Wall clock time and date at job start Tue Mar 31 2020 12:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48497 * 109.46992 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47323 * 29.99618 * 3 2 1 6 6 H 1.48501 * 109.46930 * 149.99903 * 3 2 1 7 7 C 1.37877 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99851 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47234 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47286 * 179.97438 * 11 10 9 13 13 C 1.47899 * 111.00068 * 69.87031 * 12 11 10 14 14 C 1.53997 * 107.05889 * 145.84368 * 13 12 11 15 15 C 1.54593 * 105.13807 * 358.77516 * 14 13 12 16 16 H 1.09007 * 110.72450 * 96.40308 * 15 14 13 17 17 N 1.46506 * 110.72363 * 219.68019 * 15 14 13 18 18 C 1.38997 * 120.00293 * 273.54854 * 17 15 14 19 19 C 1.39142 * 119.70565 * 359.97438 * 18 17 15 20 20 C 1.38299 * 119.09767 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.50269 * 359.97438 * 20 19 18 22 22 N 1.48006 * 120.33092 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00139 * 0.02562 * 22 21 20 24 24 O 1.21804 * 119.99604 * 180.02562 * 22 21 20 25 25 C 1.38023 * 119.33317 * 0.02562 * 21 20 19 26 26 N 1.31968 * 120.85440 * 359.73658 * 25 21 20 27 27 C 1.48538 * 111.00123 * 187.26873 * 12 11 10 28 28 H 0.97000 * 120.00196 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47537 * 60.00228 * 9 7 2 30 30 H 1.08995 * 109.47171 * 299.99448 * 9 7 2 31 31 H 1.08991 * 109.47153 * 59.99739 * 10 9 7 32 32 H 1.09004 * 109.46763 * 299.99767 * 10 9 7 33 33 H 1.09001 * 109.47537 * 59.99765 * 11 10 9 34 34 H 1.09004 * 109.46840 * 299.99456 * 11 10 9 35 35 H 1.09004 * 109.91646 * 26.49394 * 13 12 11 36 36 H 1.08998 * 109.92144 * 265.19786 * 13 12 11 37 37 H 1.09004 * 110.30998 * 117.69119 * 14 13 12 38 38 H 1.08998 * 110.30811 * 239.85930 * 14 13 12 39 39 H 0.96998 * 119.99183 * 93.55209 * 17 15 14 40 40 H 1.08004 * 120.44884 * 359.95565 * 19 18 17 41 41 H 1.07996 * 120.74749 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.57147 * 180.02562 * 25 21 20 43 43 H 1.09007 * 110.66246 * 318.71191 * 27 12 11 44 44 H 1.08993 * 110.66698 * 81.83885 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0022 12 7 6.0412 -4.0215 0.0027 13 6 5.7709 -4.6797 -1.2938 14 6 6.9407 -5.6442 -1.5633 15 6 7.8961 -5.4660 -0.3611 16 1 7.7149 -6.2324 0.3926 17 7 9.2933 -5.4899 -0.8012 18 6 9.9620 -6.7020 -0.9262 19 6 9.2986 -7.8891 -0.6313 20 6 9.9758 -9.0880 -0.7605 21 6 11.2987 -9.0598 -1.1825 22 7 12.0615 -10.3189 -1.3352 23 8 11.5293 -11.3868 -1.0908 24 8 13.2215 -10.2870 -1.7053 25 6 11.8948 -7.8458 -1.4580 26 7 11.2227 -6.7173 -1.3303 27 6 7.5154 -4.0648 0.1794 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6585 -3.1501 -0.8891 32 1 3.6578 -3.1505 0.8908 33 1 5.9142 -2.1230 0.8927 34 1 5.9155 -2.1224 -0.8874 35 1 5.7160 -3.9323 -2.0854 36 1 4.8354 -5.2365 -1.2398 37 1 6.5804 -6.6719 -1.6112 38 1 7.4461 -5.3761 -2.4911 39 1 9.7516 -4.6598 -1.0052 40 1 8.2690 -7.8743 -0.3055 41 1 9.4867 -10.0250 -0.5390 42 1 12.9232 -7.8194 -1.7869 43 1 7.9963 -3.2823 -0.4077 44 1 7.7794 -3.9739 1.2329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072664978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:52 Heat of formation + Delta-G solvation = 38.970046 kcal Electronic energy + Delta-G solvation = -25408.573899 eV Core-core repulsion = 21557.066314 eV Total energy + Delta-G solvation = -3851.507585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48035 -41.08549 -39.49717 -36.82242 -36.42255 -34.27481 -33.50453 -32.36137 -31.23646 -30.29381 -28.78487 -26.83982 -25.97894 -24.74345 -23.15493 -22.98255 -21.47973 -21.04617 -19.90922 -19.72350 -19.12632 -18.46147 -17.80455 -17.47284 -16.76594 -16.51521 -15.97291 -15.38376 -15.16344 -14.79655 -14.32674 -14.26460 -14.09582 -13.96636 -13.64639 -13.41916 -12.96140 -12.70196 -12.41871 -11.85859 -11.84255 -11.80106 -11.69098 -11.54824 -11.41414 -11.27834 -11.16151 -11.03713 -10.76146 -10.72482 -10.48139 -10.03684 -9.81343 -9.68749 -9.25246 -8.78083 -8.60068 -8.57595 -6.09785 -4.08090 -0.48862 0.35173 0.99894 1.09367 2.15935 2.87611 3.24467 3.32533 3.34899 3.65086 3.79180 3.85586 3.93990 4.01770 4.08512 4.25229 4.39141 4.50536 4.77544 4.83841 4.90776 4.94821 5.02044 5.18324 5.23741 5.32915 5.33514 5.38042 5.46467 5.59653 5.69035 5.81975 5.98780 6.03695 6.06560 6.34961 6.40880 6.61018 6.68209 6.85327 6.96748 7.12842 7.24246 7.35483 7.36549 7.73477 8.48437 8.95337 9.52466 11.03672 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046712 B = 0.001738 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.278574 B =16103.079175 C =16497.055037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.096 4.096 11 C 0.045 3.955 12 N -0.511 5.511 13 C 0.036 3.964 14 C -0.147 4.147 15 C 0.139 3.861 16 H 0.106 0.894 17 N -0.690 5.690 18 C 0.447 3.553 19 C -0.234 4.234 20 C 0.029 3.971 21 C -0.170 4.170 22 N 0.047 4.953 23 O -0.173 6.173 24 O -0.172 6.172 25 C 0.236 3.764 26 N -0.534 5.534 27 C 0.030 3.970 28 H 0.263 0.737 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.184 0.816 43 H 0.052 0.948 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.129 -15.483 -2.195 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.082 4.082 12 N -0.235 5.235 13 C -0.092 4.092 14 C -0.186 4.186 15 C 0.033 3.967 16 H 0.123 0.877 17 N -0.317 5.317 18 C 0.209 3.791 19 C -0.260 4.260 20 C 0.004 3.996 21 C -0.260 4.260 22 N 0.562 4.438 23 O -0.385 6.385 24 O -0.385 6.385 25 C 0.072 3.928 26 N -0.252 5.252 27 C -0.098 4.098 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.250 0.750 40 H 0.175 0.825 41 H 0.180 0.820 42 H 0.200 0.800 43 H 0.070 0.930 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.463 -14.193 -1.796 26.632 hybrid contribution 0.645 0.698 -0.671 1.163 sum 23.108 -13.495 -2.467 26.873 Atomic orbital electron populations 1.69910 1.06293 1.26898 1.51074 1.25043 0.94738 0.99168 0.94598 0.86774 0.80337 0.83691 0.78424 1.20388 1.21334 1.19093 1.21122 0.89433 0.94474 1.50815 0.91008 1.19553 0.97294 0.92179 0.96077 1.21434 0.90439 0.99718 1.01798 1.22543 0.98645 0.86509 1.00530 1.64844 1.09386 1.18320 1.30950 1.22889 0.98616 0.96830 0.90884 1.22970 0.96347 1.01220 0.98075 1.22195 0.78059 0.99836 0.96585 0.87663 1.44931 1.12271 1.05523 1.69011 1.18770 0.87895 0.87067 0.85371 1.21547 1.03276 0.90125 1.11042 1.21216 0.90336 1.00317 0.87780 1.21868 0.95723 0.85624 1.22798 1.43293 1.00790 1.02304 0.97388 1.94540 1.72198 1.17653 1.54143 1.94538 1.00953 1.94012 1.48970 1.22458 0.99795 0.84135 0.86385 1.67639 1.07503 1.28398 1.21690 1.23397 0.90406 0.94079 1.01965 0.92715 0.96627 0.97360 0.92859 0.91817 0.90907 0.94847 0.92965 0.89410 0.90215 0.90725 0.74963 0.82543 0.81974 0.79957 0.93020 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.76 5.21 -26.73 -0.14 -1.90 16 11 C 0.05 0.64 4.76 -3.83 -0.02 0.62 16 12 N -0.51 -5.79 5.27 -230.45 -1.21 -7.01 16 13 C 0.04 0.36 5.79 -2.75 -0.02 0.35 16 14 C -0.15 -1.03 6.67 -25.37 -0.17 -1.20 16 15 C 0.14 0.87 2.96 -66.07 -0.20 0.68 16 16 H 0.11 0.60 6.64 -51.92 -0.34 0.26 16 17 N -0.69 -4.13 5.32 -52.13 -0.28 -4.40 16 18 C 0.45 3.14 7.65 -155.02 -1.19 1.95 16 19 C -0.23 -1.39 9.25 -39.22 -0.36 -1.75 16 20 C 0.03 0.19 9.66 -39.32 -0.38 -0.19 16 21 C -0.17 -1.39 6.87 -79.79 -0.55 -1.94 16 22 N 0.05 0.49 4.45 34.04 0.15 0.64 16 23 O -0.17 -1.95 18.52 -29.46 -0.55 -2.50 16 24 O -0.17 -1.90 18.46 -29.46 -0.54 -2.45 16 25 C 0.24 1.75 10.71 -17.57 -0.19 1.56 16 26 N -0.53 -4.23 10.39 -12.44 -0.13 -4.36 16 27 C 0.03 0.25 6.14 -1.90 -0.01 0.23 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.05 0.98 7.52 -51.93 -0.39 0.59 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.03 0.46 7.82 -51.93 -0.41 0.06 16 35 H 0.05 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.41 2.27 8.65 -40.82 -0.35 1.92 16 40 H 0.16 0.66 6.29 -52.48 -0.33 0.33 16 41 H 0.16 0.80 7.69 -52.49 -0.40 0.40 16 42 H 0.18 1.02 7.61 -52.49 -0.40 0.62 16 43 H 0.05 0.40 7.89 -51.93 -0.41 -0.01 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -31.82 366.89 -10.99 -42.81 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.31 Total: -3.08 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.76 Total: -15.07 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.69 Total: -41.83 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -1.09 Total: -4.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.82 -10.99 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072664978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.785 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds