Wall clock time and date at job start Tue Mar 31 2020 12:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.46492 * 119.99901 * 94.12706 * 3 2 1 5 5 C 1.50700 * 109.47457 * 89.99638 * 4 3 2 6 6 C 1.41389 * 126.57690 * 89.99708 * 5 4 3 7 7 C 1.34505 * 106.83873 * 180.02562 * 6 5 4 8 8 O 1.34306 * 108.42548 * 0.02562 * 7 6 5 9 9 C 1.34299 * 109.47102 * 0.02562 * 8 7 6 10 10 C 1.34774 * 119.99806 * 274.12732 * 3 2 1 11 11 O 1.21356 * 119.99652 * 185.18556 * 10 3 2 12 12 C 1.49443 * 120.00232 * 5.18168 * 10 3 2 13 13 O 1.21350 * 120.00284 * 5.57219 * 12 10 3 14 14 N 1.34782 * 120.00291 * 185.56897 * 12 10 3 15 15 C 1.46490 * 120.00278 * 175.79676 * 14 12 10 16 16 C 1.53002 * 109.47299 * 185.05843 * 15 14 12 17 17 C 1.50697 * 115.54888 * 65.28680 * 16 15 14 18 18 H 1.07997 * 120.00030 * 268.22953 * 17 16 15 19 19 C 1.37879 * 120.00382 * 88.22610 * 17 16 15 20 20 N 1.31516 * 119.99735 * 3.01309 * 19 17 16 21 21 Si 1.86796 * 120.00283 * 183.01289 * 19 17 16 22 22 H 1.48497 * 109.47458 * 59.99642 * 21 19 17 23 23 H 1.48502 * 109.47239 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47041 * 299.99706 * 21 19 17 25 25 C 1.52995 * 117.50109 * 279.61754 * 16 15 14 26 26 C 1.52999 * 117.50084 * 210.95702 * 16 15 14 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47363 * 299.99915 * 1 2 3 29 29 H 1.09000 * 109.47169 * 60.00097 * 1 2 3 30 30 H 1.09003 * 109.47309 * 239.99890 * 2 1 3 31 31 H 1.09000 * 109.47169 * 119.99903 * 2 1 3 32 32 H 1.09006 * 109.47484 * 329.99960 * 4 3 2 33 33 H 1.08997 * 109.47227 * 209.99969 * 4 3 2 34 34 H 1.08001 * 126.57704 * 359.77816 * 6 5 4 35 35 H 1.08006 * 125.78788 * 180.02562 * 7 6 5 36 36 H 1.08010 * 125.78504 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99287 * 355.79487 * 14 12 10 38 38 H 1.09002 * 109.47357 * 305.05956 * 15 14 12 39 39 H 1.09003 * 109.47051 * 65.05711 * 15 14 12 40 40 H 0.96995 * 119.99972 * 185.01109 * 20 19 17 41 41 H 1.09012 * 117.49610 * 359.97438 * 25 16 15 42 42 H 1.08996 * 117.50289 * 145.01355 * 25 16 15 43 43 H 1.09006 * 117.49952 * 214.98101 * 26 16 15 44 44 H 1.09005 * 117.49770 * 359.97153 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3485 2.0414 1.2654 5 6 3.7978 1.7954 1.5972 6 6 4.8974 2.5985 1.2164 7 6 5.9993 2.0151 1.7212 8 8 5.6276 0.9073 2.3833 9 6 4.2938 0.7686 2.3106 10 6 2.1637 2.0446 -1.1642 11 8 2.6562 3.1537 -1.1731 12 6 1.7186 1.4143 -2.4440 13 8 1.1351 0.3504 -2.4257 14 7 1.9652 2.0274 -3.6187 15 6 1.6117 1.3674 -4.8778 16 6 2.1074 2.2122 -6.0532 17 6 3.6038 2.3460 -6.1720 18 1 4.1110 3.1743 -5.6998 19 6 4.3253 1.4109 -6.8834 20 7 3.7021 0.4355 -7.5078 21 14 6.1879 1.5294 -6.9604 22 1 6.7465 1.4447 -5.5871 23 1 6.7214 0.4135 -7.7821 24 1 6.5765 2.8249 -7.5737 25 6 1.2556 3.4132 -6.4689 26 6 1.2975 2.1624 -7.3503 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7205 1.6386 2.0601 33 1 2.1740 3.1133 1.1724 34 1 4.8601 3.5041 0.6291 35 1 7.0113 2.3764 1.6125 36 1 3.7170 -0.0310 2.7516 37 1 2.3767 2.9057 -3.6303 38 1 2.0783 0.3830 -4.9156 39 1 0.5289 1.2588 -4.9396 40 1 4.2120 -0.2629 -7.9471 41 1 0.3417 3.6012 -5.9052 42 1 1.7774 4.3000 -6.8286 43 1 1.8469 2.2268 -8.2895 44 1 0.4117 1.5274 -7.3664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343808482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:40 Heat of formation + Delta-G solvation = -36.239226 kcal Electronic energy + Delta-G solvation = -27283.682938 eV Core-core repulsion = 23396.621283 eV Total energy + Delta-G solvation = -3887.061655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47641 -41.79310 -39.67994 -38.49955 -37.49235 -35.03192 -34.33147 -33.95104 -31.62690 -30.62133 -28.94695 -27.84197 -27.14885 -24.91258 -23.56880 -22.89636 -22.42438 -21.59281 -21.33877 -20.42292 -18.91105 -18.47168 -18.06967 -17.74279 -17.07547 -16.89195 -16.65714 -16.57077 -16.10794 -15.80314 -15.47761 -15.31950 -14.89668 -14.64482 -14.35555 -14.17377 -13.88953 -13.71581 -13.64455 -13.45513 -13.29582 -12.99752 -12.94820 -12.83603 -12.46518 -12.42974 -12.14886 -12.02620 -11.88296 -11.41629 -11.01441 -10.87896 -10.45599 -10.37933 -10.11733 -9.97649 -9.82244 -9.47767 -8.12768 -6.25283 0.43188 0.80008 1.26868 1.39721 1.41086 1.47506 1.81678 2.20193 2.30376 2.40160 2.62525 3.15142 3.35582 3.58343 3.87194 3.89237 4.12688 4.14175 4.20968 4.40385 4.49644 4.51326 4.62257 4.64858 4.66738 4.67539 4.80493 4.87701 4.91416 5.01664 5.06797 5.11929 5.26714 5.28815 5.29951 5.48302 5.53562 5.54765 5.55891 5.69333 5.74680 5.98110 6.18017 6.34720 6.39062 6.77181 6.81364 7.05503 7.43865 8.94275 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003905 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.145581 B = 7169.342104 C = 8521.196636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.101 3.899 3 N -0.572 5.572 4 C 0.184 3.816 5 C -0.220 4.220 6 C -0.220 4.220 7 C -0.048 4.048 8 O -0.187 6.187 9 C -0.017 4.017 10 C 0.507 3.493 11 O -0.542 6.542 12 C 0.491 3.509 13 O -0.535 6.535 14 N -0.673 5.673 15 C 0.179 3.821 16 C -0.004 4.004 17 C -0.506 4.506 18 H 0.054 0.946 19 C 0.030 3.970 20 N -0.902 5.902 21 Si 0.942 3.058 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.183 4.183 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.226 0.774 36 H 0.239 0.761 37 H 0.411 0.589 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.260 0.740 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -0.093 20.938 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.305 5.305 4 C 0.063 3.937 5 C -0.223 4.223 6 C -0.240 4.240 7 C -0.115 4.115 8 O -0.083 6.083 9 C -0.086 4.086 10 C 0.290 3.710 11 O -0.419 6.419 12 C 0.272 3.728 13 O -0.415 6.415 14 N -0.323 5.323 15 C 0.055 3.945 16 C -0.005 4.005 17 C -0.544 4.544 18 H 0.072 0.928 19 C -0.171 4.171 20 N -0.540 5.540 21 Si 0.768 3.232 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.220 4.220 26 C -0.180 4.180 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.243 0.757 36 H 0.256 0.744 37 H 0.247 0.753 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.944 -0.595 20.901 21.115 hybrid contribution 1.260 0.513 -0.906 1.634 sum -1.685 -0.083 19.994 20.065 Atomic orbital electron populations 1.22032 0.94593 1.02948 1.01488 1.22009 0.95734 0.80019 1.04269 1.48020 1.62241 1.15383 1.04844 1.19974 0.90290 0.99012 0.84418 1.20920 0.97350 0.98674 1.05330 1.21965 0.93177 1.03393 1.05416 1.24493 1.01157 0.87204 0.98657 1.84081 1.24487 1.39924 1.59769 1.24567 0.80533 1.00996 1.02470 1.20180 0.79571 0.85685 0.85585 1.90711 1.43613 1.20668 1.86922 1.20335 0.81217 0.85660 0.85634 1.90661 1.41495 1.22049 1.87251 1.45793 1.59536 1.21997 1.04964 1.20786 0.96861 0.95268 0.81538 1.19076 0.92483 0.96523 0.92368 1.20596 0.90960 1.10464 1.32360 0.92825 1.25589 1.01722 0.95640 0.94160 1.70081 1.36456 1.12867 1.34568 0.85872 0.81695 0.77773 0.77844 1.20417 1.21036 1.19551 1.23040 1.01463 0.92571 1.04953 1.22367 1.00407 0.99751 0.95474 0.90537 0.91328 0.94352 0.90684 0.87474 0.85202 0.90015 0.84722 0.75720 0.74447 0.75301 0.94100 0.92843 0.93076 0.89090 0.90133 0.91663 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.66 71.98 0.70 -2.34 16 2 C 0.10 2.15 5.68 86.38 0.49 2.64 16 3 N -0.57 -14.28 2.46 -827.74 -2.04 -16.32 16 4 C 0.18 3.57 5.86 85.63 0.50 4.07 16 5 C -0.22 -4.67 5.75 -19.94 -0.11 -4.79 16 6 C -0.22 -5.41 10.87 22.19 0.24 -5.17 16 7 C -0.05 -0.99 12.09 66.97 0.81 -0.18 16 8 O -0.19 -3.82 10.65 -2.48 -0.03 -3.85 16 9 C -0.02 -0.29 12.01 66.97 0.80 0.51 16 10 C 0.51 16.90 7.70 87.27 0.67 17.57 16 11 O -0.54 -20.07 16.12 -3.26 -0.05 -20.12 16 12 C 0.49 18.38 7.65 87.27 0.67 19.05 16 13 O -0.54 -20.56 11.42 -3.25 -0.04 -20.60 16 14 N -0.67 -27.11 5.45 -464.42 -2.53 -29.64 16 15 C 0.18 7.93 5.51 86.38 0.48 8.41 16 16 C 0.00 -0.18 1.49 -52.93 -0.08 -0.26 16 17 C -0.51 -26.65 8.74 25.60 0.22 -26.43 16 18 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 19 C 0.03 1.61 5.42 84.65 0.46 2.07 16 20 N -0.90 -50.55 12.46 21.45 0.27 -50.28 16 21 Si 0.94 43.29 29.54 68.60 2.03 45.31 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 C -0.18 -7.43 9.96 30.62 0.30 -7.13 16 26 C -0.14 -6.42 9.01 30.62 0.28 -6.15 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 1.02 6.46 -2.39 -0.02 1.00 16 30 H 0.07 2.10 5.84 -2.39 -0.01 2.09 16 31 H 0.11 1.44 8.04 -2.39 -0.02 1.42 16 32 H 0.13 1.43 8.07 -2.38 -0.02 1.41 16 33 H 0.08 1.81 7.50 -2.39 -0.02 1.80 16 34 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.23 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.24 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.41 16.52 7.94 -92.71 -0.74 15.78 16 38 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 40 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 41 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.06 3.25 8.05 -2.38 -0.02 3.23 16 44 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -66.01 375.96 4.31 -61.69 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.28 Total: 31.91 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.43 Total: 1.88 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -4.30 Total: -96.24 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.12 Total: -44.56 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.01 4.31 -61.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343808482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.453 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds