Wall clock time and date at job start Tue Mar 31 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 O 1.42902 * 109.46743 * 305.00160 * 4 2 1 6 6 C 1.35901 * 116.99400 * 179.97438 * 5 4 2 7 7 C 1.38726 * 120.05969 * 359.72365 * 6 5 4 8 8 C 1.38154 * 119.94485 * 179.74257 * 7 6 5 9 9 C 1.38270 * 120.05294 * 0.51156 * 8 7 6 10 10 C 1.38264 * 120.11054 * 359.76792 * 9 8 7 11 11 C 1.38146 * 120.05879 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 13 13 C 1.34777 * 120.00258 * 275.00436 * 12 2 1 14 14 O 1.21346 * 120.00313 * 359.97438 * 13 12 2 15 15 C 1.49456 * 119.99878 * 179.97438 * 13 12 2 16 16 O 1.21346 * 120.00193 * 359.72628 * 15 13 12 17 17 N 1.34777 * 119.99882 * 179.97438 * 15 13 12 18 18 C 1.46496 * 119.99875 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47037 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47303 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99822 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00335 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00296 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47086 * 59.99480 * 24 22 20 26 26 H 1.48503 * 109.47155 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46879 * 299.99424 * 24 22 20 28 28 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 30 30 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 32 32 H 1.08995 * 109.47446 * 184.99963 * 4 2 1 33 33 H 1.07997 * 120.02854 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.97022 * 180.27809 * 8 7 6 35 35 H 1.07991 * 119.94126 * 179.74282 * 9 8 7 36 36 H 1.08000 * 119.96873 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.03024 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99694 * 94.99826 * 12 2 1 39 39 H 0.96999 * 120.00043 * 0.02562 * 17 15 13 40 40 H 1.08992 * 109.47647 * 300.00149 * 18 17 15 41 41 H 1.08996 * 109.46956 * 60.00915 * 18 17 15 42 42 H 1.08996 * 109.47407 * 300.00665 * 19 18 17 43 43 H 1.09000 * 109.46986 * 60.00436 * 19 18 17 44 44 H 0.97005 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 6 1.8226 -2.8086 -2.3662 7 6 2.6943 -2.3203 -3.3286 8 6 3.0552 -3.1154 -4.3992 9 6 2.5400 -4.3931 -4.5175 10 6 1.6665 -4.8800 -3.5627 11 6 1.3067 -4.0908 -2.4875 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8588 1.1594 2.4116 15 6 2.6447 -0.7228 3.5776 16 8 2.9282 -1.9014 3.5245 17 7 2.7738 -0.0503 4.7384 18 6 3.2611 -0.7411 5.9348 19 6 3.3128 0.2421 7.1060 20 6 3.8146 -0.4683 8.3366 21 1 4.0715 -1.5162 8.2881 22 6 3.9458 0.2194 9.5243 23 7 3.6335 1.4955 9.5832 24 14 4.5686 -0.6611 11.0496 25 1 5.9302 -1.1949 10.7917 26 1 4.6186 0.2932 12.1863 27 1 3.6526 -1.7813 11.3831 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -0.1583 -2.1370 32 1 3.1263 -0.7995 -1.2056 33 1 3.0934 -1.3208 -3.2390 34 1 3.7373 -2.7373 -5.1463 35 1 2.8201 -5.0115 -5.3573 36 1 1.2652 -5.8781 -3.6576 37 1 0.6241 -4.4714 -1.7422 38 1 2.2490 -1.6316 1.1527 39 1 2.5434 0.8910 4.7819 40 1 2.5877 -1.5623 6.1798 41 1 4.2600 -1.1342 5.7458 42 1 3.9859 1.0637 6.8613 43 1 2.3137 0.6349 7.2949 44 1 3.7262 1.9795 10.4188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322012321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:08 Heat of formation + Delta-G solvation = -94.838912 kcal Electronic energy + Delta-G solvation = -25414.217447 eV Core-core repulsion = 21524.614719 eV Total energy + Delta-G solvation = -3889.602728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78694 -40.26164 -38.54962 -37.82991 -35.83065 -34.93852 -32.86992 -31.69584 -31.26591 -30.03383 -29.78531 -27.31352 -25.78953 -24.01589 -23.02792 -22.67466 -21.20671 -20.87131 -20.26797 -18.72479 -18.32886 -17.05216 -16.55657 -16.41132 -16.14867 -16.06947 -15.71160 -15.16949 -14.99522 -14.72212 -14.47855 -14.34405 -13.88974 -13.76104 -13.61298 -13.49663 -13.00559 -12.93123 -12.59668 -12.31722 -12.12639 -11.97700 -11.50505 -11.49339 -11.38940 -11.23949 -11.18196 -11.04576 -10.68447 -10.38847 -9.79998 -9.46081 -9.42547 -9.39774 -9.20135 -8.69221 -8.59855 -8.41332 -6.09868 -4.13610 0.94567 1.06156 1.59896 2.46706 2.72494 3.30830 3.34959 3.37740 3.40808 3.42446 3.85262 4.15009 4.40310 4.43860 4.50673 4.52373 4.70226 4.75405 4.76792 4.92051 4.99361 5.06102 5.14898 5.26680 5.26870 5.39856 5.60634 5.62691 5.88991 5.98113 6.02242 6.12449 6.15084 6.18437 6.24174 6.36920 6.59945 6.69630 6.99346 7.04763 7.46647 7.57944 7.66195 7.87235 7.91783 8.21394 8.34395 8.91690 9.51184 11.01507 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.001904 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.061786 B =14699.069931 C =15450.289817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.111 0.889 4 C 0.050 3.950 5 O -0.309 6.309 6 C 0.132 3.868 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.161 4.161 10 C -0.081 4.081 11 C -0.151 4.151 12 N -0.700 5.700 13 C 0.510 3.490 14 O -0.520 6.520 15 C 0.497 3.503 16 O -0.532 6.532 17 N -0.686 5.686 18 C 0.118 3.882 19 C 0.011 3.989 20 C -0.524 4.524 21 H 0.060 0.940 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.417 0.583 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -6.464 -30.065 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.129 0.871 4 C -0.026 4.026 5 O -0.223 6.223 6 C 0.086 3.914 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.179 4.179 10 C -0.099 4.099 11 C -0.170 4.170 12 N -0.355 5.355 13 C 0.291 3.709 14 O -0.396 6.396 15 C 0.276 3.724 16 O -0.410 6.410 17 N -0.337 5.337 18 C -0.003 4.003 19 C -0.026 4.026 20 C -0.563 4.563 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.253 0.747 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.785 -6.323 -29.739 30.778 hybrid contribution 0.508 -0.213 0.719 0.906 sum -4.277 -6.536 -29.020 30.053 Atomic orbital electron populations 1.22131 0.93851 1.03371 1.02864 1.21151 0.95792 0.96851 0.82002 0.87120 1.23183 0.98545 0.82217 0.98623 1.86089 1.67125 1.26078 1.42988 1.19016 0.94233 0.91136 0.86966 1.21285 1.02828 1.01631 0.97126 1.20968 0.98205 0.93898 0.96849 1.21086 1.00008 0.96452 1.00344 1.21001 0.96449 0.99306 0.93138 1.20505 1.03731 0.92194 1.00526 1.45807 1.65875 1.15265 1.08579 1.20489 0.78535 0.86982 0.84852 1.90751 1.48544 1.15423 1.84839 1.19958 0.80516 0.87199 0.84736 1.90739 1.49957 1.15219 1.85045 1.46230 1.63039 1.15068 1.09359 1.21935 0.98465 0.96923 0.82984 1.19353 0.98231 0.94245 0.90812 1.20974 1.44732 0.96623 0.93943 0.92217 1.25002 0.95277 0.94893 0.99100 1.69951 1.47988 1.08142 1.26972 0.86551 0.79476 0.79331 0.82033 1.20113 1.21232 1.20103 0.91487 0.91398 0.91216 0.90072 0.90878 0.85476 0.85834 0.85957 0.85346 0.85054 0.74654 0.75397 0.91855 0.91868 0.95665 0.95650 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.29 37.16 0.35 -1.09 16 2 C 0.15 1.29 2.98 -67.93 -0.20 1.09 16 3 H 0.11 0.97 7.58 -51.93 -0.39 0.58 16 4 C 0.05 0.35 4.48 37.16 0.17 0.52 16 5 O -0.31 -2.75 8.99 -19.43 -0.17 -2.92 16 6 C 0.13 1.16 6.69 -39.22 -0.26 0.90 16 7 C -0.21 -1.59 9.04 -39.43 -0.36 -1.94 16 8 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 9 C -0.16 -1.08 10.04 -39.56 -0.40 -1.47 16 10 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 11 C -0.15 -1.26 9.99 -39.43 -0.39 -1.65 16 12 N -0.70 -8.08 5.05 -54.24 -0.27 -8.35 16 13 C 0.51 7.51 7.85 -11.58 -0.09 7.42 16 14 O -0.52 -8.45 16.14 5.50 0.09 -8.36 16 15 C 0.50 8.58 7.89 -11.58 -0.09 8.49 16 16 O -0.53 -10.20 16.48 5.50 0.09 -10.11 16 17 N -0.69 -12.53 5.55 -60.73 -0.34 -12.86 16 18 C 0.12 2.49 5.61 -4.04 -0.02 2.46 16 19 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 20 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 24 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 31 H 0.08 0.41 7.65 -51.93 -0.40 0.01 16 32 H 0.07 0.47 7.68 -51.93 -0.40 0.08 16 33 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 34 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.42 4.75 7.85 -40.82 -0.32 4.43 16 39 H 0.41 7.11 7.94 -40.82 -0.32 6.79 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -32.02 379.64 -8.15 -40.17 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.33 Total: 6.02 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.65 Total: -0.23 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.13 Total: -46.57 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.00 Total: -21.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.02 -8.15 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322012321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.666 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds