Wall clock time and date at job start Tue Mar 31 2020 13:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46925 * 2 1 4 4 C 1.34675 * 116.99778 * 179.97438 * 3 2 1 5 5 O 1.21433 * 120.00192 * 0.02562 * 4 3 2 6 6 C 1.48069 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.39350 * 119.72878 * 180.02562 * 6 4 3 8 8 C 1.38589 * 119.05639 * 180.02562 * 7 6 4 9 9 C 1.38626 * 118.49083 * 0.24899 * 8 7 6 10 10 C 1.38581 * 119.35838 * 359.50522 * 9 8 7 11 11 C 1.50703 * 119.55093 * 180.25206 * 10 9 8 12 12 O 1.42895 * 109.46694 * 0.25275 * 11 10 9 13 13 C 1.42903 * 113.99941 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.64139 * 31.68875 * 13 12 11 15 15 C 1.55154 * 110.71987 * 155.02276 * 13 12 11 16 16 C 1.54915 * 101.58095 * 153.86599 * 15 13 12 17 17 N 1.47422 * 104.82929 * 322.98886 * 16 15 13 18 18 C 1.36937 * 125.64623 * 204.08640 * 17 16 15 19 19 H 1.08001 * 119.99678 * 169.98770 * 18 17 16 20 20 C 1.38809 * 120.00137 * 349.99107 * 18 17 16 21 21 N 1.31625 * 119.99988 * 350.41968 * 20 18 17 22 22 Si 1.86805 * 120.00041 * 170.41912 * 20 18 17 23 23 H 1.48498 * 109.47143 * 94.13755 * 22 20 18 24 24 H 1.48503 * 109.47143 * 214.13911 * 22 20 18 25 25 H 1.48501 * 109.46990 * 334.13609 * 22 20 18 26 26 C 1.47025 * 108.70300 * 24.13247 * 17 16 15 27 27 N 1.31513 * 120.90528 * 0.50827 * 10 9 8 28 28 H 1.08997 * 109.47020 * 59.99859 * 1 2 3 29 29 H 1.09006 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46899 * 299.99478 * 1 2 3 31 31 H 1.09003 * 109.46926 * 240.00045 * 2 1 3 32 32 H 1.08997 * 109.47020 * 120.00141 * 2 1 3 33 33 H 1.07993 * 120.47118 * 359.97438 * 7 6 4 34 34 H 1.08003 * 120.75559 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.31999 * 179.74783 * 9 8 7 36 36 H 1.09001 * 109.47125 * 120.25170 * 11 10 9 37 37 H 1.08998 * 109.47130 * 240.25599 * 11 10 9 38 38 H 1.09001 * 111.00656 * 271.94019 * 15 13 12 39 39 H 1.09002 * 111.00868 * 35.79433 * 15 13 12 40 40 H 1.08999 * 110.36899 * 204.14942 * 16 15 13 41 41 H 1.08997 * 110.36697 * 81.83215 * 16 15 13 42 42 H 0.96999 * 119.99610 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.87800 * 239.51724 * 26 17 16 44 44 H 1.08998 * 109.88483 * 118.35935 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0889 0.5824 0.0005 6 6 3.9151 2.9136 0.0011 7 6 5.2974 3.0896 0.0012 8 6 5.8121 4.3764 0.0023 9 6 4.9264 5.4429 0.0086 10 6 3.5632 5.1939 0.0032 11 6 2.5965 6.3501 0.0043 12 8 3.3246 7.5796 0.0053 13 6 2.4975 8.7449 0.0070 14 1 1.5676 8.5553 0.5431 15 6 3.2527 9.9533 0.6208 16 6 2.5400 11.1460 -0.0642 17 7 2.2619 10.6822 -1.4357 18 6 2.0804 11.4868 -2.5288 19 1 2.0422 11.0539 -3.5175 20 6 1.9456 12.8587 -2.3661 21 7 1.8028 13.3676 -1.1606 22 14 1.9670 13.9828 -3.8579 23 1 0.5742 14.2380 -4.3054 24 1 2.6152 15.2698 -3.4988 25 1 2.7286 13.3343 -4.9555 26 6 2.2106 9.2129 -1.4352 27 7 3.1014 3.9625 0.0022 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9582 2.2355 0.0011 34 1 6.8790 4.5445 0.0027 35 1 5.2953 6.4579 0.0138 36 1 1.9692 6.3000 -0.8857 37 1 1.9694 6.2984 0.8943 38 1 3.1208 9.9881 1.7022 39 1 4.3104 9.9272 0.3584 40 1 3.1936 12.0181 -0.0838 41 1 1.6096 11.3799 0.4532 42 1 1.7082 14.3263 -1.0470 43 1 2.9674 8.8154 -2.1114 44 1 1.2210 8.8764 -1.7443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223706803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:59 Heat of formation + Delta-G solvation = -64.356408 kcal Electronic energy + Delta-G solvation = -25851.424569 eV Core-core repulsion = 21963.143662 eV Total energy + Delta-G solvation = -3888.280907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13149 -39.99991 -38.42392 -36.94428 -36.01543 -33.09290 -32.75589 -32.05935 -31.60666 -29.25159 -27.54448 -26.60250 -25.70323 -24.27964 -23.40786 -22.42490 -21.32550 -20.32081 -20.16419 -18.58237 -17.38745 -17.00291 -16.90791 -16.65151 -16.16249 -16.00633 -15.40349 -15.03620 -14.65619 -14.63520 -14.16119 -13.98781 -13.69987 -13.49259 -13.29298 -13.10764 -12.46816 -12.40912 -12.27776 -12.10976 -11.88987 -11.78857 -11.62717 -11.25516 -11.09751 -10.88066 -10.85485 -10.79654 -10.40585 -10.23931 -10.11061 -9.86093 -9.81797 -9.70863 -9.49775 -9.08439 -8.60981 -6.82769 -5.76790 -3.09489 0.24679 0.87648 2.12389 2.20859 3.26040 3.39081 3.44909 3.47192 3.47625 4.10894 4.43366 4.48807 4.51616 4.58438 4.62784 4.66937 4.84475 4.90460 5.11401 5.19151 5.30514 5.35100 5.36714 5.42994 5.44125 5.49707 5.52622 5.63680 5.68116 5.72015 5.80801 5.86490 6.04586 6.24377 6.26503 6.46975 6.51583 6.57420 6.67767 7.22132 7.43905 7.48119 7.54876 7.60845 7.76054 8.23579 9.17144 9.78869 10.45454 11.36478 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002189 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.313453 B =12788.897055 C =13335.422734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.332 6.332 4 C 0.529 3.471 5 O -0.503 6.503 6 C 0.087 3.913 7 C -0.110 4.110 8 C -0.085 4.085 9 C -0.109 4.109 10 C 0.131 3.869 11 C 0.112 3.888 12 O -0.378 6.378 13 C 0.080 3.920 14 H 0.068 0.932 15 C -0.138 4.138 16 C 0.173 3.827 17 N -0.601 5.601 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.115 3.885 27 N -0.434 5.434 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.253 0.747 43 H 0.034 0.966 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -23.537 5.772 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.247 6.247 4 C 0.372 3.628 5 O -0.391 6.391 6 C -0.050 4.050 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.129 4.129 10 C -0.009 4.009 11 C 0.035 3.965 12 O -0.297 6.297 13 C 0.022 3.978 14 H 0.086 0.914 15 C -0.177 4.177 16 C 0.048 3.952 17 N -0.328 5.328 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.011 4.011 27 N -0.147 5.147 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.005 -23.810 5.726 24.673 hybrid contribution 0.550 0.538 -0.787 1.101 sum 3.554 -23.273 4.938 24.055 Atomic orbital electron populations 1.21805 0.92270 1.02951 1.03946 1.23124 0.95755 0.79932 1.02626 1.86697 1.22880 1.32089 1.83067 1.20765 0.81084 0.88409 0.72508 1.90842 1.60758 1.41389 1.46096 1.19837 0.90273 0.90169 1.04706 1.22070 0.94424 0.99151 0.97358 1.21692 1.01237 0.91442 0.96668 1.22415 0.93619 1.01763 0.95071 1.21020 0.93015 0.91215 0.95685 1.20927 0.91540 0.81702 1.02368 1.87804 1.33815 1.12779 1.95262 1.23263 0.93267 0.83971 0.97273 0.91362 1.23141 1.00498 0.95001 0.99013 1.21432 0.97090 0.92975 0.83702 1.44366 1.83746 0.98906 1.05805 1.19023 1.42907 0.88091 0.85656 0.90602 1.24829 1.01714 0.97000 0.96865 1.69946 1.55363 1.11460 1.19866 0.86114 0.77606 0.80330 0.81774 1.21595 1.21574 1.20580 1.21737 0.98036 0.87186 0.94156 1.67162 1.39684 0.98391 1.09422 0.91220 0.90162 0.91269 0.91074 0.91097 0.83306 0.83388 0.82402 0.90483 0.90718 0.91701 0.91087 0.90819 0.95310 0.93652 0.94832 0.95979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.33 -3.88 10.04 -40.42 -0.41 -4.29 16 4 C 0.53 6.56 7.95 34.76 0.28 6.84 16 5 O -0.50 -6.67 16.11 -19.21 -0.31 -6.98 16 6 C 0.09 1.06 6.75 -83.02 -0.56 0.50 16 7 C -0.11 -1.09 9.63 -39.04 -0.38 -1.47 16 8 C -0.08 -0.76 10.17 -39.31 -0.40 -1.16 16 9 C -0.11 -1.20 9.42 -39.31 -0.37 -1.57 16 10 C 0.13 1.66 6.78 -82.60 -0.56 1.10 16 11 C 0.11 1.44 6.35 36.01 0.23 1.67 16 12 O -0.38 -5.67 8.52 -35.23 -0.30 -5.97 16 13 C 0.08 1.37 3.40 -24.90 -0.08 1.28 16 14 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 15 C -0.14 -2.52 6.81 -24.58 -0.17 -2.69 16 16 C 0.17 4.09 5.42 -2.53 -0.01 4.08 16 17 N -0.60 -15.35 3.39 -170.08 -0.58 -15.93 16 18 C -0.23 -6.38 10.24 -15.06 -0.15 -6.54 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 20 C -0.01 -0.21 5.40 -17.43 -0.09 -0.31 16 21 N -0.92 -26.74 10.68 55.49 0.59 -26.15 16 22 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.12 2.41 7.02 -3.07 -0.02 2.39 16 27 N -0.43 -5.75 10.03 -6.07 -0.06 -5.81 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 34 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.16 1.70 6.99 -52.49 -0.37 1.34 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 41 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -32.25 372.63 -8.72 -40.98 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.57 Total: -2.69 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.68 Total: 4.30 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.05 Total: -47.89 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.02 Total: -17.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.25 -8.72 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223706803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.379 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds