Wall clock time and date at job start Tue Mar 31 2020 12:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47378 * 2 1 4 4 C 1.35908 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.38746 * 120.05602 * 359.97438 * 4 3 2 6 6 C 1.38126 * 119.94576 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.26200 * 6 5 4 8 8 C 1.38243 * 120.10724 * 359.48327 * 7 6 5 9 9 C 1.50701 * 119.96851 * 180.25848 * 8 7 6 10 10 N 1.46496 * 109.47301 * 270.25533 * 9 8 7 11 11 C 1.34779 * 120.00184 * 179.97438 * 10 9 8 12 12 O 1.21348 * 119.99703 * 0.02562 * 11 10 9 13 13 C 1.49455 * 120.00032 * 179.97438 * 11 10 9 14 14 O 1.21346 * 119.99645 * 0.02562 * 13 11 10 15 15 N 1.34778 * 119.99613 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99310 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46635 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00304 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99496 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47219 * 59.99855 * 22 20 18 24 24 H 1.48503 * 109.46886 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47231 * 299.99491 * 22 20 18 26 26 C 1.38166 * 120.05887 * 0.51419 * 8 7 6 27 27 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47089 * 300.00606 * 1 2 3 29 29 H 1.09000 * 109.47040 * 60.00307 * 1 2 3 30 30 H 1.08998 * 109.47238 * 239.99111 * 2 1 3 31 31 H 1.09009 * 109.46444 * 119.99721 * 2 1 3 32 32 H 1.07999 * 120.02769 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.97098 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.94284 * 179.74698 * 7 6 5 35 35 H 1.08999 * 109.47316 * 30.25699 * 9 8 7 36 36 H 1.09008 * 109.47157 * 150.25356 * 9 8 7 37 37 H 0.97003 * 120.00243 * 359.97438 * 10 9 8 38 38 H 0.96996 * 120.00371 * 359.97438 * 15 13 11 39 39 H 1.08992 * 109.47758 * 300.00096 * 16 15 13 40 40 H 1.09005 * 109.46934 * 60.00842 * 16 15 13 41 41 H 1.08994 * 109.47691 * 299.99935 * 17 16 15 42 42 H 1.09004 * 109.47157 * 60.00686 * 17 16 15 43 43 H 0.96994 * 119.99724 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.02853 * 179.76883 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1999 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0016 7 6 6.0963 1.8875 0.0028 8 6 5.2553 2.9847 -0.0026 9 6 5.8334 4.3764 -0.0037 10 7 6.0217 4.8281 1.3771 11 6 6.5307 6.0517 1.6225 12 8 6.8325 6.7794 0.6995 13 6 6.7222 6.5127 3.0312 14 8 6.4199 5.7851 3.9540 15 7 7.2317 7.7362 3.2764 16 6 7.4200 8.1878 4.6573 17 6 8.0087 9.5999 4.6561 18 6 8.2030 10.0643 6.0765 19 1 7.9331 9.4172 6.8979 20 6 8.7243 11.3159 6.3276 21 7 9.0524 12.1042 5.3272 22 14 8.9657 11.8912 8.0882 23 1 9.8957 10.9684 8.7874 24 1 9.5370 13.2619 8.0871 25 1 7.6570 11.9005 8.7898 26 6 3.8851 2.8064 -0.0015 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 3.7885 -0.5729 -0.0005 33 1 6.2280 -0.2465 -0.0012 34 1 7.1669 2.0289 0.0060 35 1 6.7943 4.3703 -0.5182 36 1 5.1505 5.0531 -0.5174 37 1 5.7800 4.2465 2.1150 38 1 7.4744 8.3173 2.5387 39 1 6.4590 8.1948 5.1715 40 1 8.1022 7.5106 5.1712 41 1 8.9698 9.5926 4.1420 42 1 7.3268 10.2774 4.1421 43 1 9.4188 12.9848 5.5038 44 1 3.2285 3.6639 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327474769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:55 Heat of formation + Delta-G solvation = -119.815919 kcal Electronic energy + Delta-G solvation = -24952.431401 eV Core-core repulsion = 21061.745589 eV Total energy + Delta-G solvation = -3890.685812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76303 -41.14044 -39.71676 -38.75090 -36.92987 -35.94960 -34.80031 -32.91473 -32.43738 -31.68621 -30.52592 -28.24533 -26.97910 -25.00905 -24.18830 -23.55181 -22.80449 -21.87857 -21.48043 -19.86576 -18.71672 -18.57130 -17.85514 -17.31645 -17.07425 -17.05327 -16.86857 -16.60132 -16.49451 -16.10117 -15.85261 -15.20749 -14.88133 -14.67029 -14.42444 -14.33514 -14.28847 -14.03929 -13.61171 -13.35576 -13.26210 -12.99030 -12.92307 -12.80831 -12.61145 -12.54097 -12.52076 -12.26663 -11.76103 -11.68433 -11.65832 -11.45278 -10.77667 -10.60296 -10.39884 -10.19814 -9.95973 -9.21273 -8.22568 -6.33886 0.11615 0.31167 0.43629 1.37526 1.44652 1.46103 1.54382 2.11251 2.22094 2.40418 2.59235 2.89470 3.12245 3.44408 3.54271 3.81881 4.04384 4.05166 4.09929 4.21143 4.31127 4.36552 4.39270 4.44981 4.45600 4.58899 4.67716 4.81630 4.85540 4.93067 5.00897 5.04904 5.08122 5.18885 5.30330 5.42419 5.42833 5.53545 5.55541 5.73886 5.76209 5.91521 6.13542 6.34129 6.43991 6.68365 6.79762 6.91885 7.35503 8.89150 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.001772 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.806751 B =15796.551761 C =16283.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.113 3.887 5 C -0.200 4.200 6 C -0.081 4.081 7 C -0.140 4.140 8 C -0.074 4.074 9 C 0.161 3.839 10 N -0.684 5.684 11 C 0.516 3.484 12 O -0.539 6.539 13 C 0.500 3.500 14 O -0.550 6.550 15 N -0.688 5.688 16 C 0.138 3.862 17 C 0.018 3.982 18 C -0.547 4.547 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.147 4.147 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.418 0.582 38 H 0.415 0.585 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -28.673 -14.636 34.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.068 3.932 5 C -0.219 4.219 6 C -0.099 4.099 7 C -0.159 4.159 8 C -0.075 4.075 9 C 0.039 3.961 10 N -0.337 5.337 11 C 0.297 3.703 12 O -0.416 6.416 13 C 0.281 3.719 14 O -0.428 6.428 15 N -0.339 5.339 16 C 0.015 3.985 17 C -0.020 4.020 18 C -0.585 4.585 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.192 1.192 26 C -0.166 4.166 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.256 0.744 38 H 0.251 0.749 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.651 -28.355 -14.689 34.348 hybrid contribution 0.212 0.585 0.741 0.968 sum -12.439 -27.769 -13.948 33.473 Atomic orbital electron populations 1.21819 0.91882 1.04158 1.03033 1.23060 0.96682 0.80678 1.02419 1.86072 1.18961 1.31460 1.88655 1.19113 0.82849 0.94350 0.96913 1.21597 0.94614 0.98650 1.07032 1.21288 0.94557 0.97835 0.96196 1.21276 1.00661 0.91974 1.01978 1.19489 0.92480 0.94481 1.01047 1.20413 1.02276 0.91723 0.81681 1.45791 1.62049 1.15398 1.10443 1.19931 0.78803 0.82992 0.88614 1.90764 1.50274 1.54894 1.45690 1.20323 0.79073 0.82741 0.89755 1.90721 1.50972 1.54830 1.46309 1.46067 1.61009 1.15946 1.10898 1.21484 1.00341 0.96592 0.80093 1.19182 0.95437 0.90306 0.97036 1.21427 1.42946 1.01195 0.92925 0.91708 1.25918 0.94807 0.96753 1.01876 1.70072 1.43725 1.09730 1.33134 0.85454 0.78846 0.77293 0.79174 1.19192 1.20836 1.19247 1.20448 0.94826 0.95564 1.05788 0.88113 0.92213 0.91951 0.90734 0.91041 0.83337 0.82876 0.84140 0.88833 0.89758 0.74442 0.74865 0.92063 0.91968 0.97317 0.97390 0.92586 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.05 0.45 5.46 71.98 0.39 0.84 16 3 O -0.34 -5.84 10.14 -92.51 -0.94 -6.78 16 4 C 0.11 1.94 6.69 22.50 0.15 2.09 16 5 C -0.20 -2.57 9.04 22.36 0.20 -2.37 16 6 C -0.08 -0.94 10.04 22.26 0.22 -0.72 16 7 C -0.14 -1.92 9.70 22.28 0.22 -1.70 16 8 C -0.07 -1.22 5.25 -19.88 -0.10 -1.32 16 9 C 0.16 2.91 5.80 85.63 0.50 3.41 16 10 N -0.68 -15.39 5.54 -468.13 -2.59 -17.99 16 11 C 0.52 15.16 7.89 87.27 0.69 15.85 16 12 O -0.54 -17.83 16.48 -3.24 -0.05 -17.88 16 13 C 0.50 17.20 7.89 87.27 0.69 17.89 16 14 O -0.55 -20.73 16.48 -3.23 -0.05 -20.78 16 15 N -0.69 -25.36 5.55 -464.41 -2.58 -27.94 16 16 C 0.14 5.82 5.61 86.38 0.48 6.31 16 17 C 0.02 0.91 5.09 29.85 0.15 1.06 16 18 C -0.55 -30.31 9.11 25.60 0.23 -30.08 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.01 0.30 5.46 84.66 0.46 0.76 16 21 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 22 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C -0.15 -2.65 9.64 22.36 0.22 -2.44 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 31 H 0.07 0.55 7.66 -2.38 -0.02 0.54 16 32 H 0.15 1.19 6.30 -2.91 -0.02 1.17 16 33 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.08 1.55 8.09 -2.38 -0.02 1.53 16 37 H 0.42 8.95 7.94 -92.71 -0.74 8.21 16 38 H 0.41 14.69 7.94 -92.71 -0.74 13.95 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -68.61 382.16 0.89 -67.72 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.44 Total: 23.60 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.24 Total: 9.17 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -4.89 Total: -100.56 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.04 Total: -45.44 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.61 0.89 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327474769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.095 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds