Wall clock time and date at job start Tue Mar 31 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48497 * 109.46992 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47323 * 29.99618 * 3 2 1 6 6 H 1.48501 * 109.46930 * 149.99903 * 3 2 1 7 7 C 1.37877 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99851 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47234 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47286 * 179.97438 * 11 10 9 13 13 C 1.47899 * 111.00068 * 69.87031 * 12 11 10 14 14 C 1.53997 * 107.05889 * 145.84368 * 13 12 11 15 15 C 1.54593 * 105.13807 * 358.77516 * 14 13 12 16 16 H 1.09007 * 110.72450 * 96.40308 * 15 14 13 17 17 N 1.46506 * 110.72363 * 219.68019 * 15 14 13 18 18 C 1.38997 * 120.00293 * 273.54854 * 17 15 14 19 19 C 1.39142 * 119.70565 * 359.97438 * 18 17 15 20 20 C 1.38299 * 119.09767 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.50269 * 359.97438 * 20 19 18 22 22 N 1.48006 * 120.33092 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00139 * 0.02562 * 22 21 20 24 24 O 1.21804 * 119.99604 * 180.02562 * 22 21 20 25 25 C 1.38023 * 119.33317 * 0.02562 * 21 20 19 26 26 N 1.31968 * 120.85440 * 359.73658 * 25 21 20 27 27 C 1.48538 * 111.00123 * 187.26873 * 12 11 10 28 28 H 0.97000 * 120.00196 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47537 * 60.00228 * 9 7 2 30 30 H 1.08995 * 109.47171 * 299.99448 * 9 7 2 31 31 H 1.08991 * 109.47153 * 59.99739 * 10 9 7 32 32 H 1.09004 * 109.46763 * 299.99767 * 10 9 7 33 33 H 1.09001 * 109.47537 * 59.99765 * 11 10 9 34 34 H 1.09004 * 109.46840 * 299.99456 * 11 10 9 35 35 H 1.09004 * 109.91646 * 26.49394 * 13 12 11 36 36 H 1.08998 * 109.92144 * 265.19786 * 13 12 11 37 37 H 1.09004 * 110.30998 * 117.69119 * 14 13 12 38 38 H 1.08998 * 110.30811 * 239.85930 * 14 13 12 39 39 H 0.96998 * 119.99183 * 93.55209 * 17 15 14 40 40 H 1.08004 * 120.44884 * 359.95565 * 19 18 17 41 41 H 1.07996 * 120.74749 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.57147 * 180.02562 * 25 21 20 43 43 H 1.09007 * 110.66246 * 318.71191 * 27 12 11 44 44 H 1.08993 * 110.66698 * 81.83885 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0022 12 7 6.0412 -4.0215 0.0027 13 6 5.7709 -4.6797 -1.2938 14 6 6.9407 -5.6442 -1.5633 15 6 7.8961 -5.4660 -0.3611 16 1 7.7149 -6.2324 0.3926 17 7 9.2933 -5.4899 -0.8012 18 6 9.9620 -6.7020 -0.9262 19 6 9.2986 -7.8891 -0.6313 20 6 9.9758 -9.0880 -0.7605 21 6 11.2987 -9.0598 -1.1825 22 7 12.0615 -10.3189 -1.3352 23 8 11.5293 -11.3868 -1.0908 24 8 13.2215 -10.2870 -1.7053 25 6 11.8948 -7.8458 -1.4580 26 7 11.2227 -6.7173 -1.3303 27 6 7.5154 -4.0648 0.1794 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6585 -3.1501 -0.8891 32 1 3.6578 -3.1505 0.8908 33 1 5.9142 -2.1230 0.8927 34 1 5.9155 -2.1224 -0.8874 35 1 5.7160 -3.9323 -2.0854 36 1 4.8354 -5.2365 -1.2398 37 1 6.5804 -6.6719 -1.6112 38 1 7.4461 -5.3761 -2.4911 39 1 9.7516 -4.6598 -1.0052 40 1 8.2690 -7.8743 -0.3055 41 1 9.4867 -10.0250 -0.5390 42 1 12.9232 -7.8194 -1.7869 43 1 7.9963 -3.2823 -0.4077 44 1 7.7794 -3.9739 1.2329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072664978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:51 Heat of formation + Delta-G solvation = 18.592853 kcal Electronic energy + Delta-G solvation = -25409.457521 eV Core-core repulsion = 21557.066314 eV Total energy + Delta-G solvation = -3852.391206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.18881 -41.65454 -40.22309 -37.59654 -37.22081 -35.75135 -34.28332 -33.82905 -32.13716 -31.23265 -29.58101 -28.15094 -26.79867 -25.32881 -24.45772 -23.62756 -22.34982 -22.13537 -21.13356 -20.37998 -19.83565 -19.03638 -18.87954 -18.53461 -17.99558 -17.20257 -16.80175 -16.21614 -16.08881 -15.75747 -15.64532 -15.11979 -14.82640 -14.78245 -14.59067 -14.30698 -14.23264 -13.84019 -13.48121 -13.32226 -12.96291 -12.66115 -12.63460 -12.45629 -12.37004 -12.27870 -12.24169 -11.87247 -11.79794 -11.74025 -11.50242 -11.41069 -11.26909 -11.21595 -11.02203 -10.76984 -9.44985 -9.29723 -8.29787 -6.34205 -1.16890 -0.13579 0.32036 0.43710 1.35044 1.37413 1.49143 1.62179 2.34295 2.35557 3.00716 3.05611 3.17622 3.31597 3.36954 3.47471 3.53751 3.63581 3.96565 4.15420 4.21741 4.24963 4.32539 4.35910 4.43860 4.55210 4.60063 4.67782 4.75966 4.82662 4.87612 4.90904 4.93620 4.99356 5.06933 5.14483 5.32393 5.51352 5.53723 5.59571 5.66186 5.91894 5.97673 6.12735 6.29391 6.54522 6.61992 6.74571 7.30488 8.87108 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046712 B = 0.001738 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.278574 B =16103.079175 C =16497.055037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.087 4.087 11 C 0.058 3.942 12 N -0.522 5.522 13 C 0.032 3.968 14 C -0.138 4.138 15 C 0.150 3.850 16 H 0.119 0.881 17 N -0.681 5.681 18 C 0.443 3.557 19 C -0.227 4.227 20 C 0.029 3.971 21 C -0.181 4.181 22 N 0.050 4.950 23 O -0.196 6.196 24 O -0.191 6.191 25 C 0.238 3.762 26 N -0.547 5.547 27 C 0.031 3.969 28 H 0.266 0.734 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.417 0.583 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.195 0.805 43 H 0.059 0.941 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.203 -14.716 -2.020 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.125 4.125 11 C -0.070 4.070 12 N -0.247 5.247 13 C -0.096 4.096 14 C -0.177 4.177 15 C 0.044 3.956 16 H 0.137 0.863 17 N -0.308 5.308 18 C 0.204 3.796 19 C -0.252 4.252 20 C 0.004 3.996 21 C -0.272 4.272 22 N 0.560 4.440 23 O -0.405 6.405 24 O -0.401 6.401 25 C 0.074 3.926 26 N -0.266 5.266 27 C -0.098 4.098 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.255 0.745 40 H 0.196 0.804 41 H 0.194 0.806 42 H 0.212 0.788 43 H 0.077 0.923 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.568 -13.470 -1.623 28.065 hybrid contribution -0.122 0.456 -0.724 0.864 sum 24.446 -13.014 -2.347 27.793 Atomic orbital electron populations 1.70077 1.08403 1.28151 1.52725 1.26081 0.95651 1.03715 0.94153 0.85612 0.79585 0.77996 0.79158 1.19234 1.21130 1.16637 1.21524 0.92381 0.92968 1.50287 0.95288 1.19505 0.93699 0.95203 0.96480 1.21234 0.93925 0.96639 1.00728 1.22245 0.95153 0.88511 1.01119 1.64723 1.11811 1.16429 1.31700 1.22900 0.99593 0.97063 0.90045 1.22906 0.95211 1.01178 0.98393 1.22085 0.77928 0.99156 0.96402 0.86281 1.44864 1.11993 1.05490 1.68429 1.18955 0.87814 0.87645 0.85145 1.21744 1.04020 0.89274 1.10150 1.21445 0.89675 1.01317 0.87174 1.21997 0.96346 0.84609 1.24247 1.43582 1.00735 1.02869 0.96835 1.94522 1.72225 1.18703 1.55003 1.94520 1.01689 1.94256 1.49646 1.22659 1.00329 0.83782 0.85827 1.67661 1.08128 1.28422 1.22366 1.23441 0.88130 0.95412 1.02779 0.92552 0.96010 0.96444 0.93712 0.93236 0.90247 0.94317 0.94052 0.90578 0.88678 0.90525 0.74513 0.80409 0.80570 0.78832 0.92283 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 43.23 27.47 68.60 1.88 45.11 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 7 C -0.53 -30.44 9.66 25.60 0.25 -30.20 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.16 5.21 30.60 0.16 -3.00 16 11 C 0.06 1.51 4.76 86.30 0.41 1.92 16 12 N -0.52 -10.69 5.27 -883.02 -4.65 -15.34 16 13 C 0.03 0.59 5.79 86.45 0.50 1.09 16 14 C -0.14 -1.52 6.67 31.47 0.21 -1.31 16 15 C 0.15 1.36 2.96 46.19 0.14 1.49 16 16 H 0.12 0.84 6.64 -2.38 -0.02 0.83 16 17 N -0.68 -5.86 5.32 -318.83 -1.69 -7.55 16 18 C 0.44 4.90 7.65 133.07 1.02 5.92 16 19 C -0.23 -1.97 9.25 22.50 0.21 -1.76 16 20 C 0.03 0.32 9.66 22.44 0.22 0.54 16 21 C -0.18 -2.73 6.87 36.48 0.25 -2.47 16 22 N 0.05 1.02 4.45 -46.22 -0.21 0.82 16 23 O -0.20 -4.39 18.52 18.89 0.35 -4.04 16 24 O -0.19 -4.22 18.46 18.88 0.35 -3.87 16 25 C 0.24 3.17 10.71 84.62 0.91 4.08 16 26 N -0.55 -7.47 10.39 -193.27 -2.01 -9.48 16 27 C 0.03 0.40 6.14 86.65 0.53 0.93 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 30 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16 31 H 0.04 1.66 7.52 -2.39 -0.02 1.65 16 32 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 33 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 34 H 0.04 0.98 7.82 -2.38 -0.02 0.96 16 35 H 0.04 0.85 7.57 -2.39 -0.02 0.83 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 39 H 0.42 3.23 8.65 -92.71 -0.80 2.43 16 40 H 0.18 0.75 6.29 -2.91 -0.02 0.73 16 41 H 0.18 1.36 7.69 -2.91 -0.02 1.33 16 42 H 0.19 1.97 7.61 -2.91 -0.02 1.95 16 43 H 0.06 0.72 7.89 -2.38 -0.02 0.70 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.71 366.89 -0.13 -70.84 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.17 Total: 5.39 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 5.38 Total: -22.65 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -8.26 Total: -90.77 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.70 Total: -7.92 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -70.71 -0.13 -70.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072664978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.431 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds