Wall clock time and date at job start Tue Mar 31 2020 12:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47340 * 274.06449 * 3 2 1 5 5 H 1.48499 * 109.47318 * 34.06809 * 3 2 1 6 6 H 1.48507 * 109.47077 * 154.06349 * 3 2 1 7 7 C 1.38813 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00444 * 197.52595 * 7 2 1 9 9 N 1.36937 * 119.99877 * 17.52541 * 7 2 1 10 10 C 1.46927 * 120.63362 * 208.00135 * 9 7 2 11 11 C 1.53189 * 108.77330 * 233.63469 * 10 9 7 12 12 C 1.53040 * 109.31038 * 305.35767 * 11 10 9 13 13 O 1.45204 * 109.45703 * 181.38924 * 12 11 10 14 14 C 1.34232 * 116.99884 * 149.97271 * 13 12 11 15 15 O 1.20829 * 120.00101 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00058 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47249 * 180.02562 * 16 14 13 18 18 C 1.35319 * 125.86852 * 124.99996 * 17 16 14 19 19 C 1.35350 * 106.17612 * 180.02562 * 18 17 16 20 20 C 1.50697 * 126.75484 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49693 * 84.99573 * 20 19 18 22 22 C 1.52997 * 60.03323 * 252.50225 * 21 20 19 23 23 N 1.33780 * 106.49280 * 0.26076 * 19 18 17 24 24 N 1.28633 * 108.88801 * 359.56407 * 23 19 18 25 25 C 1.53033 * 109.52721 * 61.37834 * 12 11 10 26 26 C 1.46925 * 120.63140 * 28.02363 * 9 7 2 27 27 H 0.96991 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58895 * 113.83922 * 10 9 7 29 29 H 1.09007 * 109.69997 * 353.48603 * 10 9 7 30 30 H 1.09012 * 109.49469 * 185.41173 * 11 10 9 31 31 H 1.08999 * 109.52800 * 65.32973 * 11 10 9 32 32 H 1.09001 * 109.46089 * 301.35912 * 12 11 10 33 33 H 1.08999 * 109.47228 * 60.00396 * 16 14 13 34 34 H 1.09004 * 109.47291 * 300.00213 * 16 14 13 35 35 H 1.07996 * 126.91347 * 359.97438 * 18 17 16 36 36 H 1.09002 * 115.56416 * 230.68618 * 20 19 18 37 37 H 1.08998 * 117.50037 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49761 * 144.99619 * 21 20 19 39 39 H 1.08998 * 117.49912 * 107.49859 * 22 21 20 40 40 H 1.09000 * 117.50020 * 252.52163 * 22 21 20 41 41 H 1.09007 * 109.49941 * 58.57801 * 25 12 11 42 42 H 1.08997 * 109.50123 * 178.67488 * 25 12 11 43 43 H 1.08998 * 109.58945 * 246.15591 * 26 9 7 44 44 H 1.09007 * 109.58510 * 6.43559 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3734 -2.3607 -0.3561 10 6 1.8147 -3.6542 0.1833 11 6 2.0776 -4.6111 -0.9837 12 6 0.8285 -4.6906 -1.8643 13 8 1.0630 -5.6221 -2.9532 14 6 -0.0037 -6.2829 -3.4302 15 8 -1.0971 -6.0890 -2.9538 16 6 0.1623 -7.2656 -4.5604 17 7 -1.1392 -7.8487 -4.8957 18 6 -1.7148 -7.8520 -6.1203 19 6 -2.9007 -8.4886 -5.9779 20 6 -3.9189 -8.7506 -7.0576 21 6 -3.7270 -9.9985 -7.9217 22 6 -3.4596 -8.6122 -8.5112 23 7 -2.9940 -8.8339 -4.6888 24 7 -1.9319 -8.4455 -4.0758 25 6 0.5169 -3.3058 -2.4362 26 6 0.2360 -2.3340 -1.2857 27 1 -0.4850 0.8399 -0.0004 28 1 1.0369 -4.0666 0.8260 29 1 2.7306 -3.5192 0.7587 30 1 2.3128 -5.6022 -0.5955 31 1 2.9166 -4.2433 -1.5744 32 1 -0.0156 -5.0352 -1.2670 33 1 0.8477 -8.0567 -4.2563 34 1 0.5652 -6.7513 -5.4329 35 1 -1.3097 -7.4307 -7.0285 36 1 -4.9409 -8.4536 -6.8223 37 1 -2.8646 -10.6302 -7.7091 38 1 -4.6228 -10.5228 -8.2546 39 1 -2.4211 -8.3316 -8.6866 40 1 -4.1797 -8.2242 -9.2317 41 1 1.3706 -2.9498 -3.0131 42 1 -0.3589 -3.3675 -3.0821 43 1 -0.6706 -2.6388 -0.7629 44 1 0.1092 -1.3254 -1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120706709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:32 Heat of formation + Delta-G solvation = 45.704215 kcal Electronic energy + Delta-G solvation = -26447.607962 eV Core-core repulsion = 22596.392392 eV Total energy + Delta-G solvation = -3851.215569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.37346 -41.77328 -39.25162 -38.18644 -37.46470 -35.61926 -34.63756 -32.20508 -31.76023 -31.60476 -30.12478 -27.14784 -25.08698 -24.69215 -24.01976 -23.58372 -22.92884 -21.99272 -21.29254 -21.06547 -19.15586 -18.99299 -18.53745 -17.63637 -17.44720 -16.94752 -16.67189 -16.40288 -15.78859 -15.60808 -15.45948 -15.31500 -15.01406 -14.81530 -14.47436 -14.20007 -13.97863 -13.31613 -13.29381 -13.11632 -12.89515 -12.65583 -12.61493 -12.42644 -12.30653 -12.16834 -12.16312 -12.07161 -11.96867 -11.86027 -11.66805 -11.47880 -11.20414 -11.16227 -11.04476 -10.59502 -10.02336 -8.80366 -7.92984 -5.39700 0.40413 0.95101 1.03470 1.44250 1.46916 1.47903 1.57770 1.68076 2.48605 2.88248 3.15628 3.24074 3.37130 3.56176 3.66701 3.73571 3.81850 3.86857 3.97349 3.99064 4.05272 4.10334 4.28893 4.34265 4.37501 4.52493 4.65672 4.71405 4.76961 4.83725 4.85878 4.92082 4.97184 5.03151 5.17440 5.21125 5.22579 5.29454 5.31835 5.42319 5.46404 5.58193 5.62578 6.32850 6.50692 7.07013 7.44292 7.76570 8.29446 9.14822 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002297 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.001573 B =12186.577331 C =12664.155244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.113 4.113 12 C 0.108 3.892 13 O -0.338 6.338 14 C 0.442 3.558 15 O -0.528 6.528 16 C 0.130 3.870 17 N -0.289 5.289 18 C -0.024 4.024 19 C -0.008 4.008 20 C -0.100 4.100 21 C -0.164 4.164 22 C -0.144 4.144 23 N -0.305 5.305 24 N -0.106 5.106 25 C -0.137 4.137 26 C 0.182 3.818 27 H 0.250 0.750 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.177 0.823 34 H 0.203 0.797 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.053 0.947 43 H -0.010 1.010 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -18.538 -20.374 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.151 4.151 12 C 0.053 3.947 13 O -0.254 6.254 14 C 0.284 3.716 15 O -0.416 6.416 16 C 0.009 3.991 17 N -0.083 5.083 18 C -0.174 4.174 19 C -0.145 4.145 20 C -0.120 4.120 21 C -0.202 4.202 22 C -0.182 4.182 23 N -0.172 5.172 24 N -0.084 5.084 25 C -0.176 4.176 26 C 0.056 3.944 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.195 0.805 34 H 0.220 0.780 35 H 0.258 0.742 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.008 0.992 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.757 -18.755 -18.654 26.510 hybrid contribution -0.278 1.611 -0.145 1.641 sum 1.479 -17.144 -18.798 25.485 Atomic orbital electron populations 1.70202 1.06963 1.26043 1.55316 1.25912 0.96019 1.01951 1.01049 0.85184 0.78271 0.79138 0.77443 1.21120 1.22522 1.18749 1.19591 0.93317 0.85654 1.40680 0.90588 1.44389 1.36214 1.02720 1.50005 1.21078 0.98384 0.85374 0.93633 1.22044 0.95724 1.00903 0.96473 1.22658 0.99701 0.86586 0.85712 1.86486 1.36988 1.52200 1.49741 1.24100 0.82806 0.80520 0.84217 1.90815 1.28603 1.63630 1.58588 1.21928 0.80727 0.97303 0.99158 1.47082 1.16536 1.37290 1.07392 1.24029 0.95677 1.06248 0.91473 1.21608 0.96859 1.03394 0.92683 1.20086 0.96597 1.06485 0.88839 1.23059 1.04089 0.91053 1.01997 1.23194 1.04052 0.98671 0.92243 1.75013 1.14967 1.20414 1.06769 1.78410 0.98218 1.12586 1.19230 1.22386 1.01167 0.94821 0.99267 1.20476 0.88022 0.97507 0.88438 0.94059 0.96946 0.90539 0.88848 0.90087 0.92367 0.80549 0.77990 0.74178 0.86934 0.89075 0.87193 0.86710 0.86435 0.90698 0.92857 0.99188 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 11.22 21.65 0.24 -56.01 16 2 C -0.05 -3.01 4.90 84.86 0.42 -2.59 16 3 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.26 -14.15 9.58 84.03 0.81 -13.35 16 8 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -30.44 2.99 -699.09 -2.09 -32.53 16 10 C 0.14 5.64 6.51 86.36 0.56 6.21 16 11 C -0.11 -3.55 5.74 30.67 0.18 -3.38 16 12 C 0.11 3.69 2.42 30.62 0.07 3.77 16 13 O -0.34 -8.97 9.88 -51.44 -0.51 -9.48 16 14 C 0.44 11.28 7.94 71.23 0.57 11.84 16 15 O -0.53 -19.50 14.90 21.95 0.33 -19.17 16 16 C 0.13 1.62 7.05 85.63 0.60 2.23 16 17 N -0.29 -5.94 3.20 -351.47 -1.12 -7.06 16 18 C -0.02 -0.38 10.89 83.49 0.91 0.53 16 19 C -0.01 -0.17 6.88 41.59 0.29 0.12 16 20 C -0.10 -1.57 6.33 -11.51 -0.07 -1.65 16 21 C -0.16 -1.83 10.23 30.59 0.31 -1.52 16 22 C -0.14 -1.12 10.03 30.62 0.31 -0.82 16 23 N -0.31 -9.54 12.41 -48.60 -0.60 -10.14 16 24 N -0.11 -3.27 12.13 37.02 0.45 -2.82 16 25 C -0.14 -5.35 5.72 30.67 0.18 -5.17 16 26 C 0.18 9.05 5.31 86.36 0.46 9.51 16 27 H 0.25 14.53 8.31 -92.72 -0.77 13.76 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 2.86 7.94 -2.38 -0.02 2.84 16 30 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 2.29 7.16 -2.39 -0.02 2.28 16 33 H 0.18 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.20 0.29 8.07 -2.39 -0.02 0.27 16 35 H 0.24 0.96 7.46 -2.91 -0.02 0.94 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.46 7.24 -2.39 -0.02 0.45 16 40 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.06 3.51 6.06 -2.38 -0.01 3.49 16 Total: -1.00 -83.20 366.86 5.31 -77.89 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.00 Total: 7.27 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.58 Total: 5.73 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.13 Total: -108.56 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.18 Total: -28.66 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -83.20 5.31 -77.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120706709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.596 kcal (2) G-P(sol) polarization free energy of solvation -83.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds