Wall clock time and date at job start Tue Mar 31 2020 13:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46982 * 2 1 4 4 C 1.34682 * 116.99692 * 180.02562 * 3 2 1 5 5 O 1.21426 * 120.00364 * 359.97438 * 4 3 2 6 6 C 1.48076 * 119.99837 * 180.02562 * 4 3 2 7 7 C 1.39348 * 119.72248 * 179.97438 * 6 4 3 8 8 C 1.38596 * 119.05317 * 179.97438 * 7 6 4 9 9 C 1.38627 * 118.48516 * 359.97438 * 8 7 6 10 10 C 1.38577 * 119.36306 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.54535 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.47334 * 359.97438 * 11 10 9 13 13 C 1.42901 * 114.00080 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.89150 * 327.57786 * 13 12 11 15 15 C 1.55161 * 111.00632 * 203.64977 * 13 12 11 16 16 C 1.54321 * 102.94354 * 206.42850 * 15 13 12 17 17 N 1.47018 * 107.27205 * 22.19052 * 16 15 13 18 18 C 1.36936 * 125.64880 * 181.02254 * 17 16 15 19 19 H 1.08001 * 120.00726 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99934 * 0.04802 * 18 17 16 21 21 N 1.31618 * 119.99895 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47354 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47276 * 120.00067 * 22 20 18 25 25 H 1.48505 * 109.46904 * 239.99687 * 22 20 18 26 26 C 1.47423 * 108.70490 * 1.06224 * 17 16 15 27 27 N 1.31501 * 120.90691 * 359.71954 * 10 9 8 28 28 H 1.09003 * 109.47564 * 59.99334 * 1 2 3 29 29 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46967 * 299.99874 * 1 2 3 31 31 H 1.08998 * 109.46694 * 240.00045 * 2 1 3 32 32 H 1.08994 * 109.47422 * 120.00036 * 2 1 3 33 33 H 1.07996 * 120.47658 * 0.02562 * 7 6 4 34 34 H 1.07994 * 120.75199 * 180.02562 * 8 7 6 35 35 H 1.08008 * 120.31320 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47104 * 120.00475 * 11 10 9 37 37 H 1.09007 * 109.47254 * 239.99938 * 11 10 9 38 38 H 1.09002 * 110.71681 * 324.79027 * 15 13 12 39 39 H 1.09002 * 110.71404 * 88.05837 * 15 13 12 40 40 H 1.09003 * 109.87771 * 262.77823 * 16 15 13 41 41 H 1.08995 * 110.01308 * 141.68650 * 16 15 13 42 42 H 0.96997 * 119.99780 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36800 * 217.02996 * 26 17 16 44 44 H 1.09005 * 110.36590 * 94.70563 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3492 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9152 2.9137 0.0000 7 6 5.2975 3.0896 0.0000 8 6 5.8122 4.3764 -0.0001 9 6 4.9265 5.4428 -0.0006 10 6 3.5633 5.1939 -0.0006 11 6 2.5967 6.3501 -0.0006 12 8 3.3248 7.5796 0.0000 13 6 2.4976 8.7449 -0.0006 14 1 1.5721 8.5643 -0.5472 15 6 3.2581 9.9665 -0.5811 16 6 2.5575 11.1633 0.0958 17 7 1.9158 10.6589 1.3186 18 6 1.1729 11.4035 2.1955 19 1 0.7418 10.9377 3.0693 20 6 0.9736 12.7572 1.9611 21 7 1.4991 13.3250 0.8963 22 14 -0.0403 13.7728 3.1568 23 1 -0.5162 12.9048 4.2639 24 1 0.7967 14.8674 3.7102 25 1 -1.2082 14.3534 2.4467 26 6 2.2052 9.2189 1.4449 27 7 3.1015 3.9626 -0.0055 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9583 2.2354 -0.0008 34 1 6.8790 4.5444 -0.0005 35 1 5.2954 6.4579 -0.0002 36 1 1.9693 6.2992 -0.8906 37 1 1.9694 6.2993 0.8894 38 1 4.3122 9.9307 -0.3061 39 1 3.1423 10.0137 -1.6639 40 1 1.8044 11.5790 -0.5736 41 1 3.2901 11.9291 0.3505 42 1 1.3601 14.2709 0.7327 43 1 1.3408 8.6922 1.8493 44 1 3.0774 9.0615 2.0795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223706802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:56 Heat of formation + Delta-G solvation = -82.283623 kcal Electronic energy + Delta-G solvation = -25842.072614 eV Core-core repulsion = 21953.014325 eV Total energy + Delta-G solvation = -3889.058290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00039 -40.88867 -39.80157 -37.85446 -37.55251 -34.35383 -33.87340 -33.25812 -32.37679 -31.06257 -29.02495 -27.84341 -26.53292 -26.18067 -24.09341 -23.23090 -22.29560 -21.94761 -21.78833 -19.45845 -18.98676 -18.21285 -17.87536 -17.73037 -17.15092 -16.87483 -16.68616 -16.49838 -16.10703 -15.71004 -15.39847 -15.03180 -14.79875 -14.56863 -14.32610 -14.10023 -13.83420 -13.69945 -13.61951 -13.12416 -12.98871 -12.96900 -12.88412 -12.76979 -12.53043 -12.33844 -12.10222 -11.97759 -11.94610 -11.77698 -11.57424 -11.42672 -11.05471 -10.72539 -10.70466 -10.66622 -10.08212 -8.91142 -7.85450 -5.21661 -0.60734 0.07650 1.23847 1.42639 1.47403 1.48055 1.58550 2.16551 2.50822 2.62285 3.15416 3.33729 3.53566 3.75900 3.80637 3.85699 3.87174 3.98859 4.01727 4.04458 4.08957 4.20938 4.29233 4.33046 4.44316 4.45513 4.57361 4.67747 4.76475 4.79553 4.90380 4.96153 4.97114 5.03875 5.07498 5.08974 5.13726 5.32847 5.45367 5.46737 5.66024 5.75689 6.12840 6.24085 6.36990 6.73188 7.09886 7.75962 8.39520 9.25050 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002237 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.820363 B =12512.364547 C =13503.612448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.528 3.472 5 O -0.518 6.518 6 C 0.066 3.934 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.114 4.114 10 C 0.116 3.884 11 C 0.112 3.888 12 O -0.373 6.373 13 C 0.095 3.905 14 H 0.081 0.919 15 C -0.122 4.122 16 C 0.184 3.816 17 N -0.626 5.626 18 C -0.242 4.242 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.112 3.888 27 N -0.455 5.455 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.011 0.989 42 H 0.248 0.752 43 H 0.044 0.956 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -25.171 -4.696 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.372 3.628 5 O -0.407 6.407 6 C -0.070 4.070 7 C -0.124 4.124 8 C -0.095 4.095 9 C -0.133 4.133 10 C -0.025 4.025 11 C 0.035 3.965 12 O -0.291 6.291 13 C 0.036 3.964 14 H 0.099 0.901 15 C -0.160 4.160 16 C 0.059 3.941 17 N -0.354 5.354 18 C -0.371 4.371 19 H 0.100 0.900 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.014 4.014 27 N -0.168 5.168 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.010 -25.488 -4.674 26.392 hybrid contribution -0.021 0.923 0.644 1.125 sum 4.989 -24.565 -4.030 25.388 Atomic orbital electron populations 1.21833 0.90651 1.04457 1.03531 1.23420 0.97053 0.78633 1.03107 1.86697 1.22634 1.34044 1.82771 1.20902 0.81252 0.88517 0.72100 1.90817 1.61030 1.41807 1.47077 1.20045 0.91323 0.89805 1.05812 1.22346 0.93640 1.00356 0.96014 1.22086 1.02786 0.90175 0.94427 1.22539 0.93144 1.02614 0.95043 1.20973 0.93746 0.90823 0.96971 1.20974 0.91740 0.80909 1.02833 1.87744 1.33425 1.12790 1.95116 1.23096 0.93652 0.84228 0.95376 0.90070 1.22798 0.99977 0.92649 1.00542 1.20945 0.93865 0.92580 0.86714 1.44662 1.60198 1.04845 1.25717 1.19486 1.23890 0.91163 1.02592 0.90007 1.25668 1.02355 0.97907 0.99977 1.70172 1.49975 1.10824 1.28993 0.84994 0.77623 0.78414 0.78198 1.19053 1.21908 1.21765 1.22111 0.98032 0.84805 0.96424 1.67047 1.40598 0.98827 1.10357 0.91572 0.87666 0.91697 0.90549 0.90664 0.81579 0.79633 0.81966 0.89774 0.90715 0.90356 0.89153 0.96397 0.97040 0.94282 0.93777 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.35 -8.02 10.04 -55.92 -0.56 -8.58 16 4 C 0.53 12.82 7.95 70.43 0.56 13.38 16 5 O -0.52 -13.34 16.11 20.07 0.32 -13.02 16 6 C 0.07 1.55 6.75 41.89 0.28 1.83 16 7 C -0.10 -1.80 9.63 22.62 0.22 -1.58 16 8 C -0.07 -1.00 10.17 22.45 0.23 -0.77 16 9 C -0.11 -2.18 9.42 22.44 0.21 -1.97 16 10 C 0.12 2.73 6.78 42.69 0.29 3.02 16 11 C 0.11 2.73 6.36 71.24 0.45 3.18 16 12 O -0.37 -10.26 8.60 -148.98 -1.28 -11.54 16 13 C 0.10 3.11 3.49 31.99 0.11 3.23 16 14 H 0.08 2.53 7.90 -2.39 -0.02 2.51 16 15 C -0.12 -4.29 6.69 31.78 0.21 -4.07 16 16 C 0.18 8.95 5.38 86.73 0.47 9.42 16 17 N -0.63 -32.19 3.39 -691.99 -2.35 -34.54 16 18 C -0.24 -13.61 10.28 84.04 0.86 -12.75 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 21 N -0.95 -56.91 10.31 21.65 0.22 -56.69 16 22 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 26 C 0.11 4.54 6.97 86.86 0.61 5.15 16 27 N -0.45 -11.66 10.03 -173.12 -1.74 -13.40 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.17 2.28 7.64 -2.91 -0.02 2.26 16 34 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 2.95 6.99 -2.91 -0.02 2.93 16 36 H 0.08 1.88 8.11 -2.38 -0.02 1.86 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.02 0.96 7.38 -2.39 -0.02 0.95 16 41 H 0.01 0.62 7.50 -2.39 -0.02 0.61 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -70.81 372.31 3.79 -67.02 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.99 Total: 7.98 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.15 Total: 15.08 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.86 Total: -104.63 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.52 Total: -33.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.81 3.79 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223706802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.262 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds