0.77 -25.61 16 24 Si 0.88 21.57 23.96 -169.99 -4.07 17.50 16 25 H -0.28 -6.13 6.44 56.52 0.36 -5.77 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.27 -6.72 6.62 56.52 0.37 -6.34 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.10 0.89 7.94 -51.93 -0.41 0.48 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.19 7.57 -52.49 -0.40 0.80 16 40 H 0.39 6.17 5.64 -40.82 -0.23 5.94 16 41 H 0.04 0.87 5.48 -51.93 -0.28 0.59 16 42 H 0.05 0.85 6.55 -51.93 -0.34 0.51 16 43 H 0.08 1.76 5.72 -51.93 -0.30 1.46 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -37.34 365.78 -7.53 -44.87 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.18 Total: 7.18 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -2.36 Total: 9.96 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.18 Total: -52.10 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.61 Total: -32.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.07 Total: 17.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.34 -7.53 -44.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192739386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.998 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds