Wall clock time and date at job start Tue Mar 31 2020 12:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47299 * 180.02562 * 18 17 15 20 20 N 1.46501 * 109.47023 * 180.02562 * 19 18 17 21 21 C 1.34780 * 119.99937 * 179.97438 * 20 19 18 22 22 O 1.21281 * 119.99919 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.99678 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.49851 * 248.61675 * 23 21 20 25 25 C 1.53001 * 60.00111 * 252.51521 * 24 23 21 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 33 33 H 1.09000 * 109.47215 * 300.01034 * 17 15 14 34 34 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 35 35 H 1.09004 * 109.47018 * 300.00055 * 18 17 15 36 36 H 1.08995 * 109.47387 * 59.99654 * 18 17 15 37 37 H 1.09004 * 109.46801 * 299.99785 * 19 18 17 38 38 H 1.08995 * 109.47240 * 59.99805 * 19 18 17 39 39 H 0.96998 * 119.99939 * 359.97438 * 20 19 18 40 40 H 1.08997 * 115.55661 * 34.33167 * 23 21 20 41 41 H 1.09005 * 117.49822 * 0.02562 * 24 23 21 42 42 H 1.09000 * 117.49924 * 145.01875 * 24 23 21 43 43 H 1.09003 * 117.49337 * 252.51124 * 25 24 23 44 44 H 1.08996 * 117.52056 * 107.48128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 6 5.6670 -10.6371 1.5472 20 7 6.5148 -11.6179 0.8651 21 6 6.6056 -12.8761 1.3397 22 8 5.9857 -13.1962 2.3318 23 6 7.4783 -13.8848 0.6383 24 6 6.7824 -15.0432 -0.0794 25 6 7.5392 -15.2962 1.2261 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2837 -2.6015 -1.7660 31 1 5.6844 -5.1081 -1.1009 32 1 3.6742 -5.9850 2.0407 33 1 5.2048 -8.1442 2.5484 34 1 3.8259 -8.6269 1.5316 35 1 5.3947 -9.4278 -0.2143 36 1 6.7731 -8.9448 0.8029 37 1 6.0141 -10.5078 2.5724 38 1 4.6359 -10.9904 1.5546 39 1 7.0109 -11.3618 0.0718 40 1 8.3880 -13.4874 0.1883 41 1 5.6934 -15.0754 -0.0446 42 1 7.2342 -15.4078 -1.0019 43 1 8.4889 -15.8273 1.1623 44 1 6.9485 -15.4949 2.1202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117855838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:38 Heat of formation + Delta-G solvation = 2.318978 kcal Electronic energy + Delta-G solvation = -24782.151347 eV Core-core repulsion = 20929.054453 eV Total energy + Delta-G solvation = -3853.096895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22057 -40.98703 -40.57457 -37.43343 -36.52002 -36.14203 -35.18904 -33.82056 -32.99221 -30.99386 -29.37584 -28.28569 -25.41060 -24.42428 -23.32815 -23.20139 -22.41902 -21.67329 -21.02977 -20.73731 -19.10968 -18.41389 -18.31817 -17.90110 -17.17141 -17.05079 -16.84298 -16.45747 -16.17932 -15.79761 -15.55701 -15.23330 -14.92492 -14.77578 -14.66805 -14.40785 -13.86652 -13.80706 -13.52488 -13.31116 -13.21636 -12.95393 -12.65094 -12.47785 -12.43195 -12.17445 -11.86561 -11.82685 -11.62980 -11.53473 -11.44279 -11.43310 -10.96820 -10.88370 -10.82392 -10.10336 -9.76630 -9.10297 -8.38228 -6.48831 0.95020 1.32274 1.38865 1.40589 1.47335 1.47718 1.50593 2.12471 2.24791 2.28439 2.44563 2.94010 2.94535 3.53372 3.73663 3.88090 3.93802 3.99097 4.00542 4.04143 4.20248 4.24028 4.33137 4.55245 4.59590 4.65934 4.73223 4.75624 4.82962 4.87688 4.90849 4.93763 5.04703 5.13906 5.14864 5.23198 5.24116 5.26948 5.45735 5.90173 6.00830 6.25906 6.40816 6.53761 6.57216 7.00210 7.14086 7.15309 7.22982 8.78791 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046665 B = 0.001590 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.882229 B =17604.216046 C =17858.893618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.229 1.229 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.630 5.630 15 C 0.519 3.481 16 O -0.549 6.549 17 C -0.123 4.123 18 C -0.104 4.104 19 C 0.121 3.879 20 N -0.716 5.716 21 C 0.534 3.466 22 O -0.590 6.590 23 C -0.200 4.200 24 C -0.144 4.144 25 C -0.155 4.155 26 N -0.351 5.351 27 H 0.272 0.728 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.209 0.791 31 H 0.170 0.830 32 H 0.424 0.576 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.152 0.848 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.850 -24.563 -0.543 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.152 1.152 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.089 4.089 12 C -0.325 4.325 13 C 0.009 3.991 14 N -0.279 5.279 15 C 0.308 3.692 16 O -0.425 6.425 17 C -0.163 4.163 18 C -0.143 4.143 19 C -0.003 4.003 20 N -0.367 5.367 21 C 0.322 3.678 22 O -0.471 6.471 23 C -0.221 4.221 24 C -0.181 4.181 25 C -0.193 4.193 26 N -0.182 5.182 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.226 0.774 31 H 0.188 0.812 32 H 0.262 0.738 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.170 0.830 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.909 -23.947 0.283 29.904 hybrid contribution -0.180 0.717 -0.309 0.802 sum 17.729 -23.229 -0.026 29.222 Atomic orbital electron populations 1.70050 1.08595 1.28817 1.50621 1.25923 0.95763 1.03540 0.93170 0.85613 0.79896 0.77213 0.79616 1.19071 1.15209 1.20323 1.21242 0.90563 0.93719 1.53126 0.95611 1.19886 0.94101 0.74443 0.99617 1.48504 1.34402 1.10013 1.19782 1.23262 0.94423 0.94839 0.96395 1.21776 1.11935 0.97132 1.01677 1.19594 0.97319 0.87511 0.94714 1.42799 1.48239 1.06247 1.30635 1.21564 0.77518 0.85602 0.84504 1.90618 1.40521 1.84261 1.27127 1.21582 1.04752 0.88590 1.01401 1.21397 1.01154 0.91985 0.99746 1.21322 0.95053 0.87423 0.96461 1.45876 1.48698 1.10233 1.31940 1.20242 0.81038 0.83077 0.83454 1.90685 1.48241 1.80047 1.28120 1.22310 1.02722 0.90049 1.07014 1.23029 0.99642 0.97939 0.97529 1.23005 1.03626 0.95032 0.97611 1.77313 1.26025 0.96923 1.17948 0.91877 0.89952 0.93804 0.77416 0.81242 0.73803 0.85428 0.85829 0.90650 0.90326 0.91345 0.91619 0.74667 0.83042 0.89541 0.85167 0.85662 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.96 40.45 27.47 68.60 1.88 42.34 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.60 9.79 25.60 0.25 -31.35 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 9 C 0.24 11.00 5.33 85.63 0.46 11.46 16 10 N -0.35 -15.32 3.67 -351.85 -1.29 -16.61 16 11 C 0.06 2.13 11.43 83.52 0.96 3.09 16 12 C -0.29 -10.81 9.61 22.11 0.21 -10.60 16 13 C 0.26 10.13 8.11 133.33 1.08 11.21 16 14 N -0.63 -17.52 5.45 -307.52 -1.68 -19.19 16 15 C 0.52 12.13 7.80 87.66 0.68 12.81 16 16 O -0.55 -16.31 13.11 -3.08 -0.04 -16.35 16 17 C -0.12 -1.50 5.70 29.84 0.17 -1.33 16 18 C -0.10 -1.24 4.62 30.59 0.14 -1.10 16 19 C 0.12 1.51 5.67 86.38 0.49 2.00 16 20 N -0.72 -8.77 5.56 -463.06 -2.57 -11.34 16 21 C 0.53 9.12 7.61 87.66 0.67 9.79 16 22 O -0.59 -15.44 16.26 -3.03 -0.05 -15.49 16 23 C -0.20 -2.07 6.19 -11.54 -0.07 -2.14 16 24 C -0.14 -1.24 10.23 30.60 0.31 -0.93 16 25 C -0.16 -1.64 10.04 30.60 0.31 -1.33 16 26 N -0.35 -16.12 12.42 -54.45 -0.68 -16.80 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.08 3.29 7.12 -2.39 -0.02 3.27 16 29 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 30 H 0.21 5.52 8.06 -2.91 -0.02 5.50 16 31 H 0.17 5.91 5.92 -2.91 -0.02 5.89 16 32 H 0.42 9.45 8.82 -92.71 -0.82 8.63 16 33 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.01 8.10 -2.38 -0.02 0.99 16 36 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.42 2.93 8.47 -92.71 -0.79 2.14 16 40 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 Total: -1.00 -84.84 377.58 1.38 -83.46 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.62 Total: 24.76 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.12 Total: 2.88 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.92 Total: -121.58 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.09 Total: -31.85 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.34 kcal Total: -84.84 1.38 -83.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.779 kcal (2) G-P(sol) polarization free energy of solvation -84.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds