Wall clock time and date at job start Tue Mar 31 2020 12:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39937 * 125.98116 * 179.71599 * 13 12 11 15 15 C 1.34770 * 119.99823 * 359.97438 * 14 13 12 16 16 O 1.21382 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.49348 * 120.00144 * 179.97438 * 15 14 13 18 18 O 1.21360 * 119.99379 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00144 * 179.97438 * 17 15 14 20 20 C 1.46500 * 120.00256 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47373 * 180.02562 * 20 19 17 22 22 C 1.53007 * 109.46869 * 180.02562 * 21 20 19 23 23 C 1.53778 * 113.61000 * 274.13239 * 22 21 20 24 24 C 1.53957 * 87.01770 * 220.04926 * 23 22 21 25 25 C 1.53781 * 87.11087 * 25.36759 * 24 23 22 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.06078 * 0.02562 * 11 10 9 31 31 H 1.07994 * 126.06669 * 180.15979 * 12 11 10 32 32 H 0.96999 * 119.99736 * 180.02562 * 14 13 12 33 33 H 0.97008 * 119.99824 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.46944 * 300.00380 * 20 19 17 35 35 H 1.08996 * 109.47208 * 59.99475 * 20 19 17 36 36 H 1.09005 * 109.46725 * 299.99578 * 21 20 19 37 37 H 1.08996 * 109.47416 * 59.99886 * 21 20 19 38 38 H 1.08999 * 112.84787 * 45.32996 * 22 21 20 39 39 H 1.09001 * 113.62190 * 334.56725 * 23 22 21 40 40 H 1.09000 * 113.61086 * 105.47490 * 23 22 21 41 41 H 1.08997 * 113.54103 * 270.81164 * 24 23 22 42 42 H 1.09003 * 113.66538 * 139.93020 * 24 23 22 43 43 H 1.08998 * 113.61236 * 220.09045 * 25 24 23 44 44 H 1.08996 * 113.69469 * 89.19451 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9589 -5.4618 -1.3027 15 6 5.5254 -6.6023 -0.8616 16 8 5.0881 -7.1543 0.1271 17 6 6.6905 -7.1877 -1.5898 18 8 7.1274 -6.6360 -2.5785 19 7 7.2574 -8.3279 -1.1484 20 6 8.4006 -8.9019 -1.8624 21 6 8.8488 -10.1850 -1.1599 22 6 10.0432 -10.7840 -1.9053 23 6 9.6435 -11.6959 -3.0773 24 6 10.7905 -12.6252 -2.6403 25 6 10.6261 -12.0362 -1.2293 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5906 -4.7507 1.7301 31 1 3.5573 -6.3466 1.0454 32 1 5.3086 -5.0204 -2.0925 33 1 6.9083 -8.7686 -0.3578 34 1 8.1105 -9.1317 -2.8877 35 1 9.2217 -8.1851 -1.8693 36 1 9.1389 -9.9554 -0.1345 37 1 8.0276 -10.9016 -1.1534 38 1 10.7948 -10.0395 -2.1679 39 1 8.6547 -12.1411 -2.9667 40 1 9.7972 -11.2416 -4.0561 41 1 11.7466 -12.3849 -3.1052 42 1 10.5429 -13.6849 -2.7026 43 1 11.5720 -11.8562 -0.7184 44 1 9.9069 -12.5736 -0.6114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121047071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:50 Heat of formation + Delta-G solvation = 22.462896 kcal Electronic energy + Delta-G solvation = -25214.245367 eV Core-core repulsion = 21362.021978 eV Total energy + Delta-G solvation = -3852.223389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15092 -40.30577 -39.45148 -38.51519 -35.89326 -34.86007 -33.69245 -31.46304 -30.98399 -29.50125 -27.07599 -26.21603 -25.92949 -24.36735 -22.92666 -22.23340 -21.37953 -20.58137 -19.89480 -19.70017 -18.39709 -17.23614 -17.03267 -16.49406 -16.37346 -16.04269 -15.75107 -15.27500 -15.06498 -14.82641 -14.32875 -14.16251 -13.81592 -13.75982 -13.29881 -13.12971 -12.92120 -12.76550 -12.53947 -12.34224 -12.03641 -11.93194 -11.66417 -11.53974 -11.20046 -11.07048 -10.85121 -10.70737 -10.64274 -10.59222 -10.16747 -10.10182 -9.62838 -9.57234 -9.04725 -8.60273 -8.32488 -7.65396 -6.60506 -4.34867 1.15012 1.99743 2.56948 2.96115 3.10802 3.37486 3.39596 3.58214 3.58468 3.76044 4.01360 4.12704 4.23681 4.32341 4.37109 4.40048 4.61044 4.78788 4.91972 5.07401 5.13080 5.25748 5.27148 5.30111 5.32092 5.42842 5.45688 5.55035 5.60710 5.61870 5.80483 5.88416 6.00320 6.02025 6.22928 6.31313 6.49947 6.69318 6.83722 7.15508 7.26732 7.54724 7.65564 7.74984 7.88637 8.30746 8.43342 8.58217 9.33287 10.77256 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.001813 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.884919 B =15442.330497 C =15902.607017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.252 3.748 14 N -0.598 5.598 15 C 0.513 3.487 16 O -0.500 6.500 17 C 0.516 3.484 18 O -0.515 6.515 19 N -0.701 5.701 20 C 0.118 3.882 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.137 4.137 26 N -0.292 5.292 27 H 0.267 0.733 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.424 0.576 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.325 -24.379 -1.848 30.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.095 5.095 11 C -0.097 4.097 12 C -0.315 4.315 13 C -0.001 4.001 14 N -0.247 5.247 15 C 0.293 3.707 16 O -0.373 6.373 17 C 0.295 3.705 18 O -0.390 6.390 19 N -0.355 5.355 20 C -0.005 4.005 21 C -0.161 4.161 22 C -0.127 4.127 23 C -0.177 4.177 24 C -0.182 4.182 25 C -0.174 4.174 26 N -0.123 5.123 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.261 0.739 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.975 -21.671 -2.692 28.284 hybrid contribution 0.204 -2.278 0.549 2.352 sum 18.179 -23.949 -2.143 30.143 Atomic orbital electron populations 1.70857 1.06773 1.30425 1.45837 1.25927 0.96296 1.02817 0.93046 0.83418 0.74814 0.74520 0.76893 1.20497 1.21226 1.21081 1.22104 0.95426 0.90404 1.56888 0.91775 1.19813 0.86266 0.82759 0.98150 1.48870 1.23125 1.19482 1.17981 1.22581 1.00387 0.90013 0.96702 1.21523 1.02236 1.06325 1.01373 1.19020 0.91520 0.94627 0.94895 1.42003 1.28877 1.23692 1.30106 1.19949 0.84305 0.81350 0.85132 1.90704 1.61994 1.59833 1.24811 1.19862 0.83915 0.81898 0.84783 1.90798 1.62743 1.60205 1.25243 1.45727 1.33097 1.24762 1.31911 1.21518 0.87746 0.94801 0.96433 1.21820 0.98301 0.96057 0.99945 1.22485 0.97234 0.96252 0.96729 1.23050 0.98897 0.97451 0.98340 1.22841 0.99088 0.99369 0.96873 1.22936 1.01173 0.96692 0.96608 1.77433 1.03229 1.15807 1.15820 0.92280 0.93458 0.94587 0.81235 0.82005 0.73877 0.74962 0.90740 0.90803 0.90734 0.90791 0.88806 0.89957 0.91342 0.90218 0.91480 0.91440 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.65 55.43 0.76 -25.42 16 2 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 3 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.10 9.24 -34.44 -0.32 -17.42 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.21 5.57 -5.19 -0.03 6.18 16 10 N -0.31 -7.21 3.67 -62.56 -0.23 -7.44 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 12 C -0.28 -5.40 9.60 -39.82 -0.38 -5.78 16 13 C 0.25 5.06 8.10 -154.55 -1.25 3.81 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.88 16 15 C 0.51 7.45 7.85 -11.64 -0.09 7.36 16 16 O -0.50 -7.78 13.60 5.47 0.07 -7.70 16 17 C 0.52 6.36 7.89 -11.64 -0.09 6.27 16 18 O -0.51 -7.43 16.48 5.49 0.09 -7.34 16 19 N -0.70 -6.24 5.55 -60.77 -0.34 -6.58 16 20 C 0.12 0.83 5.67 -4.04 -0.02 0.81 16 21 C -0.12 -0.59 5.15 -26.73 -0.14 -0.73 16 22 C -0.11 -0.50 3.64 -89.80 -0.33 -0.83 16 23 C -0.14 -0.67 7.65 -25.83 -0.20 -0.87 16 24 C -0.14 -0.64 8.09 -25.83 -0.21 -0.85 16 25 C -0.14 -0.60 7.65 -25.92 -0.20 -0.80 16 26 N -0.29 -6.77 12.42 31.41 0.39 -6.38 16 27 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 28 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 29 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 30 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.16 2.87 5.91 -52.49 -0.31 2.56 16 32 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 33 H 0.41 3.12 7.94 -40.82 -0.32 2.80 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -32.88 375.21 -8.64 -41.53 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.35 Total: 5.18 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.55 Total: -1.45 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.52 Total: -55.70 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.16 Total: -15.05 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.88 -8.64 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121047071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.990 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds