Wall clock time and date at job start Tue Mar 31 2020 12:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.46492 * 119.99901 * 94.12706 * 3 2 1 5 5 C 1.50700 * 109.47457 * 89.99638 * 4 3 2 6 6 C 1.41389 * 126.57690 * 89.99708 * 5 4 3 7 7 C 1.34505 * 106.83873 * 180.02562 * 6 5 4 8 8 O 1.34306 * 108.42548 * 0.02562 * 7 6 5 9 9 C 1.34299 * 109.47102 * 0.02562 * 8 7 6 10 10 C 1.34774 * 119.99806 * 274.12732 * 3 2 1 11 11 O 1.21356 * 119.99652 * 185.18556 * 10 3 2 12 12 C 1.49443 * 120.00232 * 5.18168 * 10 3 2 13 13 O 1.21350 * 120.00284 * 5.57219 * 12 10 3 14 14 N 1.34782 * 120.00291 * 185.56897 * 12 10 3 15 15 C 1.46490 * 120.00278 * 175.79676 * 14 12 10 16 16 C 1.53002 * 109.47299 * 185.05843 * 15 14 12 17 17 C 1.50697 * 115.54888 * 65.28680 * 16 15 14 18 18 H 1.07997 * 120.00030 * 268.22953 * 17 16 15 19 19 C 1.37879 * 120.00382 * 88.22610 * 17 16 15 20 20 N 1.31516 * 119.99735 * 3.01309 * 19 17 16 21 21 Si 1.86796 * 120.00283 * 183.01289 * 19 17 16 22 22 H 1.48497 * 109.47458 * 59.99642 * 21 19 17 23 23 H 1.48502 * 109.47239 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47041 * 299.99706 * 21 19 17 25 25 C 1.52995 * 117.50109 * 279.61754 * 16 15 14 26 26 C 1.52999 * 117.50084 * 210.95702 * 16 15 14 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47363 * 299.99915 * 1 2 3 29 29 H 1.09000 * 109.47169 * 60.00097 * 1 2 3 30 30 H 1.09003 * 109.47309 * 239.99890 * 2 1 3 31 31 H 1.09000 * 109.47169 * 119.99903 * 2 1 3 32 32 H 1.09006 * 109.47484 * 329.99960 * 4 3 2 33 33 H 1.08997 * 109.47227 * 209.99969 * 4 3 2 34 34 H 1.08001 * 126.57704 * 359.77816 * 6 5 4 35 35 H 1.08006 * 125.78788 * 180.02562 * 7 6 5 36 36 H 1.08010 * 125.78504 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99287 * 355.79487 * 14 12 10 38 38 H 1.09002 * 109.47357 * 305.05956 * 15 14 12 39 39 H 1.09003 * 109.47051 * 65.05711 * 15 14 12 40 40 H 0.96995 * 119.99972 * 185.01109 * 20 19 17 41 41 H 1.09012 * 117.49610 * 359.97438 * 25 16 15 42 42 H 1.08996 * 117.50289 * 145.01355 * 25 16 15 43 43 H 1.09006 * 117.49952 * 214.98101 * 26 16 15 44 44 H 1.09005 * 117.49770 * 359.97153 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3485 2.0414 1.2654 5 6 3.7978 1.7954 1.5972 6 6 4.8974 2.5985 1.2164 7 6 5.9993 2.0151 1.7212 8 8 5.6276 0.9073 2.3833 9 6 4.2938 0.7686 2.3106 10 6 2.1637 2.0446 -1.1642 11 8 2.6562 3.1537 -1.1731 12 6 1.7186 1.4143 -2.4440 13 8 1.1351 0.3504 -2.4257 14 7 1.9652 2.0274 -3.6187 15 6 1.6117 1.3674 -4.8778 16 6 2.1074 2.2122 -6.0532 17 6 3.6038 2.3460 -6.1720 18 1 4.1110 3.1743 -5.6998 19 6 4.3253 1.4109 -6.8834 20 7 3.7021 0.4355 -7.5078 21 14 6.1879 1.5294 -6.9604 22 1 6.7465 1.4447 -5.5871 23 1 6.7214 0.4135 -7.7821 24 1 6.5765 2.8249 -7.5737 25 6 1.2556 3.4132 -6.4689 26 6 1.2975 2.1624 -7.3503 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7205 1.6386 2.0601 33 1 2.1740 3.1133 1.1724 34 1 4.8601 3.5041 0.6291 35 1 7.0113 2.3764 1.6125 36 1 3.7170 -0.0310 2.7516 37 1 2.3767 2.9057 -3.6303 38 1 2.0783 0.3830 -4.9156 39 1 0.5289 1.2588 -4.9396 40 1 4.2120 -0.2629 -7.9471 41 1 0.3417 3.6012 -5.9052 42 1 1.7774 4.3000 -6.8286 43 1 1.8469 2.2268 -8.2895 44 1 0.4117 1.5274 -7.3664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343808482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:41 Heat of formation + Delta-G solvation = -18.309651 kcal Electronic energy + Delta-G solvation = -27282.905453 eV Core-core repulsion = 23396.621283 eV Total energy + Delta-G solvation = -3886.284170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.64393 -40.46181 -38.23654 -36.83344 -36.27313 -33.71208 -33.16233 -31.95630 -30.71261 -29.70686 -27.55870 -26.42675 -25.34272 -23.76714 -22.36856 -21.57678 -21.17077 -20.56568 -19.65388 -19.01899 -17.69133 -17.40514 -16.76629 -16.05138 -16.03327 -15.64125 -15.30211 -14.87243 -14.77806 -14.57855 -14.08143 -14.02891 -13.56593 -13.32528 -13.16704 -12.86915 -12.77887 -12.59808 -12.42791 -12.03526 -11.96130 -11.61890 -11.54135 -11.04307 -10.94333 -10.90428 -10.84601 -10.54883 -10.24686 -9.93223 -9.58681 -9.12855 -9.04868 -8.84495 -8.65172 -8.48374 -8.37588 -8.15855 -6.09529 -4.18325 1.61476 1.82046 2.30442 2.92168 3.03909 3.27964 3.33008 3.36038 3.61165 3.87852 4.35861 4.60758 4.71139 4.82700 4.92931 5.02464 5.18315 5.23106 5.34259 5.38358 5.52355 5.52969 5.65291 5.78185 5.94267 5.96604 6.02810 6.05362 6.27988 6.30528 6.39105 6.40230 6.46376 6.49718 6.66714 6.74660 6.98740 7.03483 7.09040 7.18482 7.34090 7.51469 7.80035 7.80805 8.16814 8.31463 8.54855 8.83545 9.49143 10.98188 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003905 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.145581 B = 7169.342104 C = 8521.196636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.586 5.586 4 C 0.184 3.816 5 C -0.198 4.198 6 C -0.188 4.188 7 C -0.049 4.049 8 O -0.179 6.179 9 C -0.030 4.030 10 C 0.510 3.490 11 O -0.518 6.518 12 C 0.494 3.506 13 O -0.530 6.530 14 N -0.667 5.667 15 C 0.161 3.839 16 C 0.020 3.980 17 C -0.498 4.498 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.876 5.876 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.211 4.211 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.411 0.589 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 0.337 18.513 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.320 5.320 4 C 0.062 3.938 5 C -0.200 4.200 6 C -0.207 4.207 7 C -0.116 4.116 8 O -0.074 6.074 9 C -0.099 4.099 10 C 0.293 3.707 11 O -0.393 6.393 12 C 0.274 3.726 13 O -0.409 6.409 14 N -0.316 5.316 15 C 0.039 3.961 16 C 0.019 3.981 17 C -0.535 4.535 18 H 0.078 0.922 19 C -0.130 4.130 20 N -0.513 5.513 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.249 4.249 26 C -0.175 4.175 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.218 0.782 36 H 0.216 0.784 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.637 -0.155 18.439 18.627 hybrid contribution 1.187 0.404 -0.231 1.275 sum -1.450 0.249 18.209 18.268 Atomic orbital electron populations 1.22102 0.95365 1.02253 1.01963 1.21897 0.95152 0.80999 1.03709 1.47898 1.63953 1.15035 1.05110 1.19739 0.89681 0.99469 0.84921 1.20806 0.97364 0.97843 1.04025 1.21857 0.91608 1.03026 1.04233 1.24034 1.00355 0.87664 0.99573 1.84057 1.23649 1.39944 1.59797 1.23854 0.81000 1.01057 1.04007 1.20522 0.79150 0.85773 0.85294 1.90718 1.42168 1.19776 1.86677 1.19903 0.81737 0.85817 0.85155 1.90660 1.41529 1.21842 1.86908 1.45874 1.58745 1.21946 1.05055 1.21196 0.96878 0.97122 0.80931 1.19033 0.93272 0.94287 0.91508 1.20332 0.89253 1.10914 1.33037 0.92182 1.24964 0.98259 0.95667 0.94100 1.69985 1.35376 1.12263 1.33632 0.86713 0.85789 0.77702 0.78165 1.20210 1.21238 1.20125 1.23059 1.01410 0.93689 1.06724 1.22456 1.00307 0.98001 0.96689 0.91780 0.93686 0.91148 0.87732 0.91553 0.89399 0.88829 0.83074 0.78194 0.78364 0.75271 0.90686 0.93802 0.92828 0.91661 0.90230 0.89272 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.66 37.16 0.36 -1.41 16 2 C 0.10 1.24 5.68 -4.04 -0.02 1.22 16 3 N -0.59 -7.81 2.46 -175.57 -0.43 -8.24 16 4 C 0.18 2.01 5.86 -5.20 -0.03 1.98 16 5 C -0.20 -2.30 5.75 -104.74 -0.60 -2.90 16 6 C -0.19 -2.35 10.87 -39.70 -0.43 -2.78 16 7 C -0.05 -0.54 12.09 29.41 0.36 -0.18 16 8 O -0.18 -2.05 10.65 5.71 0.06 -1.98 16 9 C -0.03 -0.31 12.01 29.41 0.35 0.05 16 10 C 0.51 8.53 7.70 -11.59 -0.09 8.44 16 11 O -0.52 -9.48 16.12 5.49 0.09 -9.39 16 12 C 0.49 9.16 7.65 -11.59 -0.09 9.07 16 13 O -0.53 -10.10 11.42 5.50 0.06 -10.03 16 14 N -0.67 -13.22 5.45 -60.73 -0.33 -13.55 16 15 C 0.16 3.52 5.51 -4.05 -0.02 3.50 16 16 C 0.02 0.46 1.49 -155.66 -0.23 0.23 16 17 C -0.50 -12.93 8.74 -34.44 -0.30 -13.23 16 18 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 20 N -0.88 -24.07 12.46 55.43 0.69 -23.38 16 21 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.21 -4.40 9.96 -26.70 -0.27 -4.66 16 26 C -0.14 -3.08 9.01 -26.70 -0.24 -3.32 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.98 6.46 -51.93 -0.34 0.64 16 30 H 0.10 1.52 5.84 -51.93 -0.30 1.21 16 31 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 32 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.09 1.09 7.50 -51.93 -0.39 0.70 16 34 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.41 8.12 7.94 -40.82 -0.32 7.79 16 38 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.04 0.92 8.09 -51.93 -0.42 0.49 16 40 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.09 2.18 8.05 -51.93 -0.42 1.76 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -29.78 375.96 -6.95 -36.73 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.38 Total: 10.50 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.35 Total: -2.14 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.07 Total: -45.17 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.21 Total: -21.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.78 -6.95 -36.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343808482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.422 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds