Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47455 * 2 1 4 4 O 1.42905 * 109.46911 * 240.00447 * 2 1 3 5 5 C 1.35907 * 116.99998 * 84.94428 * 4 2 1 6 6 C 1.38728 * 120.05676 * 174.71230 * 5 4 2 7 7 C 1.38147 * 119.94201 * 179.74444 * 6 5 4 8 8 C 1.38263 * 120.05639 * 0.50649 * 7 6 5 9 9 C 1.38264 * 120.11281 * 359.77201 * 8 7 6 10 10 C 1.38149 * 120.05248 * 359.97070 * 9 8 7 11 11 C 1.50698 * 109.47138 * 120.00803 * 2 1 3 12 12 O 1.21286 * 120.00117 * 119.99657 * 11 2 1 13 13 N 1.34771 * 119.99730 * 299.99598 * 11 2 1 14 14 C 1.46502 * 119.99786 * 179.97438 * 13 11 2 15 15 H 1.08994 * 110.88694 * 31.12306 * 14 13 11 16 16 C 1.55133 * 111.19429 * 267.18720 * 14 13 11 17 17 N 1.47426 * 104.72475 * 279.19383 * 16 14 13 18 18 C 1.36927 * 125.65020 * 155.81528 * 17 16 14 19 19 H 1.08002 * 120.00320 * 352.83244 * 18 17 16 20 20 C 1.38814 * 120.00262 * 172.83373 * 18 17 16 21 21 N 1.31613 * 120.00223 * 167.40555 * 20 18 17 22 22 Si 1.86804 * 119.99588 * 347.40827 * 20 18 17 23 23 H 1.48507 * 109.46754 * 185.91257 * 22 20 18 24 24 H 1.48495 * 109.47281 * 65.91501 * 22 20 18 25 25 H 1.48498 * 109.47063 * 305.91376 * 22 20 18 26 26 C 1.47021 * 108.70065 * 335.55103 * 17 16 14 27 27 C 1.54326 * 107.27079 * 1.28867 * 26 17 16 28 28 H 1.09000 * 110.72149 * 263.64988 * 27 26 17 29 29 O 1.42903 * 110.71962 * 140.55608 * 27 26 17 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47095 * 299.99715 * 1 2 3 32 32 H 1.09002 * 109.47024 * 59.99316 * 1 2 3 33 33 H 1.07999 * 120.02627 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.96729 * 180.27355 * 7 6 5 35 35 H 1.07997 * 119.94231 * 179.74167 * 8 7 6 36 36 H 1.07995 * 119.97169 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02595 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00236 * 0.02562 * 13 11 2 39 39 H 1.08997 * 110.49784 * 160.34856 * 16 14 13 40 40 H 1.09005 * 110.34137 * 37.95335 * 16 14 13 41 41 H 0.97002 * 120.00584 * 5.08002 * 21 20 18 42 42 H 1.09004 * 109.88378 * 120.70107 * 26 17 16 43 43 H 1.08994 * 109.88625 * 241.86889 * 26 17 16 44 44 H 0.96696 * 114.00027 * 61.45388 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1114 0.0625 -2.3045 6 6 2.6692 -0.4968 -3.4450 7 6 2.7699 0.2518 -4.6016 8 6 2.3250 1.5608 -4.6202 9 6 1.7740 2.1224 -3.4833 10 6 1.6661 1.3762 -2.3256 11 6 2.0324 -0.7106 1.2303 12 8 2.7296 -1.6967 1.1189 13 7 1.7068 -0.2502 2.4544 14 6 2.1947 -0.9413 3.6505 15 1 3.1647 -1.4022 3.4645 16 6 1.1681 -1.9921 4.1491 17 7 0.1743 -1.2133 4.9102 18 6 -1.1232 -1.5845 5.1418 19 1 -1.5287 -2.4608 4.6581 20 6 -1.9174 -0.8346 5.9984 21 7 -3.2178 -1.0342 6.0341 22 14 -1.1403 0.4581 7.1006 23 1 -2.1708 1.0141 8.0140 24 1 -0.5795 1.5495 6.2642 25 1 -0.0529 -0.1617 7.8998 26 6 0.8090 0.0251 5.3848 27 6 2.2613 0.0248 4.8628 28 1 2.9444 -0.3530 5.6234 29 8 2.6484 1.3352 4.4442 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.0209 -1.5178 -3.4296 34 1 3.2001 -0.1846 -5.4910 35 1 2.4085 2.1457 -5.5242 36 1 1.4276 3.1452 -3.5002 37 1 1.2360 1.8155 -1.4376 38 1 1.1489 0.5382 2.5435 39 1 1.6535 -2.7229 4.7959 40 1 0.6933 -2.4891 3.3030 41 1 -3.6123 -1.7541 5.5173 42 1 0.2741 0.8899 4.9920 43 1 0.8067 0.0488 6.4744 44 1 2.6308 1.9950 5.1509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220893722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = -76.045709 kcal Electronic energy + Delta-G solvation = -27327.362566 eV Core-core repulsion = 23438.574773 eV Total energy + Delta-G solvation = -3888.787793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79612 -40.83663 -39.58738 -38.22421 -36.79251 -35.51404 -34.17144 -33.10783 -31.76572 -30.70047 -30.28855 -29.47322 -26.24426 -25.50445 -23.84966 -23.25431 -22.77467 -21.87972 -21.21062 -19.71927 -19.47144 -18.58603 -18.35016 -17.66615 -17.04738 -16.84626 -16.73186 -16.54712 -15.84441 -15.72517 -15.47561 -15.39821 -14.97151 -14.82270 -14.45595 -14.40108 -14.16080 -13.97835 -13.73755 -13.49889 -13.37134 -13.16859 -12.92385 -12.91682 -12.46131 -12.31987 -12.13582 -12.04970 -11.76620 -11.51329 -11.29730 -11.07522 -10.91554 -10.59417 -10.21825 -9.95403 -9.20807 -9.12826 -8.63328 -5.48996 0.38426 0.46676 1.36056 1.36928 1.51721 1.53963 1.72968 2.50215 2.55904 2.83841 2.92998 3.13520 3.31061 3.43377 3.60418 3.63119 3.66806 3.79295 3.92290 3.99047 4.14219 4.27600 4.35041 4.38615 4.40932 4.50214 4.53507 4.59518 4.60571 4.72973 4.74554 4.79055 4.95633 5.00554 5.08734 5.34682 5.37112 5.47627 5.48496 5.59850 5.83200 6.05117 6.30668 6.45300 6.79415 6.83183 7.06145 7.38445 8.03785 8.87266 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003083 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.940318 B = 9079.781708 C = 9357.503023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.127 0.873 4 O -0.314 6.314 5 C 0.103 3.897 6 C -0.173 4.173 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.082 4.082 10 C -0.219 4.219 11 C 0.516 3.484 12 O -0.570 6.570 13 N -0.683 5.683 14 C 0.146 3.854 15 H 0.110 0.890 16 C 0.122 3.878 17 N -0.623 5.623 18 C -0.309 4.309 19 H 0.038 0.962 20 C -0.086 4.086 21 N -0.966 5.966 22 Si 1.120 2.880 23 H -0.319 1.319 24 H -0.238 1.238 25 H -0.278 1.278 26 C 0.056 3.944 27 C 0.109 3.891 28 H 0.109 0.891 29 O -0.556 6.556 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.413 0.587 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.244 0.756 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.582 11.545 -15.744 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.144 0.856 4 O -0.227 6.227 5 C 0.059 3.941 6 C -0.192 4.192 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.100 4.100 10 C -0.238 4.238 11 C 0.302 3.698 12 O -0.449 6.449 13 N -0.334 5.334 14 C 0.040 3.960 15 H 0.127 0.873 16 C -0.004 4.004 17 N -0.352 5.352 18 C -0.437 4.437 19 H 0.056 0.944 20 C -0.278 4.278 21 N -0.611 5.611 22 Si 0.947 3.053 23 H -0.249 1.249 24 H -0.163 1.163 25 H -0.206 1.206 26 C -0.068 4.068 27 C 0.048 3.952 28 H 0.127 0.873 29 O -0.364 6.364 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 14.790 11.493 -15.278 24.171 hybrid contribution -0.854 -1.594 -0.216 1.821 sum 13.936 9.899 -15.494 23.071 Atomic orbital electron populations 1.22301 0.91527 1.03609 1.05228 1.22184 0.96222 0.97475 0.82463 0.85608 1.86170 1.81526 1.38399 1.16649 1.19424 0.96838 0.91444 0.86420 1.20702 1.04588 1.01828 0.92057 1.21302 0.97361 0.94315 0.96978 1.21477 1.01036 0.95696 0.99654 1.21347 0.96414 1.00538 0.91715 1.21553 1.07032 0.93580 1.01585 1.20537 0.79815 0.84369 0.85047 1.90687 1.39546 1.27528 1.87091 1.45343 1.52566 1.31705 1.03787 1.22157 0.97436 0.92565 0.83846 0.87252 1.22156 0.90049 0.93927 0.94292 1.44610 1.07950 1.19405 1.63195 1.19998 0.87116 1.11990 1.24618 0.94370 1.27318 0.94709 1.05298 1.00471 1.71025 1.10606 1.32449 1.47020 0.83323 0.72430 0.74884 0.74636 1.24863 1.16278 1.20602 1.23110 0.94984 0.90457 0.98257 1.22922 0.93131 0.84358 0.94752 0.87333 1.86429 1.89968 1.18433 1.41618 0.92921 0.89172 0.88739 0.85752 0.82968 0.83145 0.83085 0.83980 0.75021 0.93448 0.95281 0.94705 0.92454 0.93780 0.74683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 9.07 71.98 0.65 -3.38 16 2 C 0.08 1.98 2.65 29.85 0.08 2.06 16 3 H 0.13 2.52 6.29 -2.39 -0.02 2.50 16 4 O -0.31 -9.53 9.33 -73.46 -0.69 -10.21 16 5 C 0.10 2.59 6.60 22.50 0.15 2.74 16 6 C -0.17 -3.91 9.99 22.37 0.22 -3.69 16 7 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 8 C -0.16 -2.28 10.04 22.28 0.22 -2.06 16 9 C -0.08 -1.25 10.04 22.25 0.22 -1.03 16 10 C -0.22 -4.25 8.25 22.37 0.18 -4.07 16 11 C 0.52 16.89 7.23 87.66 0.63 17.53 16 12 O -0.57 -23.25 16.14 15.99 0.26 -23.00 16 13 N -0.68 -20.66 4.71 -435.61 -2.05 -22.71 16 14 C 0.15 4.62 3.31 46.46 0.15 4.77 16 15 H 0.11 3.37 7.54 -2.39 -0.02 3.36 16 16 C 0.12 4.83 6.95 86.93 0.60 5.43 16 17 N -0.62 -28.29 3.36 -691.54 -2.32 -30.61 16 18 C -0.31 -17.50 10.59 84.04 0.89 -16.61 16 19 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 20 C -0.09 -4.99 5.50 84.86 0.47 -4.52 16 21 N -0.97 -61.42 13.70 21.65 0.30 -61.12 16 22 Si 1.12 49.82 24.50 68.60 1.68 51.50 16 23 H -0.32 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.24 -8.70 5.44 99.48 0.54 -8.16 16 25 H -0.28 -11.38 6.49 99.48 0.65 -10.73 16 26 C 0.06 2.01 4.40 86.73 0.38 2.40 16 27 C 0.11 2.90 4.12 31.78 0.13 3.03 16 28 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 29 O -0.56 -11.90 12.67 -148.98 -1.89 -13.79 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 2.01 7.56 -2.39 -0.02 1.99 16 32 H 0.09 1.84 6.94 -2.39 -0.02 1.83 16 33 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.14 2.28 5.45 -2.91 -0.02 2.26 16 38 H 0.41 11.35 7.81 -92.71 -0.72 10.62 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.24 15.76 8.73 -92.71 -0.81 14.95 16 42 H 0.06 2.10 6.09 -2.38 -0.01 2.08 16 43 H 0.04 1.62 3.97 -2.39 -0.01 1.61 16 44 H 0.40 5.01 9.11 -74.06 -0.67 4.33 16 Total: -1.00 -79.76 354.58 -0.11 -79.86 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.62 Total: 28.60 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.22 Total: 1.47 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.07 Total: -114.45 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.32 Total: -47.00 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.68 Total: 51.50 kcal Total: -79.76 -0.11 -79.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220893722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.816 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds