Wall clock time and date at job start Tue Mar 31 2020 12:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47455 * 2 1 4 4 O 1.42905 * 109.46911 * 240.00447 * 2 1 3 5 5 C 1.35907 * 116.99998 * 84.94428 * 4 2 1 6 6 C 1.38728 * 120.05676 * 174.71230 * 5 4 2 7 7 C 1.38147 * 119.94201 * 179.74444 * 6 5 4 8 8 C 1.38263 * 120.05639 * 0.50649 * 7 6 5 9 9 C 1.38264 * 120.11281 * 359.77201 * 8 7 6 10 10 C 1.38149 * 120.05248 * 359.97070 * 9 8 7 11 11 C 1.50698 * 109.47138 * 120.00803 * 2 1 3 12 12 O 1.21286 * 120.00117 * 119.99657 * 11 2 1 13 13 N 1.34771 * 119.99730 * 299.99598 * 11 2 1 14 14 C 1.46502 * 119.99786 * 179.97438 * 13 11 2 15 15 H 1.08994 * 110.88694 * 31.12306 * 14 13 11 16 16 C 1.55133 * 111.19429 * 267.18720 * 14 13 11 17 17 N 1.47426 * 104.72475 * 279.19383 * 16 14 13 18 18 C 1.36927 * 125.65020 * 155.81528 * 17 16 14 19 19 H 1.08002 * 120.00320 * 352.83244 * 18 17 16 20 20 C 1.38814 * 120.00262 * 172.83373 * 18 17 16 21 21 N 1.31613 * 120.00223 * 167.40555 * 20 18 17 22 22 Si 1.86804 * 119.99588 * 347.40827 * 20 18 17 23 23 H 1.48507 * 109.46754 * 185.91257 * 22 20 18 24 24 H 1.48495 * 109.47281 * 65.91501 * 22 20 18 25 25 H 1.48498 * 109.47063 * 305.91376 * 22 20 18 26 26 C 1.47021 * 108.70065 * 335.55103 * 17 16 14 27 27 C 1.54326 * 107.27079 * 1.28867 * 26 17 16 28 28 H 1.09000 * 110.72149 * 263.64988 * 27 26 17 29 29 O 1.42903 * 110.71962 * 140.55608 * 27 26 17 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47095 * 299.99715 * 1 2 3 32 32 H 1.09002 * 109.47024 * 59.99316 * 1 2 3 33 33 H 1.07999 * 120.02627 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.96729 * 180.27355 * 7 6 5 35 35 H 1.07997 * 119.94231 * 179.74167 * 8 7 6 36 36 H 1.07995 * 119.97169 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02595 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00236 * 0.02562 * 13 11 2 39 39 H 1.08997 * 110.49784 * 160.34856 * 16 14 13 40 40 H 1.09005 * 110.34137 * 37.95335 * 16 14 13 41 41 H 0.97002 * 120.00584 * 5.08002 * 21 20 18 42 42 H 1.09004 * 109.88378 * 120.70107 * 26 17 16 43 43 H 1.08994 * 109.88625 * 241.86889 * 26 17 16 44 44 H 0.96696 * 114.00027 * 61.45388 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1114 0.0625 -2.3045 6 6 2.6692 -0.4968 -3.4450 7 6 2.7699 0.2518 -4.6016 8 6 2.3250 1.5608 -4.6202 9 6 1.7740 2.1224 -3.4833 10 6 1.6661 1.3762 -2.3256 11 6 2.0324 -0.7106 1.2303 12 8 2.7296 -1.6967 1.1189 13 7 1.7068 -0.2502 2.4544 14 6 2.1947 -0.9413 3.6505 15 1 3.1647 -1.4022 3.4645 16 6 1.1681 -1.9921 4.1491 17 7 0.1743 -1.2133 4.9102 18 6 -1.1232 -1.5845 5.1418 19 1 -1.5287 -2.4608 4.6581 20 6 -1.9174 -0.8346 5.9984 21 7 -3.2178 -1.0342 6.0341 22 14 -1.1403 0.4581 7.1006 23 1 -2.1708 1.0141 8.0140 24 1 -0.5795 1.5495 6.2642 25 1 -0.0529 -0.1617 7.8998 26 6 0.8090 0.0251 5.3848 27 6 2.2613 0.0248 4.8628 28 1 2.9444 -0.3530 5.6234 29 8 2.6484 1.3352 4.4442 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.0209 -1.5178 -3.4296 34 1 3.2001 -0.1846 -5.4910 35 1 2.4085 2.1457 -5.5242 36 1 1.4276 3.1452 -3.5002 37 1 1.2360 1.8155 -1.4376 38 1 1.1489 0.5382 2.5435 39 1 1.6535 -2.7229 4.7959 40 1 0.6933 -2.4891 3.3030 41 1 -3.6123 -1.7541 5.5173 42 1 0.2741 0.8899 4.9920 43 1 0.8067 0.0488 6.4744 44 1 2.6308 1.9950 5.1509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220893722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:05 Heat of formation + Delta-G solvation = -49.175983 kcal Electronic energy + Delta-G solvation = -27326.197407 eV Core-core repulsion = 23438.574773 eV Total energy + Delta-G solvation = -3887.622635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72644 -39.66139 -38.33326 -37.24510 -35.45059 -34.02851 -32.56107 -31.73342 -30.95663 -29.81802 -28.77483 -27.96182 -24.95470 -23.92911 -23.00659 -22.36437 -21.14527 -20.66019 -19.80402 -18.56996 -17.82888 -17.27215 -17.18246 -16.42648 -16.01163 -15.74473 -15.52721 -15.36511 -14.67820 -14.49044 -14.28037 -13.85749 -13.72944 -13.60630 -13.25571 -13.11860 -12.87703 -12.73586 -12.48727 -12.42573 -12.10070 -11.91363 -11.76998 -11.41060 -11.30135 -11.19219 -10.97333 -10.85971 -10.40251 -10.01766 -9.64092 -9.39114 -9.21448 -9.08051 -9.00789 -8.71234 -8.37883 -7.15606 -6.37472 -3.31026 1.11940 1.24268 2.54904 2.70616 3.23353 3.34123 3.57629 3.58125 3.59179 4.15240 4.48399 4.48990 4.63957 4.67979 4.72393 4.78080 4.81839 4.92493 4.96895 5.14409 5.15799 5.21277 5.34516 5.38736 5.40848 5.50013 5.55247 5.73167 5.79344 5.86351 5.99225 6.03229 6.11796 6.18998 6.26272 6.31376 6.41253 6.42840 6.54857 6.74351 7.22082 7.50656 7.65658 7.67412 8.23508 8.32643 8.95409 9.44764 10.10320 11.12326 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003083 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.940318 B = 9079.781708 C = 9357.503023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 H 0.098 0.902 4 O -0.284 6.284 5 C 0.135 3.865 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.520 3.480 12 O -0.528 6.528 13 N -0.689 5.689 14 C 0.143 3.857 15 H 0.102 0.898 16 C 0.124 3.876 17 N -0.607 5.607 18 C -0.320 4.320 19 H 0.080 0.920 20 C -0.028 4.028 21 N -0.930 5.930 22 Si 1.083 2.917 23 H -0.301 1.301 24 H -0.288 1.288 25 H -0.299 1.299 26 C 0.064 3.936 27 C 0.085 3.915 28 H 0.079 0.921 29 O -0.559 6.559 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.262 0.738 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 8.162 -15.021 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.010 3.990 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.089 3.911 6 C -0.170 4.170 7 C -0.099 4.099 8 C -0.182 4.182 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.305 3.695 12 O -0.404 6.404 13 N -0.340 5.340 14 C 0.037 3.963 15 H 0.120 0.880 16 C -0.003 4.003 17 N -0.336 5.336 18 C -0.447 4.447 19 H 0.098 0.902 20 C -0.227 4.227 21 N -0.572 5.572 22 Si 0.918 3.082 23 H -0.230 1.230 24 H -0.215 1.215 25 H -0.228 1.228 26 C -0.061 4.061 27 C 0.025 3.975 28 H 0.097 0.903 29 O -0.364 6.364 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.242 0.758 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.421 8.081 -14.521 20.747 hybrid contribution -0.136 -0.463 -0.288 0.562 sum 12.285 7.618 -14.810 20.695 Atomic orbital electron populations 1.22346 0.92209 1.04848 1.03983 1.22199 0.95962 0.96888 0.83994 0.88406 1.86218 1.80766 1.36971 1.15701 1.19123 0.94859 0.90327 0.86808 1.20491 1.03765 1.01526 0.91232 1.20970 0.97906 0.94015 0.97040 1.21056 1.02555 0.95865 0.98694 1.20954 0.97126 0.99427 0.92272 1.21362 1.07130 0.94337 1.00345 1.19918 0.80685 0.84895 0.84040 1.90716 1.37553 1.25640 1.86446 1.45356 1.52834 1.31822 1.04023 1.22261 0.98516 0.92650 0.82867 0.88022 1.22079 0.89965 0.92865 0.95345 1.44664 1.08862 1.17376 1.62663 1.20186 0.84748 1.13724 1.26068 0.90214 1.25818 0.95133 1.02652 0.99058 1.70894 1.08899 1.31807 1.45576 0.83675 0.72849 0.75686 0.75991 1.22979 1.21538 1.22804 1.22906 0.92507 0.92592 0.98115 1.23180 0.95375 0.83322 0.95647 0.90300 1.86451 1.90569 1.18978 1.40353 0.90448 0.89732 0.90786 0.85065 0.85418 0.86018 0.85787 0.85147 0.75807 0.94382 0.92528 0.92808 0.92242 0.94179 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.07 37.16 0.34 -1.79 16 2 C 0.07 0.92 2.65 -27.88 -0.07 0.85 16 3 H 0.10 1.07 6.29 -51.93 -0.33 0.75 16 4 O -0.28 -4.24 9.33 -39.36 -0.37 -4.60 16 5 C 0.13 1.71 6.60 -39.22 -0.26 1.45 16 6 C -0.15 -1.72 9.99 -39.43 -0.39 -2.12 16 7 C -0.08 -0.75 10.04 -39.61 -0.40 -1.14 16 8 C -0.16 -1.42 10.04 -39.56 -0.40 -1.82 16 9 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 10 C -0.21 -2.27 8.25 -39.43 -0.33 -2.60 16 11 C 0.52 8.55 7.23 -10.99 -0.08 8.47 16 12 O -0.53 -10.56 16.14 -14.36 -0.23 -10.79 16 13 N -0.69 -10.86 4.71 -51.62 -0.24 -11.10 16 14 C 0.14 2.39 3.31 -65.66 -0.22 2.17 16 15 H 0.10 1.66 7.54 -51.93 -0.39 1.27 16 16 C 0.12 2.46 6.95 -2.41 -0.02 2.44 16 17 N -0.61 -13.95 3.36 -169.93 -0.57 -14.52 16 18 C -0.32 -8.82 10.59 -15.06 -0.16 -8.98 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 20 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 21 N -0.93 -28.53 13.70 55.49 0.76 -27.77 16 22 Si 1.08 25.48 24.50 -169.99 -4.17 21.31 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -5.99 5.44 56.52 0.31 -5.69 16 25 H -0.30 -6.71 6.49 56.52 0.37 -6.34 16 26 C 0.06 1.25 4.40 -3.06 -0.01 1.24 16 27 C 0.08 1.30 4.12 -24.90 -0.10 1.20 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 O -0.56 -7.37 12.67 -35.23 -0.45 -7.81 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 32 H 0.07 0.76 6.94 -51.93 -0.36 0.40 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.21 5.45 -52.48 -0.29 0.92 16 38 H 0.41 6.00 7.81 -40.82 -0.32 5.68 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.26 7.98 8.73 -40.82 -0.36 7.63 16 42 H 0.06 1.21 6.09 -51.93 -0.32 0.89 16 43 H 0.04 0.83 3.97 -51.93 -0.21 0.62 16 44 H 0.38 3.48 9.11 45.56 0.42 3.90 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -34.65 354.58 -7.78 -42.43 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.27 Total: 10.14 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.59 Total: -2.63 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.05 Total: -53.39 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.05 Total: -23.21 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.17 Total: 21.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.65 -7.78 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220893722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.748 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds