Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47328 * 269.99997 * 3 2 1 5 5 H 1.48500 * 109.47061 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47671 * 149.99734 * 3 2 1 7 7 C 1.37882 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47365 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.47490 * 174.86016 * 11 10 9 13 13 C 1.47900 * 111.00252 * 175.70882 * 12 11 10 14 14 C 1.53990 * 107.05718 * 214.15422 * 13 12 11 15 15 C 1.54596 * 105.14039 * 1.22534 * 14 13 12 16 16 H 1.09004 * 110.71825 * 263.59980 * 15 14 13 17 17 N 1.46500 * 110.72318 * 140.49449 * 15 14 13 18 18 C 1.39002 * 119.99990 * 86.45609 * 17 15 14 19 19 C 1.39142 * 119.70613 * 359.97438 * 18 17 15 20 20 C 1.38294 * 119.09684 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.50682 * 0.02562 * 20 19 18 22 22 N 1.48002 * 120.33616 * 179.97438 * 21 20 19 23 23 O 1.21797 * 119.99936 * 0.02562 * 22 21 20 24 24 O 1.21803 * 120.00043 * 179.97438 * 22 21 20 25 25 C 1.38021 * 119.32820 * 359.97438 * 21 20 19 26 26 N 1.31970 * 120.85654 * 359.74300 * 25 21 20 27 27 C 1.48532 * 111.00143 * 58.30891 * 12 11 10 28 28 H 0.97000 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46611 * 59.99938 * 9 7 2 30 30 H 1.09001 * 109.47234 * 300.00361 * 9 7 2 31 31 H 1.09002 * 109.47278 * 59.99752 * 10 9 7 32 32 H 1.09001 * 109.47085 * 300.00258 * 10 9 7 33 33 H 1.09007 * 109.47258 * 294.85536 * 11 10 9 34 34 H 1.08996 * 109.47213 * 54.85612 * 11 10 9 35 35 H 1.09001 * 109.91266 * 333.50744 * 13 12 11 36 36 H 1.09000 * 109.91338 * 94.79842 * 13 12 11 37 37 H 1.08997 * 110.30670 * 120.14112 * 14 13 12 38 38 H 1.09002 * 110.30907 * 242.20778 * 14 13 12 39 39 H 0.96994 * 119.99867 * 266.44826 * 17 15 14 40 40 H 1.07997 * 120.45199 * 359.96394 * 19 18 17 41 41 H 1.07996 * 120.74730 * 179.97438 * 20 19 18 42 42 H 1.07998 * 119.57209 * 180.02562 * 25 21 20 43 43 H 1.09005 * 110.66849 * 278.16212 * 27 12 11 44 44 H 1.09003 * 110.66297 * 41.29073 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 7 6.0413 -4.0159 0.1243 13 6 7.5161 -4.0658 0.0251 14 6 7.8769 -5.3850 -0.6825 15 6 6.5212 -6.0557 -1.0020 16 1 6.2610 -6.7844 -0.2341 17 7 6.5539 -6.6872 -2.3235 18 6 7.0281 -7.9865 -2.4614 19 6 7.4708 -8.6816 -1.3402 20 6 7.9396 -9.9738 -1.4918 21 6 7.9507 -10.5299 -2.7644 22 7 8.4443 -11.9095 -2.9730 23 8 8.8432 -12.5633 -2.0260 24 8 8.4509 -12.3913 -4.0917 25 6 7.4966 -9.7830 -3.8325 26 7 7.0495 -8.5537 -3.6575 27 6 5.5320 -4.8635 -0.9841 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6796 0.8895 30 1 3.8746 -0.6808 -0.8905 31 1 3.6579 -3.1506 -0.8896 32 1 3.6586 -3.1501 0.8903 33 1 5.9149 -2.2046 -0.9324 34 1 5.9148 -2.0449 0.8404 35 1 7.8777 -3.2198 -0.5595 36 1 7.9561 -4.0467 1.0222 37 1 8.4252 -5.1830 -1.6026 38 1 8.4682 -6.0192 -0.0219 39 1 6.2445 -6.1987 -3.1022 40 1 7.4487 -8.2182 -0.3650 41 1 8.2899 -10.5375 -0.6399 42 1 7.5031 -10.2117 -4.8237 43 1 4.5194 -5.2068 -0.7719 44 1 5.5655 -4.3216 -1.9293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072664979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = 18.613626 kcal Electronic energy + Delta-G solvation = -25557.811807 eV Core-core repulsion = 21705.421502 eV Total energy + Delta-G solvation = -3852.390306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.19110 -41.65912 -40.24451 -37.59737 -37.20071 -35.77604 -34.29011 -33.85746 -32.16630 -31.16582 -29.49955 -28.17471 -26.93594 -25.34779 -24.43446 -23.61222 -22.48953 -21.75769 -21.33228 -20.37977 -19.83552 -19.04217 -18.84591 -18.53730 -18.07067 -17.15282 -16.75507 -16.25717 -16.21011 -15.75458 -15.52333 -15.14371 -14.89706 -14.74762 -14.61206 -14.26936 -14.20518 -13.91304 -13.44431 -13.30491 -12.95844 -12.74758 -12.66057 -12.43550 -12.33265 -12.27209 -12.24133 -11.86519 -11.81494 -11.72595 -11.54222 -11.39338 -11.26287 -11.22072 -11.01920 -10.77533 -9.44519 -9.29987 -8.30380 -6.34735 -1.16650 -0.13222 0.32238 0.43498 1.34787 1.37210 1.48932 1.62696 2.34363 2.35139 3.01077 3.05079 3.17203 3.31658 3.37650 3.47674 3.53724 3.64563 3.96371 4.15113 4.18741 4.25678 4.33955 4.36311 4.41412 4.54950 4.60777 4.65515 4.75733 4.81917 4.86841 4.92113 4.93441 5.02346 5.05688 5.15958 5.32615 5.49510 5.53717 5.57516 5.65389 5.89308 5.99135 6.11234 6.28236 6.54809 6.61667 6.73933 7.29981 8.86444 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.001887 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.096338 B =14835.815449 C =15296.225209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.532 4.532 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.090 4.090 11 C 0.057 3.943 12 N -0.521 5.521 13 C 0.033 3.967 14 C -0.136 4.136 15 C 0.148 3.852 16 H 0.117 0.883 17 N -0.684 5.684 18 C 0.442 3.558 19 C -0.226 4.226 20 C 0.031 3.969 21 C -0.181 4.181 22 N 0.051 4.949 23 O -0.191 6.191 24 O -0.194 6.194 25 C 0.237 3.763 26 N -0.549 5.549 27 C 0.029 3.971 28 H 0.266 0.734 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.415 0.585 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.194 0.806 43 H 0.082 0.918 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.305 -16.216 -3.106 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.128 4.128 11 C -0.071 4.071 12 N -0.245 5.245 13 C -0.095 4.095 14 C -0.175 4.175 15 C 0.043 3.957 16 H 0.135 0.865 17 N -0.310 5.310 18 C 0.203 3.797 19 C -0.251 4.251 20 C 0.005 3.995 21 C -0.272 4.272 22 N 0.560 4.440 23 O -0.402 6.402 24 O -0.403 6.403 25 C 0.073 3.927 26 N -0.268 5.268 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.252 0.748 40 H 0.198 0.802 41 H 0.197 0.803 42 H 0.211 0.789 43 H 0.101 0.899 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.441 -15.030 -2.964 26.352 hybrid contribution -0.023 0.515 -0.632 0.816 sum 21.418 -14.515 -3.596 26.122 Atomic orbital electron populations 1.70075 1.08394 1.28155 1.52729 1.26087 0.95660 1.03745 0.94194 0.85612 0.79576 0.78013 0.79158 1.19224 1.21160 1.16658 1.21512 0.92333 0.92945 1.50246 0.95248 1.19504 0.93709 0.95199 0.96514 1.21304 0.93873 0.96890 1.00768 1.22270 0.94989 0.89088 1.00714 1.64777 1.07439 1.09942 1.42387 1.22953 0.87475 0.97325 1.01753 1.22896 0.96653 0.96346 1.01638 1.22114 0.95631 0.94650 0.83335 0.86482 1.44915 1.64523 1.10507 1.11085 1.18977 0.85273 0.86006 0.89406 1.21743 1.07884 0.94731 1.00722 1.21452 0.88653 0.93933 0.95420 1.21992 1.20770 0.85026 0.99437 1.43565 0.97404 1.03014 0.99989 1.94514 1.50169 1.61168 1.34312 1.94525 1.60882 1.74194 1.10725 1.22646 0.84129 0.86761 0.99147 1.67652 1.23593 1.11558 1.24044 1.23388 0.99207 0.93462 0.93914 0.92555 0.96047 0.96405 0.93455 0.93108 0.94342 0.90277 0.93409 0.88966 0.90508 0.88091 0.74767 0.80199 0.80313 0.78949 0.89914 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 3 Si 0.95 43.24 27.47 68.60 1.88 45.12 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.53 -30.20 9.66 25.60 0.25 -29.96 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.09 -3.22 4.83 30.59 0.15 -3.07 16 11 C 0.06 1.51 4.84 86.30 0.42 1.92 16 12 N -0.52 -10.69 5.35 -883.02 -4.73 -15.42 16 13 C 0.03 0.46 6.70 86.45 0.58 1.04 16 14 C -0.14 -1.28 6.67 31.47 0.21 -1.07 16 15 C 0.15 1.64 2.96 46.19 0.14 1.77 16 16 H 0.12 1.07 6.63 -2.38 -0.02 1.05 16 17 N -0.68 -7.81 5.32 -318.85 -1.70 -9.51 16 18 C 0.44 5.75 7.65 133.07 1.02 6.77 16 19 C -0.23 -2.17 9.24 22.50 0.21 -1.96 16 20 C 0.03 0.35 9.66 22.44 0.22 0.57 16 21 C -0.18 -2.91 6.87 36.48 0.25 -2.66 16 22 N 0.05 1.07 4.45 -46.23 -0.21 0.86 16 23 O -0.19 -4.37 18.52 18.89 0.35 -4.02 16 24 O -0.19 -4.48 18.46 18.88 0.35 -4.13 16 25 C 0.24 3.55 10.71 84.62 0.91 4.46 16 26 N -0.55 -8.70 10.39 -193.27 -2.01 -10.70 16 27 C 0.03 0.51 4.97 86.65 0.43 0.94 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 30 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 31 H 0.05 1.70 7.18 -2.39 -0.02 1.68 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 0.96 7.97 -2.38 -0.02 0.94 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 0.70 7.67 -2.39 -0.02 0.68 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 0.75 8.05 -2.39 -0.02 0.73 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.41 4.83 8.66 -92.71 -0.80 4.03 16 40 H 0.18 0.82 6.29 -2.91 -0.02 0.80 16 41 H 0.18 1.38 7.69 -2.91 -0.02 1.36 16 42 H 0.19 2.30 7.61 -2.91 -0.02 2.28 16 43 H 0.08 1.72 7.77 -2.38 -0.02 1.70 16 44 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 Total: -1.00 -70.32 365.99 -0.24 -70.55 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.17 Total: 7.58 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.35 Total: -21.18 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -8.34 Total: -93.93 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.70 Total: -8.15 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -70.32 -0.24 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072664979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds