Wall clock time and date at job start Tue Mar 31 2020 12:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47299 * 180.02562 * 18 17 15 20 20 N 1.46501 * 109.47023 * 180.02562 * 19 18 17 21 21 C 1.34780 * 119.99937 * 179.97438 * 20 19 18 22 22 O 1.21281 * 119.99919 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.99678 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.49851 * 248.61675 * 23 21 20 25 25 C 1.53001 * 60.00111 * 252.51521 * 24 23 21 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 33 33 H 1.09000 * 109.47215 * 300.01034 * 17 15 14 34 34 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 35 35 H 1.09004 * 109.47018 * 300.00055 * 18 17 15 36 36 H 1.08995 * 109.47387 * 59.99654 * 18 17 15 37 37 H 1.09004 * 109.46801 * 299.99785 * 19 18 17 38 38 H 1.08995 * 109.47240 * 59.99805 * 19 18 17 39 39 H 0.96998 * 119.99939 * 359.97438 * 20 19 18 40 40 H 1.08997 * 115.55661 * 34.33167 * 23 21 20 41 41 H 1.09005 * 117.49822 * 0.02562 * 24 23 21 42 42 H 1.09000 * 117.49924 * 145.01875 * 24 23 21 43 43 H 1.09003 * 117.49337 * 252.51124 * 25 24 23 44 44 H 1.08996 * 117.52056 * 107.48128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 6 5.6670 -10.6371 1.5472 20 7 6.5148 -11.6179 0.8651 21 6 6.6056 -12.8761 1.3397 22 8 5.9857 -13.1962 2.3318 23 6 7.4783 -13.8848 0.6383 24 6 6.7824 -15.0432 -0.0794 25 6 7.5392 -15.2962 1.2261 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2837 -2.6015 -1.7660 31 1 5.6844 -5.1081 -1.1009 32 1 3.6742 -5.9850 2.0407 33 1 5.2048 -8.1442 2.5484 34 1 3.8259 -8.6269 1.5316 35 1 5.3947 -9.4278 -0.2143 36 1 6.7731 -8.9448 0.8029 37 1 6.0141 -10.5078 2.5724 38 1 4.6359 -10.9904 1.5546 39 1 7.0109 -11.3618 0.0718 40 1 8.3880 -13.4874 0.1883 41 1 5.6934 -15.0754 -0.0446 42 1 7.2342 -15.4078 -1.0019 43 1 8.4889 -15.8273 1.1623 44 1 6.9485 -15.4949 2.1202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117855838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:38 Heat of formation + Delta-G solvation = 29.056637 kcal Electronic energy + Delta-G solvation = -24780.991915 eV Core-core repulsion = 20929.054453 eV Total energy + Delta-G solvation = -3851.937463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80743 -40.30762 -39.42518 -36.91930 -35.78237 -34.83084 -33.37799 -32.98897 -31.29105 -29.46354 -28.18964 -26.94612 -24.63815 -22.95276 -22.83836 -22.23337 -21.39199 -20.47448 -20.00665 -19.61916 -17.85001 -17.21006 -17.07958 -16.55307 -16.44568 -16.15273 -15.65615 -15.37826 -15.16677 -14.67149 -14.55244 -14.10964 -13.89986 -13.60929 -13.12026 -12.97726 -12.67271 -12.64416 -12.51741 -12.39630 -12.07453 -12.02235 -11.86041 -11.28826 -11.17807 -11.10641 -10.98764 -10.90977 -10.54988 -10.25386 -10.13984 -10.01493 -9.68581 -9.55144 -9.46961 -8.79134 -8.23914 -7.57950 -6.25863 -4.28499 2.10731 2.23874 2.55807 2.79462 2.84974 3.14360 3.19191 3.22580 3.39619 3.62884 3.73694 4.20541 4.20832 4.31445 4.40273 4.41309 4.59901 4.61085 4.66643 4.95009 5.02073 5.11723 5.12580 5.22961 5.25017 5.34926 5.43497 5.46417 5.65552 5.66460 5.71927 5.82356 6.03686 6.15648 6.35061 6.40359 6.51285 6.61102 7.09208 7.21878 7.31367 7.51770 7.77488 7.83859 8.17380 8.30696 8.52352 8.83474 9.28908 10.86795 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046665 B = 0.001590 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.882229 B =17604.216046 C =17858.893618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.284 4.284 13 C 0.259 3.741 14 N -0.631 5.631 15 C 0.519 3.481 16 O -0.520 6.520 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.117 3.883 20 N -0.726 5.726 21 C 0.542 3.458 22 O -0.542 6.542 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.148 4.148 26 N -0.297 5.297 27 H 0.268 0.732 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.057 -24.622 0.344 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.279 5.279 15 C 0.306 3.694 16 O -0.394 6.394 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.006 4.006 20 N -0.377 5.377 21 C 0.328 3.672 22 O -0.419 6.419 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.185 4.185 26 N -0.128 5.128 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.248 0.752 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.084 -23.971 1.188 28.347 hybrid contribution 0.724 0.923 -0.577 1.307 sum 15.808 -23.048 0.611 27.955 Atomic orbital electron populations 1.69872 1.06160 1.27327 1.49072 1.24831 0.94872 0.98801 0.94218 0.86886 0.80222 0.83801 0.79011 1.19695 1.18973 1.20557 1.21107 0.87776 0.95722 1.52787 0.89662 1.20060 0.97472 0.72964 0.98219 1.48625 1.32763 1.10190 1.18441 1.22565 0.96006 0.94718 0.96518 1.21538 1.11625 0.96787 1.01576 1.19149 0.98921 0.86729 0.94714 1.42532 1.47592 1.07437 1.30328 1.20603 0.79033 0.84895 0.84910 1.90643 1.39419 1.83733 1.25642 1.21508 1.03121 0.91860 1.00881 1.21520 1.01399 0.92342 1.00175 1.21397 0.95222 0.87485 0.96512 1.45908 1.49193 1.10769 1.31835 1.19681 0.81312 0.82277 0.83928 1.90709 1.46113 1.79157 1.25902 1.22209 1.02163 0.90617 1.06844 1.22952 1.00270 0.98891 0.96881 1.22961 1.02756 0.94735 0.98095 1.77399 1.23662 0.95581 1.16149 0.92152 0.92887 0.94449 0.81393 0.82124 0.75200 0.88083 0.88015 0.90102 0.90149 0.91172 0.91165 0.76168 0.85761 0.88196 0.87679 0.87861 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.02 9.79 -34.44 -0.34 -15.36 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.44 5.33 -5.20 -0.03 5.41 16 10 N -0.32 -7.12 3.67 -62.56 -0.23 -7.35 16 11 C 0.05 0.97 11.43 -17.24 -0.20 0.77 16 12 C -0.28 -5.35 9.61 -39.83 -0.38 -5.74 16 13 C 0.26 4.98 8.11 -154.39 -1.25 3.73 16 14 N -0.63 -9.01 5.45 -11.13 -0.06 -9.07 16 15 C 0.52 6.45 7.80 -10.99 -0.09 6.36 16 16 O -0.52 -8.05 13.11 5.54 0.07 -7.98 16 17 C -0.13 -0.97 5.70 -27.89 -0.16 -1.12 16 18 C -0.12 -0.80 4.62 -26.73 -0.12 -0.92 16 19 C 0.12 0.82 5.67 -4.04 -0.02 0.79 16 20 N -0.73 -4.92 5.56 -60.29 -0.33 -5.26 16 21 C 0.54 4.79 7.61 -10.99 -0.08 4.71 16 22 O -0.54 -6.96 16.26 5.56 0.09 -6.87 16 23 C -0.20 -1.17 6.19 -91.77 -0.57 -1.74 16 24 C -0.15 -0.77 10.23 -26.73 -0.27 -1.05 16 25 C -0.15 -0.85 10.04 -26.73 -0.27 -1.12 16 26 N -0.30 -6.69 12.42 31.44 0.39 -6.30 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 29 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 30 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 31 H 0.16 2.90 5.92 -52.49 -0.31 2.59 16 32 H 0.41 4.72 8.82 -40.82 -0.36 4.36 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.40 1.80 8.47 -40.82 -0.35 1.46 16 40 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -36.63 377.58 -8.57 -45.20 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.41 Total: 5.50 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.88 Total: -3.24 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.54 Total: -53.63 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.16 Total: -14.85 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.63 -8.57 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.259 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds