Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48495 * 109.47118 * 240.00008 * 3 2 1 5 5 H 1.48502 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47109 * 119.99994 * 3 2 1 7 7 C 1.37874 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99747 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47248 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47602 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00184 * 179.97438 * 11 10 9 13 13 O 1.20829 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47423 * 300.00365 * 14 12 11 16 16 C 1.38248 * 119.97094 * 60.00162 * 15 14 12 17 17 C 1.38196 * 120.02484 * 180.02562 * 16 15 14 18 18 C 1.38458 * 119.97492 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.02786 * 179.97438 * 18 17 16 20 20 C 1.38465 * 119.94675 * 0.24873 * 18 17 16 21 21 C 1.38196 * 119.97501 * 359.51590 * 20 18 17 22 22 C 1.53005 * 109.46816 * 60.00945 * 14 12 11 23 23 C 1.52996 * 109.47095 * 59.99621 * 22 14 12 24 24 C 1.52997 * 109.47242 * 60.00241 * 23 22 14 25 25 C 1.53002 * 109.47050 * 299.99565 * 24 23 22 26 26 C 1.52996 * 109.46743 * 60.00129 * 25 24 23 27 27 H 0.96999 * 119.99833 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47261 * 60.00225 * 9 7 2 29 29 H 1.08997 * 109.47314 * 299.99989 * 9 7 2 30 30 H 1.09004 * 109.47292 * 59.99719 * 10 9 7 31 31 H 1.09007 * 109.47113 * 300.00330 * 10 9 7 32 32 H 1.08001 * 119.98900 * 0.02562 * 16 15 14 33 33 H 1.07995 * 120.01604 * 179.97438 * 17 16 15 34 34 H 1.08007 * 120.01049 * 179.72700 * 20 18 17 35 35 H 1.07993 * 119.98770 * 180.23077 * 21 20 18 36 36 H 1.08994 * 109.46811 * 179.97438 * 22 14 12 37 37 H 1.08995 * 109.46774 * 299.99619 * 22 14 12 38 38 H 1.08994 * 109.47535 * 299.99856 * 23 22 14 39 39 H 1.09003 * 109.46733 * 180.02562 * 23 22 14 40 40 H 1.09001 * 109.47146 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47023 * 59.99670 * 24 23 22 42 42 H 1.08994 * 109.46992 * 299.99935 * 25 24 23 43 43 H 1.08995 * 109.46946 * 180.02562 * 25 24 23 44 44 H 1.09006 * 109.47228 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47442 * 60.00624 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 0.0011 12 6 2.2506 -6.0452 0.0007 13 8 3.4572 -5.9819 0.0003 14 6 1.5664 -7.3880 0.0019 15 6 0.7067 -7.5127 1.2332 16 6 -0.3207 -6.6139 1.4521 17 6 -1.1095 -6.7269 2.5813 18 6 -0.8708 -7.7411 3.4931 19 9 -1.6410 -7.8523 4.5976 20 6 0.1614 -8.6379 3.2751 21 6 0.9457 -8.5259 2.1428 22 6 0.6910 -7.5153 -1.2466 23 6 1.5640 -7.3887 -2.4966 24 6 2.6178 -8.4980 -2.4973 25 6 3.4932 -8.3706 -1.2490 26 6 2.6202 -8.4972 0.0011 27 1 -0.4850 0.8401 0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8902 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 -0.5069 -5.8231 0.7405 33 1 -1.9117 -6.0244 2.7524 34 1 0.3512 -9.4268 3.9879 35 1 1.7485 -9.2275 1.9707 36 1 0.1966 -8.4867 -1.2459 37 1 -0.0596 -6.7251 -1.2460 38 1 2.0588 -6.4176 -2.4975 39 1 0.9403 -7.4790 -3.3860 40 1 3.2394 -8.4080 -3.3882 41 1 2.1229 -9.4692 -2.4965 42 1 3.9880 -7.3994 -1.2498 43 1 4.2441 -9.1606 -1.2497 44 1 3.2439 -8.4069 0.8905 45 1 2.1255 -9.4684 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064217930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = -147.968293 kcal Electronic energy + Delta-G solvation = -27598.499224 eV Core-core repulsion = 23686.672672 eV Total energy + Delta-G solvation = -3911.826552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91704 -42.41052 -40.16861 -38.74205 -37.36662 -35.47628 -33.82896 -32.60986 -32.16394 -31.44447 -29.51373 -27.29868 -25.35528 -24.55819 -23.66946 -22.93107 -22.67770 -21.75150 -20.57540 -18.89710 -18.67965 -18.02813 -17.75499 -17.40864 -17.01154 -16.75390 -16.60416 -16.49925 -15.74163 -15.15011 -15.10140 -14.80401 -14.64033 -14.51960 -14.38822 -14.35327 -14.26924 -13.51983 -13.26916 -13.17745 -13.17459 -13.00365 -12.87761 -12.68970 -12.60142 -12.51410 -12.04417 -11.95141 -11.92148 -11.68468 -11.50722 -11.44568 -11.18966 -11.06725 -10.85907 -10.62208 -10.08018 -9.60315 -8.28422 -6.41647 0.01914 0.25701 1.19582 1.39142 1.42515 1.50306 1.74787 2.38067 2.60191 3.05931 3.23899 3.36836 3.41870 3.68463 3.82243 3.92106 3.95417 4.10885 4.18904 4.23190 4.24058 4.29046 4.33956 4.45491 4.49282 4.56855 4.67126 4.69660 4.85635 4.90116 4.96146 5.02468 5.07620 5.14659 5.19523 5.21266 5.24850 5.28450 5.32718 5.38012 5.44961 5.45479 5.50443 5.66852 5.78017 5.88084 6.05244 6.70154 6.77182 7.28108 8.83693 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.004041 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.798999 B = 6927.281978 C = 8869.163673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.036 3.964 10 C 0.092 3.908 11 O -0.359 6.359 12 C 0.465 3.535 13 O -0.529 6.529 14 C 0.003 3.997 15 C -0.101 4.101 16 C -0.081 4.081 17 C -0.162 4.162 18 C 0.085 3.915 19 F -0.147 7.147 20 C -0.149 4.149 21 C -0.075 4.075 22 C -0.103 4.103 23 C -0.128 4.128 24 C -0.114 4.114 25 C -0.138 4.138 26 C -0.097 4.097 27 H 0.268 0.732 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -23.467 0.286 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.001 4.001 10 C 0.018 3.982 11 O -0.275 6.275 12 C 0.309 3.691 13 O -0.419 6.419 14 C 0.002 3.998 15 C -0.102 4.102 16 C -0.099 4.099 17 C -0.181 4.181 18 C 0.066 3.934 19 F -0.126 7.126 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.140 4.140 23 C -0.165 4.165 24 C -0.151 4.151 25 C -0.175 4.175 26 C -0.134 4.134 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.892 -23.288 0.328 23.307 hybrid contribution 0.114 1.757 0.279 1.783 sum 1.006 -21.531 0.606 21.563 Atomic orbital electron populations 1.70080 1.07729 1.28307 1.50235 1.25914 0.95811 1.03234 0.94020 0.85430 0.78279 0.77656 0.79285 1.19033 1.20353 1.19190 1.21332 0.93590 0.91369 1.52715 0.91967 1.18922 0.94190 0.90464 0.96569 1.23095 0.95073 0.79575 1.00416 1.86512 1.42417 1.15582 1.82984 1.24226 0.86382 0.87393 0.71104 1.90550 1.16664 1.88147 1.46537 1.19610 0.96113 0.88215 0.95825 1.19629 0.96716 0.97551 0.96262 1.21110 0.93873 0.98115 0.96800 1.21271 1.02606 0.99165 0.95063 1.17991 0.92828 0.98005 0.84536 1.91481 1.74172 1.95766 1.51142 1.21409 0.95027 1.00370 0.99951 1.21311 0.99022 0.97357 0.91575 1.21701 0.96868 1.04780 0.90685 1.21636 0.98139 0.98433 0.98317 1.21554 0.96851 0.99080 0.97659 1.21804 0.98508 1.02909 0.94267 1.21659 0.95479 0.96849 0.99406 0.92332 0.97479 0.97641 0.92894 0.92598 0.85329 0.84385 0.81839 0.81341 0.87172 0.91558 0.95424 0.89638 0.91759 0.89240 0.92852 0.89929 0.91126 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.35 13.29 21.45 0.28 -55.07 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.04 1.93 5.35 29.85 0.16 2.09 16 10 C 0.09 4.19 5.40 71.98 0.39 4.58 16 11 O -0.36 -14.29 8.24 -51.39 -0.42 -14.72 16 12 C 0.46 15.92 5.00 71.24 0.36 16.27 16 13 O -0.53 -20.32 13.41 21.95 0.29 -20.03 16 14 C 0.00 0.08 0.56 -53.67 -0.03 0.05 16 15 C -0.10 -2.36 4.75 -19.86 -0.09 -2.45 16 16 C -0.08 -2.18 8.46 22.26 0.19 -1.99 16 17 C -0.16 -4.17 10.03 22.31 0.22 -3.95 16 18 C 0.09 2.00 7.30 22.38 0.16 2.17 16 19 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 20 C -0.15 -2.73 10.03 22.31 0.22 -2.51 16 21 C -0.08 -1.34 8.97 22.26 0.20 -1.14 16 22 C -0.10 -2.14 4.48 30.59 0.14 -2.00 16 23 C -0.13 -2.71 5.70 30.59 0.17 -2.53 16 24 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 25 C -0.14 -2.75 5.63 30.59 0.17 -2.58 16 26 C -0.10 -1.77 3.03 30.59 0.09 -1.67 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 31 H 0.06 2.54 8.13 -2.38 -0.02 2.52 16 32 H 0.13 3.90 6.38 -2.91 -0.02 3.88 16 33 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.17 1.94 5.89 -2.91 -0.02 1.92 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 38 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.50 5.52 -2.39 -0.01 1.48 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.35 7.47 -2.38 -0.02 1.34 16 45 H 0.12 1.26 7.51 -2.39 -0.02 1.24 16 Total: -1.00 -67.73 361.04 7.18 -60.55 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.99 Total: 14.04 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.23 Total: -27.76 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.13 Total: -34.75 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.73 7.18 -60.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064217930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.421 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds