Wall clock time and date at job start Tue Mar 31 2020 12:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47340 * 274.06449 * 3 2 1 5 5 H 1.48499 * 109.47318 * 34.06809 * 3 2 1 6 6 H 1.48507 * 109.47077 * 154.06349 * 3 2 1 7 7 C 1.38813 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00444 * 197.52595 * 7 2 1 9 9 N 1.36937 * 119.99877 * 17.52541 * 7 2 1 10 10 C 1.46927 * 120.63362 * 208.00135 * 9 7 2 11 11 C 1.53189 * 108.77330 * 233.63469 * 10 9 7 12 12 C 1.53040 * 109.31038 * 305.35767 * 11 10 9 13 13 O 1.45204 * 109.45703 * 181.38924 * 12 11 10 14 14 C 1.34232 * 116.99884 * 149.97271 * 13 12 11 15 15 O 1.20829 * 120.00101 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00058 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47249 * 180.02562 * 16 14 13 18 18 C 1.35319 * 125.86852 * 124.99996 * 17 16 14 19 19 C 1.35350 * 106.17612 * 180.02562 * 18 17 16 20 20 C 1.50697 * 126.75484 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49693 * 84.99573 * 20 19 18 22 22 C 1.52997 * 60.03323 * 252.50225 * 21 20 19 23 23 N 1.33780 * 106.49280 * 0.26076 * 19 18 17 24 24 N 1.28633 * 108.88801 * 359.56407 * 23 19 18 25 25 C 1.53033 * 109.52721 * 61.37834 * 12 11 10 26 26 C 1.46925 * 120.63140 * 28.02363 * 9 7 2 27 27 H 0.96991 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58895 * 113.83922 * 10 9 7 29 29 H 1.09007 * 109.69997 * 353.48603 * 10 9 7 30 30 H 1.09012 * 109.49469 * 185.41173 * 11 10 9 31 31 H 1.08999 * 109.52800 * 65.32973 * 11 10 9 32 32 H 1.09001 * 109.46089 * 301.35912 * 12 11 10 33 33 H 1.08999 * 109.47228 * 60.00396 * 16 14 13 34 34 H 1.09004 * 109.47291 * 300.00213 * 16 14 13 35 35 H 1.07996 * 126.91347 * 359.97438 * 18 17 16 36 36 H 1.09002 * 115.56416 * 230.68618 * 20 19 18 37 37 H 1.08998 * 117.50037 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49761 * 144.99619 * 21 20 19 39 39 H 1.08998 * 117.49912 * 107.49859 * 22 21 20 40 40 H 1.09000 * 117.50020 * 252.52163 * 22 21 20 41 41 H 1.09007 * 109.49941 * 58.57801 * 25 12 11 42 42 H 1.08997 * 109.50123 * 178.67488 * 25 12 11 43 43 H 1.08998 * 109.58945 * 246.15591 * 26 9 7 44 44 H 1.09007 * 109.58510 * 6.43559 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3734 -2.3607 -0.3561 10 6 1.8147 -3.6542 0.1833 11 6 2.0776 -4.6111 -0.9837 12 6 0.8285 -4.6906 -1.8643 13 8 1.0630 -5.6221 -2.9532 14 6 -0.0037 -6.2829 -3.4302 15 8 -1.0971 -6.0890 -2.9538 16 6 0.1623 -7.2656 -4.5604 17 7 -1.1392 -7.8487 -4.8957 18 6 -1.7148 -7.8520 -6.1203 19 6 -2.9007 -8.4886 -5.9779 20 6 -3.9189 -8.7506 -7.0576 21 6 -3.7270 -9.9985 -7.9217 22 6 -3.4596 -8.6122 -8.5112 23 7 -2.9940 -8.8339 -4.6888 24 7 -1.9319 -8.4455 -4.0758 25 6 0.5169 -3.3058 -2.4362 26 6 0.2360 -2.3340 -1.2857 27 1 -0.4850 0.8399 -0.0004 28 1 1.0369 -4.0666 0.8260 29 1 2.7306 -3.5192 0.7587 30 1 2.3128 -5.6022 -0.5955 31 1 2.9166 -4.2433 -1.5744 32 1 -0.0156 -5.0352 -1.2670 33 1 0.8477 -8.0567 -4.2563 34 1 0.5652 -6.7513 -5.4329 35 1 -1.3097 -7.4307 -7.0285 36 1 -4.9409 -8.4536 -6.8223 37 1 -2.8646 -10.6302 -7.7091 38 1 -4.6228 -10.5228 -8.2546 39 1 -2.4211 -8.3316 -8.6866 40 1 -4.1797 -8.2242 -9.2317 41 1 1.3706 -2.9498 -3.0131 42 1 -0.3589 -3.3675 -3.0821 43 1 -0.6706 -2.6388 -0.7629 44 1 0.1092 -1.3254 -1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120706709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:32 Heat of formation + Delta-G solvation = 68.007382 kcal Electronic energy + Delta-G solvation = -26446.640824 eV Core-core repulsion = 22596.392392 eV Total energy + Delta-G solvation = -3850.248432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.53837 -40.55945 -37.83511 -37.51513 -36.04789 -34.74809 -32.80558 -30.98409 -30.49298 -29.91550 -29.14593 -25.32528 -24.39891 -23.45811 -22.75143 -22.35092 -21.87752 -21.08566 -20.40472 -19.43978 -18.10290 -17.83758 -17.02243 -16.55373 -16.34188 -15.98575 -15.50371 -15.00428 -14.88742 -14.71301 -14.08143 -13.82624 -13.61651 -13.36534 -12.96653 -12.82352 -12.62828 -12.54800 -11.95452 -11.80550 -11.62922 -11.45904 -11.39750 -11.24807 -11.14253 -10.87463 -10.80658 -10.71907 -10.57029 -10.42327 -10.28776 -10.19699 -9.97958 -9.75553 -9.52666 -9.27923 -8.54666 -6.80123 -5.86800 -3.30243 1.23327 1.77268 2.01154 2.28740 2.65552 3.33636 3.40738 3.41314 3.42361 3.86030 4.16474 4.39990 4.43006 4.45955 4.47434 4.50070 4.56724 4.88020 5.00844 5.12868 5.24058 5.29412 5.31632 5.43605 5.44552 5.46712 5.60908 5.70618 5.78092 5.87861 5.91348 6.06703 6.11210 6.19711 6.33374 6.40245 6.48597 6.60577 6.70969 6.83882 7.21845 7.53153 7.64345 7.72799 8.31827 8.35760 9.11515 9.74418 10.30581 11.22222 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002297 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.001573 B =12186.577331 C =12664.155244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.127 4.127 12 C 0.100 3.900 13 O -0.353 6.353 14 C 0.444 3.556 15 O -0.476 6.476 16 C 0.125 3.875 17 N -0.288 5.288 18 C -0.044 4.044 19 C 0.010 3.990 20 C -0.071 4.071 21 C -0.165 4.165 22 C -0.170 4.170 23 N -0.260 5.260 24 N -0.052 5.052 25 C -0.153 4.153 26 C 0.174 3.826 27 H 0.255 0.745 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.192 0.808 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -17.609 -17.440 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.020 3.980 11 C -0.167 4.167 12 C 0.047 3.953 13 O -0.270 6.270 14 C 0.283 3.717 15 O -0.361 6.361 16 C 0.002 3.998 17 N -0.082 5.082 18 C -0.194 4.194 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.203 4.203 22 C -0.208 4.208 23 N -0.127 5.127 24 N -0.031 5.031 25 C -0.193 4.193 26 C 0.048 3.952 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.209 0.791 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.999 -17.777 -15.729 23.758 hybrid contribution 0.611 1.400 -1.025 1.839 sum -0.388 -16.377 -16.754 23.432 Atomic orbital electron populations 1.70030 1.05325 1.25745 1.53405 1.25091 0.95307 0.98618 1.00582 0.86240 0.79166 0.83513 0.77636 1.21408 1.21713 1.20290 1.19202 0.92867 0.84700 1.41871 0.91371 1.44131 1.36365 1.01619 1.49326 1.20896 0.98454 0.86511 0.92090 1.22258 0.96186 1.00266 0.97951 1.23063 1.00063 0.87202 0.85007 1.86489 1.36788 1.52821 1.50882 1.22944 0.84033 0.80846 0.83880 1.90807 1.26684 1.61931 1.56696 1.21379 0.81445 0.97531 0.99426 1.46797 1.16093 1.38195 1.07113 1.23262 0.96872 1.08403 0.90841 1.21004 0.95224 1.03115 0.93328 1.20014 0.97374 1.03965 0.87797 1.23001 1.03786 0.90819 1.02648 1.23038 1.02719 1.00333 0.94670 1.75096 1.14102 1.18958 1.04561 1.78487 0.97012 1.10017 1.17633 1.22677 1.00879 0.94496 1.01207 1.20771 0.88988 0.98102 0.87345 0.93453 0.95998 0.91625 0.92106 0.91006 0.90044 0.84104 0.83524 0.79149 0.85917 0.88683 0.88066 0.88566 0.87882 0.91549 0.92892 0.95888 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 11.22 55.49 0.62 -25.40 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.59 2.99 -172.32 -0.52 -15.11 16 10 C 0.15 3.00 6.51 -3.71 -0.02 2.97 16 11 C -0.13 -2.15 5.74 -26.61 -0.15 -2.30 16 12 C 0.10 1.76 2.42 -26.69 -0.06 1.70 16 13 O -0.35 -5.17 9.88 -39.26 -0.39 -5.56 16 14 C 0.44 6.13 7.94 36.00 0.29 6.42 16 15 O -0.48 -8.74 14.90 -18.75 -0.28 -9.02 16 16 C 0.13 1.04 7.05 -5.20 -0.04 1.01 16 17 N -0.29 -3.30 3.20 -62.44 -0.20 -3.49 16 18 C -0.04 -0.42 10.89 -17.04 -0.19 -0.60 16 19 C 0.01 0.12 6.88 -82.77 -0.57 -0.45 16 20 C -0.07 -0.60 6.33 -91.73 -0.58 -1.18 16 21 C -0.16 -1.06 10.23 -26.73 -0.27 -1.33 16 22 C -0.17 -0.93 10.03 -26.69 -0.27 -1.20 16 23 N -0.26 -3.95 12.41 33.29 0.41 -3.54 16 24 N -0.05 -0.80 12.13 60.35 0.73 -0.07 16 25 C -0.15 -2.99 5.72 -26.62 -0.15 -3.14 16 26 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.27 7.94 -51.92 -0.41 0.86 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.58 7.16 -51.93 -0.37 1.20 16 33 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.15 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.19 0.94 7.46 -52.49 -0.39 0.55 16 36 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.43 7.24 -51.93 -0.38 0.05 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.51 6.06 -51.93 -0.31 2.19 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -35.03 366.86 -7.87 -42.91 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.48 Total: -1.55 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.27 Total: -1.03 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 1.05 Total: -47.60 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.67 Total: -14.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.03 -7.87 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120706709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.913 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds