Wall clock time and date at job start Tue Mar 31 2020 12:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 116.99483 * 2 1 4 4 O 1.21514 * 120.00266 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99882 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62771 * 179.97438 * 5 3 2 7 7 C 1.53192 * 108.89004 * 233.51277 * 6 5 3 8 8 C 1.53069 * 109.29744 * 305.58250 * 7 6 5 9 9 N 1.46500 * 109.45402 * 181.24376 * 8 7 6 10 10 C 1.39787 * 119.99783 * 84.78595 * 9 8 7 11 11 C 1.38942 * 120.00741 * 359.73215 * 10 9 8 12 12 C 1.38013 * 119.99222 * 179.72211 * 11 10 9 13 13 C 1.38898 * 120.00776 * 0.54437 * 12 11 10 14 14 O 1.35795 * 119.99837 * 179.70245 * 13 12 11 15 15 C 1.34811 * 117.00193 * 174.48541 * 14 13 12 16 16 H 1.07995 * 119.99866 * 5.05485 * 15 14 13 17 17 C 1.38617 * 119.99919 * 185.06056 * 15 14 13 18 18 N 1.31584 * 120.00119 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46860 * 120.00071 * 19 17 15 22 22 H 1.48506 * 109.47007 * 239.99435 * 19 17 15 23 23 C 1.38905 * 120.00788 * 359.72806 * 13 12 11 24 24 C 1.38004 * 120.00876 * 0.02562 * 23 13 12 25 25 C 1.53041 * 109.65895 * 61.15164 * 8 7 6 26 26 C 1.46927 * 120.62821 * 359.97438 * 5 3 2 27 27 H 1.09005 * 109.47462 * 299.99431 * 1 2 3 28 28 H 1.08998 * 109.47623 * 60.00286 * 1 2 3 29 29 H 1.09002 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.58984 * 353.37908 * 6 5 3 31 31 H 1.09008 * 109.58022 * 113.65732 * 6 5 3 32 32 H 1.08999 * 109.49560 * 65.39315 * 7 6 5 33 33 H 1.09004 * 109.49264 * 185.48705 * 7 6 5 34 34 H 1.09006 * 109.33579 * 301.13758 * 8 7 6 35 35 H 0.96998 * 120.00130 * 264.78847 * 9 8 7 36 36 H 1.08000 * 120.00572 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.99748 * 180.25718 * 12 11 10 38 38 H 0.97001 * 120.00142 * 180.02562 * 18 17 15 39 39 H 1.07998 * 119.99398 * 179.97438 * 23 13 12 40 40 H 1.07995 * 120.00480 * 179.97438 * 24 23 13 41 41 H 1.09002 * 109.49796 * 178.74530 * 25 8 7 42 42 H 1.09003 * 109.49525 * 58.65542 * 25 8 7 43 43 H 1.09001 * 109.58404 * 246.20198 * 26 5 3 44 44 H 1.08995 * 109.58569 * 6.48328 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2188 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0903 2.5721 -0.0011 7 6 5.0835 2.6116 -1.1668 8 6 6.0232 1.4071 -1.0718 9 7 6.9935 1.4575 -2.1682 10 6 8.1608 2.2148 -2.0342 11 6 8.3983 2.9241 -0.8633 12 6 9.5536 3.6671 -0.7291 13 6 10.4735 3.7148 -1.7687 14 8 11.6074 4.4507 -1.6387 15 6 12.5109 4.3641 -2.6355 16 1 12.2815 3.7953 -3.5243 17 6 13.7345 5.0051 -2.5194 18 7 14.0139 5.6985 -1.4366 19 14 14.9868 4.8844 -3.9003 20 1 14.4337 4.0522 -4.9988 21 1 15.2902 6.2444 -4.4135 22 1 16.2323 4.2602 -3.3859 23 6 10.2336 3.0103 -2.9415 24 6 9.0809 2.2631 -3.0744 25 6 5.2123 0.1127 -1.1676 26 6 4.2229 0.0470 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.3560 3.3689 -0.1194 31 1 4.6252 2.7049 0.9394 32 1 4.5389 2.5723 -2.1102 33 1 5.6637 3.5332 -1.1192 34 1 6.5508 1.4353 -0.1183 35 1 6.8259 0.9655 -2.9872 36 1 7.6809 2.8909 -0.0568 37 1 9.7403 4.2151 0.1826 38 1 14.8700 6.1473 -1.3555 39 1 10.9488 3.0479 -3.7499 40 1 8.8943 1.7158 -3.9864 41 1 5.8861 -0.7429 -1.1221 42 1 4.6648 0.0954 -2.1100 43 1 4.7706 -0.0275 0.9389 44 1 3.5757 -0.8223 -0.1160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089155222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:18 Heat of formation + Delta-G solvation = -70.249752 kcal Electronic energy + Delta-G solvation = -26198.672709 eV Core-core repulsion = 22310.136247 eV Total energy + Delta-G solvation = -3888.536462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95574 -39.34724 -38.51608 -36.99452 -36.37586 -34.55843 -32.21339 -31.53177 -31.28077 -30.13101 -28.07761 -27.16728 -25.37374 -24.36528 -23.69771 -22.34702 -21.50260 -20.65270 -20.06259 -18.51318 -17.77348 -17.37127 -17.11821 -16.84280 -16.20750 -15.55722 -15.17478 -14.80303 -14.54165 -14.44890 -14.16504 -14.02468 -13.84686 -13.48116 -13.36248 -13.09622 -12.75296 -12.66077 -12.45450 -12.40751 -12.15381 -11.92006 -11.60088 -11.53775 -11.25968 -11.12440 -11.10342 -10.98714 -10.80069 -10.65982 -10.52323 -10.35028 -9.24014 -9.21638 -9.11750 -8.46079 -8.18359 -6.42087 -6.32959 -3.90194 1.82589 2.19017 2.50144 2.55546 3.17626 3.19076 3.24257 3.53541 3.70447 4.05483 4.40966 4.57814 4.68583 4.73050 4.79358 4.86355 4.90242 4.95578 5.09316 5.15825 5.19660 5.25951 5.36099 5.44604 5.47779 5.57089 5.64973 5.65104 5.74845 5.80593 5.96093 6.06472 6.17039 6.21363 6.25468 6.52885 6.85196 6.89874 6.98058 7.12310 7.31997 7.44044 7.62981 7.94947 7.95749 8.11493 8.21373 9.13118 9.87472 10.85795 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043284 B = 0.002063 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.731980 B =13572.268969 C =13877.001729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.574 6.574 5 N -0.592 5.592 6 C 0.127 3.873 7 C -0.152 4.152 8 C 0.161 3.839 9 N -0.755 5.755 10 C 0.124 3.876 11 C -0.146 4.146 12 C -0.151 4.151 13 C 0.114 3.886 14 O -0.188 6.188 15 C -0.386 4.386 16 H 0.089 0.911 17 C 0.035 3.965 18 N -0.868 5.868 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.277 1.277 23 C -0.190 4.190 24 C -0.141 4.141 25 C -0.141 4.141 26 C 0.116 3.884 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.390 0.610 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.385 -13.499 1.879 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.333 5.333 6 C 0.006 3.994 7 C -0.192 4.192 8 C 0.054 3.946 9 N -0.389 5.389 10 C 0.026 3.974 11 C -0.168 4.168 12 C -0.171 4.171 13 C 0.061 3.939 14 O -0.093 6.093 15 C -0.463 4.463 16 H 0.106 0.894 17 C -0.167 4.167 18 N -0.505 5.505 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.210 4.210 24 C -0.163 4.163 25 C -0.180 4.180 26 C -0.007 4.007 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.223 0.777 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.441 -12.885 2.310 25.980 hybrid contribution 0.458 -0.240 -1.148 1.259 sum -21.983 -13.125 1.162 25.630 Atomic orbital electron populations 1.23192 0.74475 1.03425 1.02753 1.86225 1.24114 1.31118 1.87130 1.18050 0.83208 0.82111 0.76340 1.90997 1.64214 1.34943 1.56137 1.46990 1.01800 1.08810 1.75711 1.21713 0.95283 0.83299 0.99108 1.22531 0.97412 1.00840 0.98408 1.20647 0.88842 0.93025 0.92082 1.44242 1.20242 1.56361 1.18049 1.17375 0.88011 0.96869 0.95136 1.20188 0.98368 1.01570 0.96667 1.20035 0.94573 1.04016 0.98438 1.19251 0.89082 0.92346 0.93207 1.83986 1.23869 1.57085 1.44401 1.21277 0.94614 1.33570 0.96834 0.89401 1.25220 0.97086 0.96383 0.98050 1.70058 1.23156 1.30890 1.26397 0.85698 0.79959 0.78283 0.79754 1.19274 1.20322 1.20319 1.20995 0.98767 1.02146 0.99091 1.20233 0.95133 1.03378 0.97604 1.22188 0.98055 0.98683 0.99101 1.21706 0.93554 0.86582 0.98888 0.91862 0.91877 0.87986 0.88474 0.90615 0.91359 0.89385 0.90395 0.77660 0.87083 0.86541 0.92350 0.85544 0.87689 0.89711 0.91122 0.90660 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.45 9.20 -40.32 -0.37 -3.82 16 3 C 0.65 7.36 8.43 54.06 0.46 7.82 16 4 O -0.57 -8.20 15.55 -19.28 -0.30 -8.50 16 5 N -0.59 -5.62 2.97 -178.58 -0.53 -6.16 16 6 C 0.13 1.20 6.43 -3.71 -0.02 1.17 16 7 C -0.15 -1.51 5.58 -26.60 -0.15 -1.66 16 8 C 0.16 1.58 2.11 -67.87 -0.14 1.43 16 9 N -0.75 -9.13 5.25 -52.06 -0.27 -9.41 16 10 C 0.12 2.01 6.64 -83.70 -0.56 1.45 16 11 C -0.15 -2.50 8.81 -39.40 -0.35 -2.84 16 12 C -0.15 -3.13 9.98 -39.42 -0.39 -3.53 16 13 C 0.11 2.74 6.65 -39.09 -0.26 2.48 16 14 O -0.19 -5.43 9.76 -0.04 0.00 -5.43 16 15 C -0.39 -10.93 9.48 30.87 0.29 -10.63 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 17 C 0.04 0.99 5.49 -17.52 -0.10 0.90 16 18 N -0.87 -25.90 13.67 55.48 0.76 -25.15 16 19 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.19 -4.10 9.16 -39.42 -0.36 -4.46 16 24 C -0.14 -2.53 9.89 -39.40 -0.39 -2.92 16 25 C -0.14 -1.06 5.55 -26.63 -0.15 -1.21 16 26 C 0.12 0.83 6.45 -3.73 -0.02 0.80 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 1.03 7.00 -51.93 -0.36 0.66 16 31 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 34 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 35 H 0.39 4.19 8.61 -40.82 -0.35 3.84 16 36 H 0.11 1.59 6.09 -52.49 -0.32 1.27 16 37 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.61 6.92 -51.93 -0.36 0.25 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -33.81 361.66 -7.43 -41.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.06 Total: 5.71 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.07 Total: -9.77 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.05 Total: -40.71 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.67 Total: -17.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.81 -7.43 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089155222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.019 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds