Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 116.99483 * 2 1 4 4 O 1.21514 * 120.00266 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99882 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62771 * 179.97438 * 5 3 2 7 7 C 1.53192 * 108.89004 * 233.51277 * 6 5 3 8 8 C 1.53069 * 109.29744 * 305.58250 * 7 6 5 9 9 N 1.46500 * 109.45402 * 181.24376 * 8 7 6 10 10 C 1.39787 * 119.99783 * 84.78595 * 9 8 7 11 11 C 1.38942 * 120.00741 * 359.73215 * 10 9 8 12 12 C 1.38013 * 119.99222 * 179.72211 * 11 10 9 13 13 C 1.38898 * 120.00776 * 0.54437 * 12 11 10 14 14 O 1.35795 * 119.99837 * 179.70245 * 13 12 11 15 15 C 1.34811 * 117.00193 * 174.48541 * 14 13 12 16 16 H 1.07995 * 119.99866 * 5.05485 * 15 14 13 17 17 C 1.38617 * 119.99919 * 185.06056 * 15 14 13 18 18 N 1.31584 * 120.00119 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46860 * 120.00071 * 19 17 15 22 22 H 1.48506 * 109.47007 * 239.99435 * 19 17 15 23 23 C 1.38905 * 120.00788 * 359.72806 * 13 12 11 24 24 C 1.38004 * 120.00876 * 0.02562 * 23 13 12 25 25 C 1.53041 * 109.65895 * 61.15164 * 8 7 6 26 26 C 1.46927 * 120.62821 * 359.97438 * 5 3 2 27 27 H 1.09005 * 109.47462 * 299.99431 * 1 2 3 28 28 H 1.08998 * 109.47623 * 60.00286 * 1 2 3 29 29 H 1.09002 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.58984 * 353.37908 * 6 5 3 31 31 H 1.09008 * 109.58022 * 113.65732 * 6 5 3 32 32 H 1.08999 * 109.49560 * 65.39315 * 7 6 5 33 33 H 1.09004 * 109.49264 * 185.48705 * 7 6 5 34 34 H 1.09006 * 109.33579 * 301.13758 * 8 7 6 35 35 H 0.96998 * 120.00130 * 264.78847 * 9 8 7 36 36 H 1.08000 * 120.00572 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.99748 * 180.25718 * 12 11 10 38 38 H 0.97001 * 120.00142 * 180.02562 * 18 17 15 39 39 H 1.07998 * 119.99398 * 179.97438 * 23 13 12 40 40 H 1.07995 * 120.00480 * 179.97438 * 24 23 13 41 41 H 1.09002 * 109.49796 * 178.74530 * 25 8 7 42 42 H 1.09003 * 109.49525 * 58.65542 * 25 8 7 43 43 H 1.09001 * 109.58404 * 246.20198 * 26 5 3 44 44 H 1.08995 * 109.58569 * 6.48328 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2188 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0903 2.5721 -0.0011 7 6 5.0835 2.6116 -1.1668 8 6 6.0232 1.4071 -1.0718 9 7 6.9935 1.4575 -2.1682 10 6 8.1608 2.2148 -2.0342 11 6 8.3983 2.9241 -0.8633 12 6 9.5536 3.6671 -0.7291 13 6 10.4735 3.7148 -1.7687 14 8 11.6074 4.4507 -1.6387 15 6 12.5109 4.3641 -2.6355 16 1 12.2815 3.7953 -3.5243 17 6 13.7345 5.0051 -2.5194 18 7 14.0139 5.6985 -1.4366 19 14 14.9868 4.8844 -3.9003 20 1 14.4337 4.0522 -4.9988 21 1 15.2902 6.2444 -4.4135 22 1 16.2323 4.2602 -3.3859 23 6 10.2336 3.0103 -2.9415 24 6 9.0809 2.2631 -3.0744 25 6 5.2123 0.1127 -1.1676 26 6 4.2229 0.0470 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.3560 3.3689 -0.1194 31 1 4.6252 2.7049 0.9394 32 1 4.5389 2.5723 -2.1102 33 1 5.6637 3.5332 -1.1192 34 1 6.5508 1.4353 -0.1183 35 1 6.8259 0.9655 -2.9872 36 1 7.6809 2.8909 -0.0568 37 1 9.7403 4.2151 0.1826 38 1 14.8700 6.1473 -1.3555 39 1 10.9488 3.0479 -3.7499 40 1 8.8943 1.7158 -3.9864 41 1 5.8861 -0.7429 -1.1221 42 1 4.6648 0.0954 -2.1100 43 1 4.7706 -0.0275 0.9389 44 1 3.5757 -0.8223 -0.1160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089155222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = -93.067531 kcal Electronic energy + Delta-G solvation = -26199.662162 eV Core-core repulsion = 22310.136247 eV Total energy + Delta-G solvation = -3889.525915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74340 -40.75446 -39.66682 -38.32876 -37.33957 -35.74566 -34.13513 -32.54038 -32.16782 -31.64453 -28.97020 -28.31750 -27.14948 -25.44004 -24.44038 -23.69464 -22.61655 -22.03135 -20.89373 -19.69190 -19.15861 -18.85011 -18.13417 -17.74666 -17.45882 -16.81655 -16.19296 -15.87696 -15.63832 -15.49540 -15.39339 -15.29446 -15.20934 -14.69199 -14.45411 -14.27840 -14.03339 -13.87870 -13.55969 -13.43930 -13.21780 -13.18347 -12.94312 -12.73212 -12.64262 -12.29541 -12.14677 -12.05935 -11.87368 -11.81000 -11.79473 -11.43602 -11.06021 -10.88178 -10.15605 -9.87942 -9.73435 -8.38133 -7.90194 -6.01338 0.62571 0.96664 1.12776 1.37386 1.46211 1.55356 1.66589 2.23354 2.62295 2.91063 2.93475 3.28206 3.70126 3.72241 3.88662 4.03761 4.07305 4.19003 4.23058 4.31109 4.35248 4.36879 4.41400 4.51868 4.60625 4.68322 4.74575 4.76049 4.80943 4.84290 4.98235 4.99664 5.11552 5.16770 5.24006 5.26428 5.35286 5.45430 5.52293 5.59658 5.82438 6.02187 6.13823 6.21809 6.65811 7.06375 7.09354 7.15216 7.95837 8.86605 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043284 B = 0.002063 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.731980 B =13572.268969 C =13877.001729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.370 6.370 3 C 0.643 3.357 4 O -0.612 6.612 5 N -0.590 5.590 6 C 0.130 3.870 7 C -0.144 4.144 8 C 0.156 3.844 9 N -0.739 5.739 10 C 0.157 3.843 11 C -0.142 4.142 12 C -0.156 4.156 13 C 0.060 3.940 14 O -0.244 6.244 15 C -0.403 4.403 16 H 0.098 0.902 17 C -0.030 4.030 18 N -0.927 5.927 19 Si 1.016 2.984 20 H -0.252 1.252 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.195 4.195 24 C -0.146 4.146 25 C -0.131 4.131 26 C 0.115 3.885 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.403 0.597 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.416 -16.472 1.026 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.398 3.602 4 O -0.504 6.504 5 N -0.330 5.330 6 C 0.008 3.992 7 C -0.183 4.183 8 C 0.050 3.950 9 N -0.372 5.372 10 C 0.056 3.944 11 C -0.164 4.164 12 C -0.176 4.176 13 C 0.011 3.989 14 O -0.152 6.152 15 C -0.480 4.480 16 H 0.115 0.885 17 C -0.226 4.226 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.175 1.175 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.215 4.215 24 C -0.168 4.168 25 C -0.169 4.169 26 C -0.007 4.007 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.164 0.836 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.557 -15.942 1.444 29.314 hybrid contribution 0.663 0.482 -0.824 1.162 sum -23.894 -15.460 0.620 28.466 Atomic orbital electron populations 1.23482 0.72994 1.05608 1.02374 1.86232 1.25559 1.29831 1.86747 1.18287 0.83696 0.82186 0.76029 1.90971 1.65190 1.36299 1.57924 1.47102 1.01470 1.09572 1.74871 1.21661 0.94788 0.83180 0.99566 1.22408 0.97259 1.00320 0.98358 1.20865 0.88498 0.94358 0.91236 1.44344 1.18852 1.54710 1.19337 1.17477 0.88344 0.94818 0.93777 1.20464 0.97493 1.00383 0.98071 1.20259 0.95234 1.04406 0.97658 1.19770 0.89084 0.94521 0.95541 1.83932 1.25781 1.60020 1.45451 1.21774 0.95216 1.33671 0.97336 0.88474 1.26518 0.99156 0.95865 1.01066 1.70211 1.24115 1.33123 1.29238 0.84556 0.76714 0.78703 0.76393 1.17540 1.19605 1.19535 1.21043 1.00010 1.02475 0.97939 1.20492 0.94038 1.02924 0.99396 1.22105 0.97896 0.97572 0.99354 1.21888 0.93426 0.85869 0.99501 0.92216 0.92380 0.84493 0.90028 0.89027 0.92035 0.90528 0.89987 0.76198 0.83649 0.86994 0.92210 0.86652 0.84464 0.88120 0.90994 0.89052 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -6.01 9.20 -55.49 -0.51 -6.52 16 3 C 0.64 13.49 8.43 129.79 1.09 14.58 16 4 O -0.61 -17.13 15.55 19.80 0.31 -16.82 16 5 N -0.59 -9.62 2.97 -949.30 -2.82 -12.45 16 6 C 0.13 2.14 6.43 86.36 0.56 2.70 16 7 C -0.14 -2.44 5.58 30.68 0.17 -2.27 16 8 C 0.16 2.41 2.11 45.03 0.09 2.50 16 9 N -0.74 -14.67 5.25 -318.61 -1.67 -16.35 16 10 C 0.16 4.58 6.64 38.21 0.25 4.83 16 11 C -0.14 -4.54 8.81 22.38 0.20 -4.35 16 12 C -0.16 -6.56 9.98 22.37 0.22 -6.34 16 13 C 0.06 3.02 6.65 22.59 0.15 3.17 16 14 O -0.24 -14.96 9.76 -23.04 -0.22 -15.18 16 15 C -0.40 -23.97 9.48 67.91 0.64 -23.33 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 17 C -0.03 -1.75 5.49 84.82 0.47 -1.28 16 18 N -0.93 -58.25 13.67 21.61 0.30 -57.95 16 19 Si 1.02 43.95 29.55 68.60 2.03 45.97 16 20 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C -0.19 -8.49 9.16 22.37 0.20 -8.28 16 24 C -0.15 -4.90 9.89 22.39 0.22 -4.68 16 25 C -0.13 -1.36 5.55 30.66 0.17 -1.19 16 26 C 0.12 1.18 6.45 86.35 0.56 1.74 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 1.65 7.00 -2.39 -0.02 1.63 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.51 7.67 -2.39 -0.02 1.50 16 34 H 0.08 1.30 6.49 -2.38 -0.02 1.28 16 35 H 0.40 6.64 8.61 -92.71 -0.80 5.85 16 36 H 0.15 3.63 6.09 -2.91 -0.02 3.61 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.12 5.17 5.63 -2.91 -0.02 5.15 16 40 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 0.92 6.92 -2.39 -0.02 0.91 16 Total: -1.00 -79.34 361.66 3.83 -75.51 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.23 Total: 24.26 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 6.20 Total: -20.47 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -4.20 Total: -86.74 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.43 Total: -38.53 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -79.34 3.83 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089155222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.562 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds