Wall clock time and date at job start Tue Mar 31 2020 12:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47189 * 2 1 4 4 C 1.46495 * 119.99964 * 274.84359 * 3 2 1 5 5 C 1.53008 * 109.47127 * 264.11858 * 4 3 2 6 6 C 1.34776 * 119.99675 * 94.84106 * 3 2 1 7 7 O 1.21348 * 120.00203 * 354.64544 * 6 3 2 8 8 C 1.49447 * 119.99810 * 174.64691 * 6 3 2 9 9 O 1.21345 * 120.00232 * 0.76923 * 8 6 3 10 10 N 1.34781 * 119.99923 * 180.76200 * 8 6 3 11 11 C 1.46495 * 119.99850 * 179.97438 * 10 8 6 12 12 C 1.50708 * 109.47041 * 180.02562 * 11 10 8 13 13 C 1.38323 * 119.96250 * 269.97830 * 12 11 10 14 14 C 1.38279 * 120.13552 * 180.02562 * 13 12 11 15 15 C 1.38124 * 120.06878 * 359.67679 * 14 13 12 16 16 C 1.38858 * 119.92754 * 0.60189 * 15 14 13 17 17 O 1.35755 * 120.06764 * 179.70217 * 16 15 14 18 18 C 1.34831 * 116.99951 * 354.19361 * 17 16 15 19 19 H 1.08005 * 119.99820 * 5.05139 * 18 17 16 20 20 C 1.38652 * 120.00300 * 185.04845 * 18 17 16 21 21 N 1.31566 * 119.99640 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00351 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47189 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47111 * 120.00179 * 22 20 18 25 25 H 1.48502 * 109.47596 * 240.00336 * 22 20 18 26 26 C 1.38079 * 119.96276 * 90.00419 * 12 11 10 27 27 H 1.09002 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46692 * 299.99340 * 1 2 3 29 29 H 1.08996 * 109.46843 * 59.99698 * 1 2 3 30 30 H 1.09008 * 109.47218 * 240.00495 * 2 1 3 31 31 H 1.09000 * 109.47473 * 120.00658 * 2 1 3 32 32 H 1.08994 * 109.47598 * 24.11621 * 4 3 2 33 33 H 1.09000 * 109.47202 * 144.12649 * 4 3 2 34 34 H 1.08997 * 109.47081 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46926 * 300.00503 * 5 4 3 36 36 H 1.09002 * 109.46787 * 59.99924 * 5 4 3 37 37 H 0.97002 * 119.99903 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47518 * 60.00465 * 11 10 8 39 39 H 1.08998 * 109.47508 * 300.00243 * 11 10 8 40 40 H 1.07995 * 119.93310 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.96512 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03794 * 180.31762 * 15 14 13 43 43 H 0.96999 * 119.99453 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03802 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.6080 2.0024 -1.7518 6 6 2.3359 1.9837 1.1631 7 8 2.1262 1.4184 2.2162 8 6 2.9461 3.3479 1.1557 9 8 3.1428 3.9189 0.1033 10 7 3.2777 3.9440 2.3181 11 6 3.8764 5.2810 2.3109 12 6 4.1508 5.7163 3.7274 13 6 3.1845 6.4055 4.4378 14 6 3.4326 6.8070 5.7375 15 6 4.6443 6.5149 6.3327 16 6 5.6185 5.8282 5.6202 17 8 6.8127 5.5449 6.2004 18 6 7.0356 6.0612 7.4258 19 1 6.2510 6.6006 7.9355 20 6 8.2723 5.8996 8.0317 21 7 9.2282 5.2428 7.4106 22 14 8.5810 6.6143 9.7297 23 1 7.3542 7.3009 10.2083 24 1 8.9346 5.5208 10.6702 25 1 9.6993 7.5889 9.6608 26 6 5.3666 5.4270 4.3145 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.4945 1.6745 -2.0096 33 1 1.9049 3.1559 -1.1120 34 1 3.7146 2.5431 -2.6921 35 1 4.2751 2.4353 -1.0063 36 1 3.8648 0.9540 -1.9039 37 1 3.1207 3.4874 3.1595 38 1 3.1890 5.9845 1.8411 39 1 4.8112 5.2576 1.7509 40 1 2.2344 6.6306 3.9764 41 1 2.6765 7.3454 6.2895 42 1 4.8357 6.8242 7.3496 43 1 10.0935 5.1301 7.8344 44 1 6.1206 4.8888 3.7593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322766834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:37 Heat of formation + Delta-G solvation = -64.497073 kcal Electronic energy + Delta-G solvation = -26166.697251 eV Core-core repulsion = 22278.410244 eV Total energy + Delta-G solvation = -3888.287007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96566 -39.27268 -38.57521 -37.02265 -36.58024 -34.55498 -32.34896 -32.29148 -30.90885 -29.83264 -29.18687 -26.70612 -25.40409 -24.57195 -23.83938 -22.05503 -21.70624 -20.86408 -19.84126 -18.14893 -17.55747 -17.21110 -16.92654 -16.24258 -15.89422 -15.39181 -15.23214 -14.85174 -14.64489 -14.38146 -14.19108 -14.01017 -13.75569 -13.62135 -13.46612 -12.99292 -12.87583 -12.72715 -12.46979 -12.35482 -12.25588 -12.07972 -11.70986 -11.49704 -11.38160 -11.28088 -11.13123 -10.95407 -10.85393 -10.72149 -10.46991 -9.50426 -9.42271 -9.22048 -9.00767 -8.90472 -8.27629 -7.34927 -6.50190 -4.09600 1.35643 1.77482 2.23357 2.38602 3.09229 3.10918 3.13219 3.16553 3.43335 3.91806 4.27823 4.52468 4.68489 4.78098 4.85562 4.86886 5.04760 5.06930 5.16997 5.20411 5.29799 5.34781 5.48521 5.53846 5.61340 5.66514 5.73596 5.78885 5.83959 5.86468 6.02212 6.05593 6.22448 6.23122 6.30815 6.52038 6.78761 6.82681 6.97463 7.14045 7.21075 7.26497 7.34071 7.64150 7.68527 7.93935 7.95099 8.95250 9.63504 10.67625 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.002351 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.085294 B =11906.908767 C =12140.548246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.587 5.587 4 C 0.100 3.900 5 C -0.161 4.161 6 C 0.506 3.494 7 O -0.518 6.518 8 C 0.502 3.498 9 O -0.518 6.518 10 N -0.687 5.687 11 C 0.167 3.833 12 C -0.077 4.077 13 C -0.193 4.193 14 C -0.076 4.076 15 C -0.223 4.223 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.168 4.168 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.415 0.585 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 -5.835 -15.022 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.322 5.322 4 C -0.022 4.022 5 C -0.219 4.219 6 C 0.289 3.711 7 O -0.393 6.393 8 C 0.283 3.717 9 O -0.396 6.396 10 N -0.339 5.339 11 C 0.045 3.955 12 C -0.078 4.078 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.243 4.243 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.188 4.188 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.439 -5.929 -15.237 21.814 hybrid contribution 0.111 0.168 1.274 1.290 sum -14.328 -5.761 -13.963 20.820 Atomic orbital electron populations 1.22128 0.95471 1.02427 1.02528 1.21565 0.94721 0.81585 1.03621 1.47922 1.63295 1.14219 1.06724 1.21977 0.97637 0.98854 0.83695 1.22113 0.96786 1.01007 1.02028 1.20273 0.79591 0.87056 0.84228 1.90774 1.52530 1.65565 1.30461 1.20027 0.80267 0.86718 0.84704 1.90693 1.53267 1.65573 1.30036 1.46016 1.60392 1.18567 1.08966 1.20299 0.98694 0.81995 0.94505 1.19201 0.94281 1.00213 0.94100 1.20474 0.99025 1.06075 0.95682 1.20746 0.96056 0.98025 0.94576 1.21261 0.94774 1.06571 1.01697 1.19313 0.86970 0.92426 0.91662 1.83984 1.28615 1.63557 1.31749 1.21378 0.99199 1.35416 0.90888 0.88955 1.25308 0.94367 0.96835 1.00003 1.70051 1.03756 1.37886 1.37819 0.85634 0.78920 0.78667 0.80125 1.19075 1.20101 1.20093 1.20083 0.97764 1.07213 0.93778 0.91341 0.92054 0.92447 0.90203 0.89393 0.90990 0.87637 0.91541 0.91502 0.93378 0.74813 0.90296 0.90218 0.87437 0.87198 0.85390 0.91983 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.11 0.88 6.12 -4.04 -0.02 0.85 16 3 N -0.59 -6.03 2.49 -174.19 -0.43 -6.46 16 4 C 0.10 0.88 5.72 -4.04 -0.02 0.85 16 5 C -0.16 -1.45 9.64 37.16 0.36 -1.09 16 6 C 0.51 6.60 7.68 -11.59 -0.09 6.52 16 7 O -0.52 -7.95 16.04 5.50 0.09 -7.86 16 8 C 0.50 6.74 7.56 -11.58 -0.09 6.65 16 9 O -0.52 -7.16 11.44 5.50 0.06 -7.10 16 10 N -0.69 -9.39 5.54 -61.91 -0.34 -9.73 16 11 C 0.17 2.33 5.80 -5.19 -0.03 2.30 16 12 C -0.08 -1.29 5.25 -104.65 -0.55 -1.84 16 13 C -0.19 -3.13 9.70 -39.54 -0.38 -3.51 16 14 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 15 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 16 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 17 O -0.18 -4.91 9.76 0.03 0.00 -4.91 16 18 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 19 H 0.09 2.34 5.21 -52.48 -0.27 2.06 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 22 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.17 -3.39 9.65 -39.40 -0.38 -3.77 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.48 8.11 -51.92 -0.42 0.06 16 31 H 0.09 0.83 7.36 -51.93 -0.38 0.45 16 32 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 33 H 0.11 1.07 5.79 -51.93 -0.30 0.77 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.42 5.81 7.94 -40.82 -0.32 5.49 16 38 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 39 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -31.07 371.85 -7.04 -38.12 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.10 Total: 8.18 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.65 Total: -6.85 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.02 Total: -40.40 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.15 Total: -19.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.07 -7.04 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322766834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.382 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds