Wall clock time and date at job start Tue Mar 31 2020 13:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46925 * 2 1 4 4 C 1.34675 * 116.99778 * 179.97438 * 3 2 1 5 5 O 1.21433 * 120.00192 * 0.02562 * 4 3 2 6 6 C 1.48069 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.39350 * 119.72878 * 180.02562 * 6 4 3 8 8 C 1.38589 * 119.05639 * 180.02562 * 7 6 4 9 9 C 1.38626 * 118.49083 * 0.24899 * 8 7 6 10 10 C 1.38581 * 119.35838 * 359.50522 * 9 8 7 11 11 C 1.50703 * 119.55093 * 180.25206 * 10 9 8 12 12 O 1.42895 * 109.46694 * 0.25275 * 11 10 9 13 13 C 1.42903 * 113.99941 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.64139 * 31.68875 * 13 12 11 15 15 C 1.55154 * 110.71987 * 155.02276 * 13 12 11 16 16 C 1.54915 * 101.58095 * 153.86599 * 15 13 12 17 17 N 1.47422 * 104.82929 * 322.98886 * 16 15 13 18 18 C 1.36937 * 125.64623 * 204.08640 * 17 16 15 19 19 H 1.08001 * 119.99678 * 169.98770 * 18 17 16 20 20 C 1.38809 * 120.00137 * 349.99107 * 18 17 16 21 21 N 1.31625 * 119.99988 * 350.41968 * 20 18 17 22 22 Si 1.86805 * 120.00041 * 170.41912 * 20 18 17 23 23 H 1.48498 * 109.47143 * 94.13755 * 22 20 18 24 24 H 1.48503 * 109.47143 * 214.13911 * 22 20 18 25 25 H 1.48501 * 109.46990 * 334.13609 * 22 20 18 26 26 C 1.47025 * 108.70300 * 24.13247 * 17 16 15 27 27 N 1.31513 * 120.90528 * 0.50827 * 10 9 8 28 28 H 1.08997 * 109.47020 * 59.99859 * 1 2 3 29 29 H 1.09006 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46899 * 299.99478 * 1 2 3 31 31 H 1.09003 * 109.46926 * 240.00045 * 2 1 3 32 32 H 1.08997 * 109.47020 * 120.00141 * 2 1 3 33 33 H 1.07993 * 120.47118 * 359.97438 * 7 6 4 34 34 H 1.08003 * 120.75559 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.31999 * 179.74783 * 9 8 7 36 36 H 1.09001 * 109.47125 * 120.25170 * 11 10 9 37 37 H 1.08998 * 109.47130 * 240.25599 * 11 10 9 38 38 H 1.09001 * 111.00656 * 271.94019 * 15 13 12 39 39 H 1.09002 * 111.00868 * 35.79433 * 15 13 12 40 40 H 1.08999 * 110.36899 * 204.14942 * 16 15 13 41 41 H 1.08997 * 110.36697 * 81.83215 * 16 15 13 42 42 H 0.96999 * 119.99610 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.87800 * 239.51724 * 26 17 16 44 44 H 1.08998 * 109.88483 * 118.35935 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0889 0.5824 0.0005 6 6 3.9151 2.9136 0.0011 7 6 5.2974 3.0896 0.0012 8 6 5.8121 4.3764 0.0023 9 6 4.9264 5.4429 0.0086 10 6 3.5632 5.1939 0.0032 11 6 2.5965 6.3501 0.0043 12 8 3.3246 7.5796 0.0053 13 6 2.4975 8.7449 0.0070 14 1 1.5676 8.5553 0.5431 15 6 3.2527 9.9533 0.6208 16 6 2.5400 11.1460 -0.0642 17 7 2.2619 10.6822 -1.4357 18 6 2.0804 11.4868 -2.5288 19 1 2.0422 11.0539 -3.5175 20 6 1.9456 12.8587 -2.3661 21 7 1.8028 13.3676 -1.1606 22 14 1.9670 13.9828 -3.8579 23 1 0.5742 14.2380 -4.3054 24 1 2.6152 15.2698 -3.4988 25 1 2.7286 13.3343 -4.9555 26 6 2.2106 9.2129 -1.4352 27 7 3.1014 3.9625 0.0022 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9582 2.2355 0.0011 34 1 6.8790 4.5445 0.0027 35 1 5.2953 6.4579 0.0138 36 1 1.9692 6.3000 -0.8857 37 1 1.9694 6.2984 0.8943 38 1 3.1208 9.9881 1.7022 39 1 4.3104 9.9272 0.3584 40 1 3.1936 12.0181 -0.0838 41 1 1.6096 11.3799 0.4532 42 1 1.7082 14.3263 -1.0470 43 1 2.9674 8.8154 -2.1114 44 1 1.2210 8.8764 -1.7443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223706803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:59 Heat of formation + Delta-G solvation = -83.362234 kcal Electronic energy + Delta-G solvation = -25852.248724 eV Core-core repulsion = 21963.143662 eV Total energy + Delta-G solvation = -3889.105062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00331 -40.89312 -39.82178 -37.85221 -37.53657 -34.35796 -33.87817 -33.26210 -32.37770 -31.04842 -29.05061 -27.86245 -26.53720 -26.16211 -24.09511 -23.24223 -22.30753 -22.01984 -21.71742 -19.45698 -18.95303 -18.21092 -17.89476 -17.73104 -17.16337 -16.88324 -16.73498 -16.46463 -16.11551 -15.75296 -15.37080 -15.18635 -14.77830 -14.48426 -14.32125 -14.22210 -13.76952 -13.62380 -13.53826 -13.13022 -12.99419 -12.96325 -12.87137 -12.69505 -12.53309 -12.46541 -12.16176 -11.99767 -11.96304 -11.78525 -11.57474 -11.39897 -11.06362 -10.72210 -10.71489 -10.66633 -10.08758 -8.86923 -7.88801 -5.23604 -0.61236 0.07073 1.23499 1.42316 1.47158 1.48365 1.58207 2.18236 2.50515 2.61807 3.15972 3.31645 3.54347 3.71078 3.80767 3.84364 3.86770 3.98895 4.00510 4.04105 4.09401 4.20923 4.29283 4.32959 4.43976 4.45375 4.58236 4.68574 4.76388 4.81543 4.90518 4.93020 5.00000 5.04789 5.07702 5.08535 5.11104 5.32813 5.44953 5.46083 5.60151 5.71873 6.16450 6.22544 6.36682 6.72643 7.08013 7.75051 8.40537 9.23150 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002189 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.313453 B =12788.897055 C =13335.422734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.529 3.471 5 O -0.518 6.518 6 C 0.066 3.934 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.114 4.114 10 C 0.115 3.885 11 C 0.112 3.888 12 O -0.374 6.374 13 C 0.098 3.902 14 H 0.087 0.913 15 C -0.122 4.122 16 C 0.176 3.824 17 N -0.624 5.624 18 C -0.246 4.246 19 H 0.076 0.924 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.110 3.890 27 N -0.454 5.454 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.005 0.995 42 H 0.250 0.750 43 H 0.031 0.969 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -24.981 5.893 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.373 3.627 5 O -0.407 6.407 6 C -0.070 4.070 7 C -0.124 4.124 8 C -0.095 4.095 9 C -0.134 4.134 10 C -0.025 4.025 11 C 0.035 3.965 12 O -0.293 6.293 13 C 0.040 3.960 14 H 0.105 0.895 15 C -0.160 4.160 16 C 0.051 3.949 17 N -0.352 5.352 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.195 1.195 26 C -0.015 4.015 27 N -0.168 5.168 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.184 0.816 34 H 0.203 0.797 35 H 0.179 0.821 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.908 -25.294 5.846 26.253 hybrid contribution 0.265 0.877 -0.838 1.242 sum 4.173 -24.417 5.008 25.272 Atomic orbital electron populations 1.21832 0.90622 1.04467 1.03537 1.23424 0.97073 0.78625 1.03105 1.86694 1.22606 1.34053 1.82765 1.20889 0.81264 0.88491 0.72105 1.90819 1.61038 1.41799 1.47075 1.20047 0.91309 0.89833 1.05780 1.22340 0.93674 1.00310 0.96028 1.22080 1.02770 0.90210 0.94452 1.22531 0.93226 1.02554 0.95091 1.20988 0.93725 0.90871 0.96934 1.20993 0.91740 0.80907 1.02886 1.87786 1.33539 1.12833 1.95093 1.22951 0.94040 0.84470 0.94561 0.89491 1.22944 0.99924 0.92835 1.00296 1.21243 0.95844 0.94242 0.83538 1.44677 1.83741 1.00855 1.05891 1.19373 1.42516 0.88947 0.86662 0.90581 1.25655 1.01918 0.98366 0.99623 1.70133 1.56340 1.11322 1.21706 0.85087 0.77550 0.78072 0.78722 1.21262 1.21712 1.19525 1.21904 0.97902 0.84781 0.96938 1.67058 1.40550 0.98794 1.10351 0.91695 0.87663 0.91547 0.90690 0.90538 0.81568 0.79701 0.82122 0.90791 0.89477 0.88614 0.90837 0.94232 0.97659 0.94109 0.95129 0.95920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 71.98 0.74 -0.91 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.35 -8.00 10.04 -55.84 -0.56 -8.56 16 4 C 0.53 12.85 7.95 70.43 0.56 13.41 16 5 O -0.52 -13.38 16.11 20.05 0.32 -13.06 16 6 C 0.07 1.56 6.75 41.88 0.28 1.84 16 7 C -0.10 -1.83 9.63 22.62 0.22 -1.61 16 8 C -0.07 -1.04 10.17 22.45 0.23 -0.81 16 9 C -0.11 -2.26 9.42 22.44 0.21 -2.05 16 10 C 0.12 2.75 6.78 42.69 0.29 3.04 16 11 C 0.11 2.70 6.35 71.24 0.45 3.16 16 12 O -0.37 -10.45 8.52 -148.98 -1.27 -11.71 16 13 C 0.10 3.18 3.40 31.78 0.11 3.29 16 14 H 0.09 2.55 7.88 -2.39 -0.02 2.53 16 15 C -0.12 -4.27 6.81 31.99 0.22 -4.05 16 16 C 0.18 8.47 5.42 86.86 0.47 8.94 16 17 N -0.62 -32.27 3.39 -692.00 -2.35 -34.62 16 18 C -0.25 -13.93 10.24 84.03 0.86 -13.07 16 19 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 20 C -0.06 -3.53 5.40 84.86 0.46 -3.07 16 21 N -0.95 -56.40 10.68 21.65 0.23 -56.17 16 22 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 C 0.11 4.56 7.02 86.73 0.61 5.17 16 27 N -0.45 -11.68 10.03 -173.11 -1.74 -13.42 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.17 2.33 7.64 -2.91 -0.02 2.31 16 34 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.16 3.07 6.99 -2.91 -0.02 3.05 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 38 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.04 2.14 6.93 -2.39 -0.02 2.12 16 41 H 0.01 0.28 8.07 -2.39 -0.02 0.26 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.84 372.63 3.81 -67.03 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.99 Total: 8.35 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.15 Total: 14.54 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.85 Total: -104.21 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.51 Total: -33.33 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.84 3.81 -67.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223706803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.333 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds