Wall clock time and date at job start Tue Mar 31 2020 12:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47217 * 2 1 4 4 C 1.36944 * 119.99670 * 275.92731 * 3 2 1 5 5 H 1.07996 * 120.00376 * 328.71560 * 4 3 2 6 6 C 1.38813 * 119.99625 * 148.71281 * 4 3 2 7 7 N 1.31626 * 120.00193 * 340.35815 * 6 4 3 8 8 Si 1.86801 * 120.00078 * 160.36117 * 6 4 3 9 9 H 1.48491 * 109.47346 * 89.99876 * 8 6 4 10 10 H 1.48502 * 109.47182 * 209.99984 * 8 6 4 11 11 H 1.48500 * 109.46870 * 329.99551 * 8 6 4 12 12 C 1.46498 * 120.00279 * 95.93042 * 3 2 1 13 13 H 1.08994 * 109.47292 * 183.96242 * 12 3 2 14 14 C 1.52995 * 109.47137 * 303.96952 * 12 3 2 15 15 C 1.50700 * 109.46865 * 63.96392 * 12 3 2 16 16 O 1.21285 * 120.00175 * 0.02562 * 15 12 3 17 17 N 1.34774 * 119.99924 * 180.02562 * 15 12 3 18 18 C 1.46504 * 120.00481 * 180.02562 * 17 15 12 19 19 C 1.50694 * 109.47595 * 179.97438 * 18 17 15 20 20 C 1.38369 * 119.84646 * 269.72940 * 19 18 17 21 21 C 1.37949 * 120.14540 * 179.72117 * 20 19 18 22 22 C 1.39626 * 119.84932 * 0.57479 * 21 20 19 23 23 C 1.47724 * 120.15356 * 179.68129 * 22 21 20 24 24 O 1.21464 * 120.00447 * 180.02562 * 23 22 21 25 25 O 1.34720 * 119.99774 * 0.02562 * 23 22 21 26 26 C 1.39634 * 119.70119 * 359.69784 * 22 21 20 27 27 C 1.37948 * 119.84548 * 0.02562 * 26 22 21 28 28 H 1.08999 * 109.47393 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46722 * 300.00412 * 1 2 3 30 30 H 1.09003 * 109.47149 * 59.99844 * 1 2 3 31 31 H 1.09001 * 109.47394 * 239.99909 * 2 1 3 32 32 H 1.09003 * 109.47149 * 120.00156 * 2 1 3 33 33 H 0.96998 * 120.00354 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47559 * 180.02562 * 14 12 3 35 35 H 1.09005 * 109.46538 * 299.99667 * 14 12 3 36 36 H 1.08994 * 109.47609 * 59.99484 * 14 12 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 17 15 12 38 38 H 1.08999 * 109.47004 * 300.00629 * 18 17 15 39 39 H 1.09003 * 109.46864 * 59.99616 * 18 17 15 40 40 H 1.07996 * 119.93031 * 359.97302 * 20 19 18 41 41 H 1.08000 * 120.07607 * 180.26726 * 21 20 19 42 42 H 0.96691 * 116.99958 * 180.02562 * 25 23 22 43 43 H 1.08002 * 120.07495 * 179.97438 * 26 22 21 44 44 H 1.07992 * 119.92299 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1311 2.0675 -1.1797 5 1 2.3613 1.5383 -2.0925 6 6 1.9493 3.4435 -1.2021 7 7 1.3058 4.0385 -0.2201 8 14 2.6180 4.4509 -2.6260 9 1 1.5879 4.5471 -3.6912 10 1 2.9651 5.8135 -2.1485 11 1 3.8329 3.7928 -3.1703 12 6 2.3861 2.0282 1.2619 13 1 2.6567 3.0668 1.0723 14 6 1.1989 1.9781 2.2256 15 6 3.5597 1.3068 1.8728 16 8 4.0418 0.3470 1.3094 17 7 4.0736 1.7281 3.0453 18 6 5.2149 1.0272 3.6391 19 6 5.5932 1.6926 4.9371 20 6 6.5226 2.7176 4.9403 21 6 6.8692 3.3349 6.1243 22 6 6.2887 2.9151 7.3228 23 6 6.6602 3.5667 8.5954 24 8 6.1538 3.1990 9.6365 25 8 7.5605 4.5688 8.6014 26 6 5.3557 1.8763 7.3130 27 6 5.0140 1.2716 6.1211 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.1785 5.0000 -0.2360 34 1 1.4723 2.4598 3.1644 35 1 0.3500 2.4999 1.7837 36 1 0.9283 0.9394 2.4152 37 1 3.6883 2.4959 3.4958 38 1 4.9449 -0.0118 3.8280 39 1 6.0608 1.0636 2.9525 40 1 6.9748 3.0379 4.0133 41 1 7.5916 4.1377 6.1249 42 1 7.7719 4.9639 9.4582 43 1 4.9032 1.5464 8.2366 44 1 4.2922 0.4683 6.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:53 Heat of formation + Delta-G solvation = -82.316094 kcal Electronic energy + Delta-G solvation = -26574.709060 eV Core-core repulsion = 22685.649362 eV Total energy + Delta-G solvation = -3889.059698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75159 -39.51182 -38.70887 -36.44718 -35.89363 -34.49722 -31.94484 -31.82726 -31.35186 -30.41873 -28.30453 -26.91142 -24.21674 -23.74624 -23.03370 -22.49998 -21.14148 -20.71163 -19.32193 -18.49044 -17.81868 -17.16484 -16.31399 -15.96520 -15.66533 -15.57491 -15.14690 -14.72576 -14.44589 -14.30982 -13.90537 -13.77097 -13.57112 -13.38825 -13.08257 -12.81054 -12.42993 -12.32433 -11.92191 -11.84401 -11.76713 -11.51890 -11.40348 -11.29708 -11.13294 -10.95714 -10.93866 -10.70058 -10.33284 -10.11874 -9.77558 -9.66623 -9.40536 -9.32929 -8.73667 -8.62098 -8.51083 -6.67031 -5.88184 -3.29899 0.29171 1.04848 2.17313 2.65186 3.32183 3.37282 3.42382 3.47464 3.53253 3.93325 4.40996 4.48073 4.49133 4.63369 4.76489 5.03553 5.09510 5.29180 5.41564 5.43627 5.49738 5.66459 5.72656 5.88998 5.97510 6.00050 6.10649 6.21669 6.26483 6.28476 6.40953 6.49808 6.49818 6.58771 6.64919 6.78341 6.89648 7.07533 7.21798 7.31782 7.39840 7.52344 7.79730 8.06451 8.43903 8.96501 9.19117 9.78586 10.33681 11.19127 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002802 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.523558 B = 9989.571478 C =10763.677734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 N -0.561 5.561 4 C -0.247 4.247 5 H 0.065 0.935 6 C 0.004 3.996 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.171 3.829 13 H 0.125 0.875 14 C -0.139 4.139 15 C 0.490 3.510 16 O -0.540 6.540 17 N -0.740 5.740 18 C 0.153 3.847 19 C -0.058 4.058 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.132 4.132 23 C 0.529 3.471 24 O -0.516 6.516 25 O -0.512 6.512 26 C -0.055 4.055 27 C -0.114 4.114 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.255 0.745 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.414 0.586 43 H 0.138 0.862 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -0.398 16.226 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 N -0.279 5.279 4 C -0.376 4.376 5 H 0.083 0.917 6 C -0.195 4.195 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.059 3.941 13 H 0.142 0.858 14 C -0.198 4.198 15 C 0.277 3.723 16 O -0.415 6.415 17 N -0.396 5.396 18 C 0.029 3.971 19 C -0.059 4.059 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.133 4.133 23 C 0.373 3.627 24 O -0.405 6.405 25 O -0.324 6.324 26 C -0.073 4.073 27 C -0.133 4.133 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.273 0.727 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.265 -1.239 15.651 18.229 hybrid contribution 0.362 1.304 0.205 1.369 sum 9.626 0.065 15.855 18.549 Atomic orbital electron populations 1.22406 0.99768 0.98402 1.02044 1.20736 0.91228 0.86700 0.98875 1.43507 1.72003 1.10146 1.02293 1.19157 1.41231 0.89956 0.87303 0.91724 1.25047 0.98548 0.98008 0.97847 1.69984 1.40974 1.09494 1.33572 0.86351 0.79229 0.79445 0.82146 1.21303 1.21524 1.20448 1.20322 0.88590 0.99033 0.86196 0.85764 1.22086 1.00662 0.99857 0.97190 1.23405 0.85736 0.84517 0.78688 1.90574 1.61932 1.28055 1.60985 1.46492 1.33776 1.34832 1.24475 1.20177 0.90885 0.95945 0.90083 1.20381 0.94958 0.95197 0.95349 1.21188 0.97898 0.95855 0.98517 1.21466 0.97320 0.98040 0.91071 1.19056 1.02952 1.00450 0.90848 1.20946 0.75574 0.76915 0.89235 1.90890 1.52511 1.62911 1.34237 1.84564 1.57835 1.48475 1.41515 1.21265 0.94059 0.92868 0.99080 1.21114 1.00234 1.00717 0.91207 0.95173 0.93309 0.92792 0.94409 0.94040 0.93543 0.94590 0.90134 0.94521 0.76850 0.90892 0.90837 0.84625 0.84295 0.72706 0.84369 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 10.00 37.16 0.37 -2.99 16 2 C 0.15 3.36 5.02 -4.04 -0.02 3.34 16 3 N -0.56 -13.83 2.12 -166.99 -0.35 -14.18 16 4 C -0.25 -6.65 9.53 -15.06 -0.14 -6.80 16 5 H 0.07 1.77 7.90 -52.49 -0.41 1.36 16 6 C 0.00 0.11 4.83 -17.43 -0.08 0.02 16 7 N -0.90 -23.83 11.11 55.49 0.62 -23.21 16 8 Si 0.90 21.08 29.60 -169.99 -5.03 16.05 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.17 3.76 2.22 -69.09 -0.15 3.61 16 13 H 0.13 3.05 5.75 -51.93 -0.30 2.75 16 14 C -0.14 -2.69 7.94 37.15 0.30 -2.40 16 15 C 0.49 9.89 6.87 -10.99 -0.08 9.82 16 16 O -0.54 -12.62 14.96 5.55 0.08 -12.54 16 17 N -0.74 -11.27 5.44 -61.47 -0.33 -11.60 16 18 C 0.15 1.95 5.79 -5.19 -0.03 1.92 16 19 C -0.06 -0.60 5.25 -104.53 -0.55 -1.15 16 20 C -0.12 -1.10 9.68 -39.64 -0.38 -1.49 16 21 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 22 C -0.13 -1.30 5.87 -104.98 -0.62 -1.91 16 23 C 0.53 5.24 8.27 34.61 0.29 5.53 16 24 O -0.52 -6.47 17.13 -19.24 -0.33 -6.80 16 25 O -0.51 -3.56 12.68 -40.55 -0.51 -4.07 16 26 C -0.05 -0.53 9.60 -39.17 -0.38 -0.90 16 27 C -0.11 -1.09 9.68 -39.64 -0.38 -1.47 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.98 6.11 -51.93 -0.32 0.66 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.04 0.91 6.66 -51.93 -0.35 0.56 16 33 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.04 0.58 7.56 -51.93 -0.39 0.19 16 35 H 0.08 1.76 7.83 -51.93 -0.41 1.36 16 36 H 0.04 0.68 6.63 -51.93 -0.34 0.34 16 37 H 0.40 5.39 7.88 -40.82 -0.32 5.07 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.14 1.02 7.61 -52.49 -0.40 0.62 16 42 H 0.41 1.03 9.11 45.56 0.42 1.45 16 43 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -32.36 370.19 -7.84 -40.20 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.31 Total: 6.36 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.24 Total: 4.22 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.07 Total: -48.99 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.76 Total: -23.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.36 -7.84 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.114 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds