Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47328 * 269.99997 * 3 2 1 5 5 H 1.48500 * 109.47061 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47671 * 149.99734 * 3 2 1 7 7 C 1.37882 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47365 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.47490 * 174.86016 * 11 10 9 13 13 C 1.47900 * 111.00252 * 175.70882 * 12 11 10 14 14 C 1.53990 * 107.05718 * 214.15422 * 13 12 11 15 15 C 1.54596 * 105.14039 * 1.22534 * 14 13 12 16 16 H 1.09004 * 110.71825 * 263.59980 * 15 14 13 17 17 N 1.46500 * 110.72318 * 140.49449 * 15 14 13 18 18 C 1.39002 * 119.99990 * 86.45609 * 17 15 14 19 19 C 1.39142 * 119.70613 * 359.97438 * 18 17 15 20 20 C 1.38294 * 119.09684 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.50682 * 0.02562 * 20 19 18 22 22 N 1.48002 * 120.33616 * 179.97438 * 21 20 19 23 23 O 1.21797 * 119.99936 * 0.02562 * 22 21 20 24 24 O 1.21803 * 120.00043 * 179.97438 * 22 21 20 25 25 C 1.38021 * 119.32820 * 359.97438 * 21 20 19 26 26 N 1.31970 * 120.85654 * 359.74300 * 25 21 20 27 27 C 1.48532 * 111.00143 * 58.30891 * 12 11 10 28 28 H 0.97000 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46611 * 59.99938 * 9 7 2 30 30 H 1.09001 * 109.47234 * 300.00361 * 9 7 2 31 31 H 1.09002 * 109.47278 * 59.99752 * 10 9 7 32 32 H 1.09001 * 109.47085 * 300.00258 * 10 9 7 33 33 H 1.09007 * 109.47258 * 294.85536 * 11 10 9 34 34 H 1.08996 * 109.47213 * 54.85612 * 11 10 9 35 35 H 1.09001 * 109.91266 * 333.50744 * 13 12 11 36 36 H 1.09000 * 109.91338 * 94.79842 * 13 12 11 37 37 H 1.08997 * 110.30670 * 120.14112 * 14 13 12 38 38 H 1.09002 * 110.30907 * 242.20778 * 14 13 12 39 39 H 0.96994 * 119.99867 * 266.44826 * 17 15 14 40 40 H 1.07997 * 120.45199 * 359.96394 * 19 18 17 41 41 H 1.07996 * 120.74730 * 179.97438 * 20 19 18 42 42 H 1.07998 * 119.57209 * 180.02562 * 25 21 20 43 43 H 1.09005 * 110.66849 * 278.16212 * 27 12 11 44 44 H 1.09003 * 110.66297 * 41.29073 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 7 6.0413 -4.0159 0.1243 13 6 7.5161 -4.0658 0.0251 14 6 7.8769 -5.3850 -0.6825 15 6 6.5212 -6.0557 -1.0020 16 1 6.2610 -6.7844 -0.2341 17 7 6.5539 -6.6872 -2.3235 18 6 7.0281 -7.9865 -2.4614 19 6 7.4708 -8.6816 -1.3402 20 6 7.9396 -9.9738 -1.4918 21 6 7.9507 -10.5299 -2.7644 22 7 8.4443 -11.9095 -2.9730 23 8 8.8432 -12.5633 -2.0260 24 8 8.4509 -12.3913 -4.0917 25 6 7.4966 -9.7830 -3.8325 26 7 7.0495 -8.5537 -3.6575 27 6 5.5320 -4.8635 -0.9841 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6796 0.8895 30 1 3.8746 -0.6808 -0.8905 31 1 3.6579 -3.1506 -0.8896 32 1 3.6586 -3.1501 0.8903 33 1 5.9149 -2.2046 -0.9324 34 1 5.9148 -2.0449 0.8404 35 1 7.8777 -3.2198 -0.5595 36 1 7.9561 -4.0467 1.0222 37 1 8.4252 -5.1830 -1.6026 38 1 8.4682 -6.0192 -0.0219 39 1 6.2445 -6.1987 -3.1022 40 1 7.4487 -8.2182 -0.3650 41 1 8.2899 -10.5375 -0.6399 42 1 7.5031 -10.2117 -4.8237 43 1 4.5194 -5.2068 -0.7719 44 1 5.5655 -4.3216 -1.9293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072664979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = 38.947838 kcal Electronic energy + Delta-G solvation = -25556.930050 eV Core-core repulsion = 21705.421502 eV Total energy + Delta-G solvation = -3851.508548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44281 -41.04179 -39.49836 -36.78709 -36.37444 -34.30510 -33.47211 -32.37118 -31.29308 -30.11055 -28.79838 -26.75508 -26.11308 -24.72374 -23.28484 -22.76281 -21.41891 -21.01371 -20.01039 -19.67755 -19.07485 -18.37817 -17.76892 -17.47043 -16.79286 -16.43056 -15.94941 -15.43172 -15.14760 -14.58299 -14.41644 -14.29530 -14.13458 -13.99171 -13.56448 -13.33219 -12.97346 -12.70856 -12.42717 -11.84948 -11.83780 -11.81824 -11.63618 -11.53946 -11.38062 -11.26914 -11.19667 -10.95923 -10.81029 -10.68179 -10.42478 -10.07204 -9.82864 -9.69432 -9.26297 -8.73043 -8.60891 -8.57685 -6.10814 -4.09290 -0.44492 0.39839 1.04167 1.13428 2.21902 2.92544 3.24067 3.32225 3.34677 3.70137 3.81797 3.89813 3.98962 4.05014 4.12725 4.26732 4.38423 4.52773 4.78945 4.84669 4.90132 4.99399 5.05347 5.22576 5.25510 5.33770 5.38564 5.39811 5.49285 5.53746 5.68152 5.72733 5.96447 6.07826 6.11342 6.30375 6.41294 6.64800 6.67461 6.84313 6.95159 7.18807 7.20891 7.33617 7.40315 7.72149 8.46817 8.93831 9.51360 11.02603 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.001887 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.096338 B =14835.815449 C =15296.225209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.045 3.955 12 N -0.511 5.511 13 C 0.034 3.966 14 C -0.146 4.146 15 C 0.137 3.863 16 H 0.105 0.895 17 N -0.689 5.689 18 C 0.448 3.552 19 C -0.235 4.235 20 C 0.029 3.971 21 C -0.171 4.171 22 N 0.048 4.952 23 O -0.174 6.174 24 O -0.172 6.172 25 C 0.236 3.764 26 N -0.533 5.533 27 C 0.033 3.967 28 H 0.263 0.737 29 H 0.017 0.983 30 H 0.008 0.992 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.184 0.816 43 H 0.098 0.902 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.708 -16.973 -3.647 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.082 4.082 12 N -0.235 5.235 13 C -0.094 4.094 14 C -0.185 4.185 15 C 0.032 3.968 16 H 0.123 0.877 17 N -0.316 5.316 18 C 0.210 3.790 19 C -0.261 4.261 20 C 0.003 3.997 21 C -0.261 4.261 22 N 0.563 4.437 23 O -0.386 6.386 24 O -0.385 6.385 25 C 0.073 3.927 26 N -0.251 5.251 27 C -0.095 4.095 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.252 0.748 40 H 0.174 0.826 41 H 0.180 0.820 42 H 0.200 0.800 43 H 0.116 0.884 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.814 -15.744 -3.497 24.781 hybrid contribution 0.896 0.755 -0.473 1.264 sum 19.710 -14.989 -3.970 25.078 Atomic orbital electron populations 1.69909 1.06300 1.26929 1.51007 1.25048 0.94749 0.99208 0.94576 0.86767 0.80346 0.83647 0.78432 1.20385 1.21328 1.19056 1.21112 0.89413 0.94449 1.50913 0.91062 1.19544 0.97289 0.92080 0.96160 1.21507 0.90632 1.00046 1.01626 1.22553 0.98336 0.87080 1.00267 1.64861 1.05441 1.11655 1.41592 1.22873 0.89592 0.96110 1.00870 1.22935 0.97010 0.97258 1.01308 1.22213 0.96117 0.95385 0.83106 0.87713 1.44933 1.64899 1.10710 1.11041 1.18775 0.85267 0.85855 0.89144 1.21530 1.09069 0.95254 1.00217 1.21198 0.89161 0.93670 0.95640 1.21862 1.19771 0.86200 0.98289 1.43290 0.97793 1.02298 1.00359 1.94534 1.49468 1.60336 1.34310 1.94539 1.60070 1.73435 1.10441 1.22466 0.84630 0.86952 0.98661 1.67647 1.22922 1.11337 1.23226 1.23406 0.99122 0.92494 0.94518 0.92697 0.96520 0.97332 0.92987 0.91707 0.94963 0.90504 0.93368 0.89857 0.90735 0.90306 0.74819 0.82608 0.82036 0.79950 0.88374 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 10 C -0.10 -1.81 4.83 -26.74 -0.13 -1.94 16 11 C 0.05 0.64 4.84 -3.82 -0.02 0.62 16 12 N -0.51 -5.81 5.35 -230.45 -1.23 -7.04 16 13 C 0.03 0.29 6.70 -2.76 -0.02 0.28 16 14 C -0.15 -0.96 6.67 -25.38 -0.17 -1.13 16 15 C 0.14 0.96 2.96 -66.07 -0.20 0.76 16 16 H 0.11 0.67 6.63 -51.93 -0.34 0.33 16 17 N -0.69 -4.75 5.32 -52.13 -0.28 -5.02 16 18 C 0.45 3.44 7.65 -155.02 -1.19 2.26 16 19 C -0.24 -1.49 9.24 -39.23 -0.36 -1.86 16 20 C 0.03 0.20 9.66 -39.32 -0.38 -0.18 16 21 C -0.17 -1.47 6.87 -79.80 -0.55 -2.02 16 22 N 0.05 0.51 4.45 34.04 0.15 0.67 16 23 O -0.17 -2.02 18.52 -29.46 -0.55 -2.56 16 24 O -0.17 -1.97 18.46 -29.46 -0.54 -2.52 16 25 C 0.24 1.90 10.71 -17.57 -0.19 1.71 16 26 N -0.53 -4.62 10.39 -12.44 -0.13 -4.75 16 27 C 0.03 0.32 4.97 -1.90 -0.01 0.31 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 31 H 0.05 0.93 7.18 -51.93 -0.37 0.55 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.44 7.97 -51.92 -0.41 0.03 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.41 2.78 8.66 -40.82 -0.35 2.43 16 40 H 0.16 0.70 6.29 -52.49 -0.33 0.37 16 41 H 0.16 0.84 7.69 -52.49 -0.40 0.43 16 42 H 0.18 1.13 7.61 -52.49 -0.40 0.73 16 43 H 0.10 1.05 7.77 -51.93 -0.40 0.64 16 44 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -31.70 365.99 -11.00 -42.69 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.29 Total: -2.27 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.75 Total: -14.61 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.71 Total: -42.80 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -1.09 Total: -5.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.70 -11.00 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072664979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.642 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds