Wall clock time and date at job start Tue Mar 31 2020 12:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47378 * 2 1 4 4 C 1.35908 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.38746 * 120.05602 * 359.97438 * 4 3 2 6 6 C 1.38126 * 119.94576 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.26200 * 6 5 4 8 8 C 1.38243 * 120.10724 * 359.48327 * 7 6 5 9 9 C 1.50701 * 119.96851 * 180.25848 * 8 7 6 10 10 N 1.46496 * 109.47301 * 270.25533 * 9 8 7 11 11 C 1.34779 * 120.00184 * 179.97438 * 10 9 8 12 12 O 1.21348 * 119.99703 * 0.02562 * 11 10 9 13 13 C 1.49455 * 120.00032 * 179.97438 * 11 10 9 14 14 O 1.21346 * 119.99645 * 0.02562 * 13 11 10 15 15 N 1.34778 * 119.99613 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99310 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46635 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00304 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99496 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47219 * 59.99855 * 22 20 18 24 24 H 1.48503 * 109.46886 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47231 * 299.99491 * 22 20 18 26 26 C 1.38166 * 120.05887 * 0.51419 * 8 7 6 27 27 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47089 * 300.00606 * 1 2 3 29 29 H 1.09000 * 109.47040 * 60.00307 * 1 2 3 30 30 H 1.08998 * 109.47238 * 239.99111 * 2 1 3 31 31 H 1.09009 * 109.46444 * 119.99721 * 2 1 3 32 32 H 1.07999 * 120.02769 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.97098 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.94284 * 179.74698 * 7 6 5 35 35 H 1.08999 * 109.47316 * 30.25699 * 9 8 7 36 36 H 1.09008 * 109.47157 * 150.25356 * 9 8 7 37 37 H 0.97003 * 120.00243 * 359.97438 * 10 9 8 38 38 H 0.96996 * 120.00371 * 359.97438 * 15 13 11 39 39 H 1.08992 * 109.47758 * 300.00096 * 16 15 13 40 40 H 1.09005 * 109.46934 * 60.00842 * 16 15 13 41 41 H 1.08994 * 109.47691 * 299.99935 * 17 16 15 42 42 H 1.09004 * 109.47157 * 60.00686 * 17 16 15 43 43 H 0.96994 * 119.99724 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.02853 * 179.76883 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1999 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0016 7 6 6.0963 1.8875 0.0028 8 6 5.2553 2.9847 -0.0026 9 6 5.8334 4.3764 -0.0037 10 7 6.0217 4.8281 1.3771 11 6 6.5307 6.0517 1.6225 12 8 6.8325 6.7794 0.6995 13 6 6.7222 6.5127 3.0312 14 8 6.4199 5.7851 3.9540 15 7 7.2317 7.7362 3.2764 16 6 7.4200 8.1878 4.6573 17 6 8.0087 9.5999 4.6561 18 6 8.2030 10.0643 6.0765 19 1 7.9331 9.4172 6.8979 20 6 8.7243 11.3159 6.3276 21 7 9.0524 12.1042 5.3272 22 14 8.9657 11.8912 8.0882 23 1 9.8957 10.9684 8.7874 24 1 9.5370 13.2619 8.0871 25 1 7.6570 11.9005 8.7898 26 6 3.8851 2.8064 -0.0015 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 3.7885 -0.5729 -0.0005 33 1 6.2280 -0.2465 -0.0012 34 1 7.1669 2.0289 0.0060 35 1 6.7943 4.3703 -0.5182 36 1 5.1505 5.0531 -0.5174 37 1 5.7800 4.2465 2.1150 38 1 7.4744 8.3173 2.5387 39 1 6.4590 8.1948 5.1715 40 1 8.1022 7.5106 5.1712 41 1 8.9698 9.5926 4.1420 42 1 7.3268 10.2774 4.1421 43 1 9.4188 12.9848 5.5038 44 1 3.2285 3.6639 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327474769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:56 Heat of formation + Delta-G solvation = -97.725000 kcal Electronic energy + Delta-G solvation = -24951.473467 eV Core-core repulsion = 21061.745589 eV Total energy + Delta-G solvation = -3889.727878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73431 -40.27450 -38.53886 -37.93984 -35.48768 -34.70096 -32.84705 -32.47883 -31.67916 -29.96401 -29.79430 -27.23338 -25.34988 -24.11977 -23.11180 -22.93011 -21.25603 -21.01539 -20.19686 -18.77094 -17.86030 -16.83140 -16.56483 -16.54780 -16.45655 -16.25504 -15.74365 -15.34699 -14.92221 -14.66856 -14.44926 -14.24948 -13.89188 -13.82212 -13.51969 -13.33151 -13.18081 -13.01819 -12.55779 -12.41948 -12.30587 -12.12634 -11.94180 -11.51290 -11.24165 -11.21712 -11.19665 -11.03655 -10.67558 -10.37606 -9.81084 -9.53329 -9.37476 -9.35161 -9.12827 -8.67770 -8.61027 -8.40184 -6.08835 -4.12542 0.75774 1.03851 1.63045 2.57617 2.73583 3.31568 3.34964 3.35923 3.39084 3.44866 3.99277 4.20442 4.33444 4.41264 4.41612 4.55196 4.60109 4.73143 4.77587 4.80472 4.89236 5.04764 5.12914 5.27894 5.28625 5.29921 5.39910 5.54911 5.60888 5.86231 5.99790 6.07615 6.15432 6.19806 6.25498 6.30775 6.61379 6.71022 6.98960 7.06507 7.48009 7.59346 7.67837 7.88363 7.93913 8.22730 8.35916 8.92775 9.52178 11.02576 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.001772 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.806751 B =15796.551761 C =16283.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.128 3.872 5 C -0.201 4.201 6 C -0.081 4.081 7 C -0.136 4.136 8 C -0.070 4.070 9 C 0.160 3.840 10 N -0.702 5.702 11 C 0.508 3.492 12 O -0.520 6.520 13 C 0.498 3.502 14 O -0.533 6.533 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.131 4.131 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -26.615 -14.885 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.083 3.917 5 C -0.220 4.220 6 C -0.099 4.099 7 C -0.155 4.155 8 C -0.070 4.070 9 C 0.037 3.963 10 N -0.356 5.356 11 C 0.289 3.711 12 O -0.395 6.395 13 C 0.277 3.723 14 O -0.411 6.411 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.251 0.749 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.505 -26.248 -14.923 32.680 hybrid contribution 0.232 0.060 0.879 0.911 sum -12.272 -26.187 -14.044 32.150 Atomic orbital electron populations 1.21784 0.92578 1.02941 1.03725 1.22801 0.96052 0.81833 1.01390 1.86093 1.18866 1.29437 1.88549 1.18934 0.82435 0.93966 0.96383 1.21310 0.94491 0.98095 1.08137 1.20955 0.94316 0.97305 0.97330 1.21049 1.00069 0.91872 1.02462 1.19608 0.92580 0.94824 1.00011 1.20284 1.01696 0.91044 0.83268 1.45794 1.63990 1.16759 1.09090 1.20480 0.78187 0.82127 0.90258 1.90762 1.48829 1.54102 1.45776 1.19947 0.80144 0.83552 0.88650 1.90733 1.50465 1.54514 1.45373 1.46230 1.60390 1.15181 1.11883 1.21936 1.00910 0.98886 0.78568 1.19356 0.96546 0.88393 0.98378 1.20979 1.42972 1.00700 0.91642 0.92220 1.25002 0.95222 0.96604 0.97428 1.69951 1.42925 1.09318 1.30846 0.86551 0.78568 0.77730 0.84537 1.20120 1.21234 1.20120 1.20370 0.94517 0.95236 1.04882 0.90299 0.91353 0.91441 0.92025 0.91944 0.85430 0.85432 0.85379 0.89712 0.89833 0.74928 0.75369 0.91856 0.91865 0.95639 0.95638 0.92730 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.30 5.46 37.16 0.20 0.51 16 3 O -0.32 -2.81 10.14 -19.45 -0.20 -3.01 16 4 C 0.13 1.15 6.69 -39.22 -0.26 0.89 16 5 C -0.20 -1.50 9.04 -39.43 -0.36 -1.86 16 6 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 7 C -0.14 -1.06 9.70 -39.56 -0.38 -1.45 16 8 C -0.07 -0.61 5.25 -104.65 -0.55 -1.15 16 9 C 0.16 1.53 5.80 -5.20 -0.03 1.50 16 10 N -0.70 -8.24 5.54 -61.91 -0.34 -8.59 16 11 C 0.51 7.63 7.89 -11.58 -0.09 7.54 16 12 O -0.52 -8.73 16.48 5.50 0.09 -8.64 16 13 C 0.50 8.65 7.89 -11.58 -0.09 8.56 16 14 O -0.53 -10.22 16.48 5.50 0.09 -10.13 16 15 N -0.69 -12.60 5.55 -60.73 -0.34 -12.94 16 16 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 17 C 0.01 0.27 5.09 -27.88 -0.14 0.12 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.13 -1.20 9.64 -39.43 -0.38 -1.58 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.06 0.30 7.66 -51.92 -0.40 -0.10 16 32 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.79 8.09 -51.92 -0.42 0.37 16 37 H 0.41 4.65 7.94 -40.82 -0.32 4.33 16 38 H 0.41 7.18 7.94 -40.82 -0.32 6.86 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.34 382.16 -8.14 -40.48 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.38 Total: 5.06 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.53 Total: 1.10 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.06 Total: -46.93 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.02 Total: -21.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.34 -8.14 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327474769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.244 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds