Wall clock time and date at job start Tue Mar 31 2020 12:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39937 * 125.98116 * 179.71599 * 13 12 11 15 15 C 1.34770 * 119.99823 * 359.97438 * 14 13 12 16 16 O 1.21382 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.49348 * 120.00144 * 179.97438 * 15 14 13 18 18 O 1.21360 * 119.99379 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00144 * 179.97438 * 17 15 14 20 20 C 1.46500 * 120.00256 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47373 * 180.02562 * 20 19 17 22 22 C 1.53007 * 109.46869 * 180.02562 * 21 20 19 23 23 C 1.53778 * 113.61000 * 274.13239 * 22 21 20 24 24 C 1.53957 * 87.01770 * 220.04926 * 23 22 21 25 25 C 1.53781 * 87.11087 * 25.36759 * 24 23 22 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.06078 * 0.02562 * 11 10 9 31 31 H 1.07994 * 126.06669 * 180.15979 * 12 11 10 32 32 H 0.96999 * 119.99736 * 180.02562 * 14 13 12 33 33 H 0.97008 * 119.99824 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.46944 * 300.00380 * 20 19 17 35 35 H 1.08996 * 109.47208 * 59.99475 * 20 19 17 36 36 H 1.09005 * 109.46725 * 299.99578 * 21 20 19 37 37 H 1.08996 * 109.47416 * 59.99886 * 21 20 19 38 38 H 1.08999 * 112.84787 * 45.32996 * 22 21 20 39 39 H 1.09001 * 113.62190 * 334.56725 * 23 22 21 40 40 H 1.09000 * 113.61086 * 105.47490 * 23 22 21 41 41 H 1.08997 * 113.54103 * 270.81164 * 24 23 22 42 42 H 1.09003 * 113.66538 * 139.93020 * 24 23 22 43 43 H 1.08998 * 113.61236 * 220.09045 * 25 24 23 44 44 H 1.08996 * 113.69469 * 89.19451 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9589 -5.4618 -1.3027 15 6 5.5254 -6.6023 -0.8616 16 8 5.0881 -7.1543 0.1271 17 6 6.6905 -7.1877 -1.5898 18 8 7.1274 -6.6360 -2.5785 19 7 7.2574 -8.3279 -1.1484 20 6 8.4006 -8.9019 -1.8624 21 6 8.8488 -10.1850 -1.1599 22 6 10.0432 -10.7840 -1.9053 23 6 9.6435 -11.6959 -3.0773 24 6 10.7905 -12.6252 -2.6403 25 6 10.6261 -12.0362 -1.2293 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5906 -4.7507 1.7301 31 1 3.5573 -6.3466 1.0454 32 1 5.3086 -5.0204 -2.0925 33 1 6.9083 -8.7686 -0.3578 34 1 8.1105 -9.1317 -2.8877 35 1 9.2217 -8.1851 -1.8693 36 1 9.1389 -9.9554 -0.1345 37 1 8.0276 -10.9016 -1.1534 38 1 10.7948 -10.0395 -2.1679 39 1 8.6547 -12.1411 -2.9667 40 1 9.7972 -11.2416 -4.0561 41 1 11.7466 -12.3849 -3.1052 42 1 10.5429 -13.6849 -2.7026 43 1 11.5720 -11.8562 -0.7184 44 1 9.9069 -12.5736 -0.6114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121047071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:49 Heat of formation + Delta-G solvation = 1.098156 kcal Electronic energy + Delta-G solvation = -25215.171812 eV Core-core repulsion = 21362.021978 eV Total energy + Delta-G solvation = -3853.149833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52513 -41.57646 -40.00994 -39.53023 -36.93196 -36.20595 -35.50155 -32.76853 -32.07002 -31.10206 -28.58434 -27.26244 -26.43971 -25.51413 -24.59430 -22.87293 -22.60356 -21.98769 -21.07817 -20.21239 -19.56312 -19.23136 -18.33063 -17.77368 -17.36031 -16.81114 -16.69273 -16.40415 -16.21078 -15.78476 -15.61783 -15.41946 -15.11292 -15.08347 -14.73143 -14.18582 -13.97244 -13.80026 -13.58354 -13.29350 -13.26194 -13.26034 -12.79579 -12.62204 -12.35535 -12.16446 -12.06971 -11.95905 -11.69668 -11.43254 -11.12711 -11.03753 -11.00787 -10.77108 -10.69909 -10.36805 -9.92775 -9.31256 -8.79131 -6.56685 0.00458 0.80649 1.04622 1.51081 1.57207 1.68112 1.74089 1.80109 2.20305 2.46739 2.54360 3.00632 3.21416 3.60969 3.76283 3.79927 3.88308 4.01832 4.09214 4.16106 4.30645 4.49267 4.50386 4.60859 4.65112 4.73447 4.76051 4.79463 4.89947 4.92036 4.93853 5.02084 5.06947 5.13135 5.18860 5.24949 5.44628 5.52313 5.67290 5.68483 5.76840 5.89189 6.12137 6.24503 6.39947 6.52301 6.76185 6.85950 7.18501 8.58086 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.001813 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.884919 B =15442.330497 C =15902.607017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.017 4.017 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.624 4.624 8 H 0.045 0.955 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.060 3.940 12 C -0.285 4.285 13 C 0.260 3.740 14 N -0.602 5.602 15 C 0.517 3.483 16 O -0.506 6.506 17 C 0.522 3.478 18 O -0.538 6.538 19 N -0.681 5.681 20 C 0.116 3.884 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.135 4.135 26 N -0.342 5.342 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.208 0.792 31 H 0.179 0.821 32 H 0.428 0.572 33 H 0.423 0.577 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.645 -25.745 -0.957 32.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.940 3.060 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.662 4.662 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.315 4.315 13 C 0.006 3.994 14 N -0.251 5.251 15 C 0.298 3.702 16 O -0.380 6.380 17 C 0.301 3.699 18 O -0.415 6.415 19 N -0.334 5.334 20 C -0.006 4.006 21 C -0.152 4.152 22 C -0.127 4.127 23 C -0.181 4.181 24 C -0.183 4.183 25 C -0.172 4.172 26 N -0.173 5.173 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.225 0.775 31 H 0.196 0.804 32 H 0.266 0.734 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.318 -23.114 -1.779 30.177 hybrid contribution -0.125 -2.049 0.275 2.071 sum 19.194 -25.163 -1.504 31.683 Atomic orbital electron populations 1.70948 1.07405 1.30222 1.47224 1.27231 0.96437 1.05984 0.92051 0.82890 0.74155 0.71237 0.77756 1.19920 1.19579 1.20302 1.22301 0.94710 0.92218 1.57008 0.93693 1.19471 0.86358 0.82651 0.97632 1.48638 1.23723 1.20228 1.19495 1.23269 1.00523 0.88441 0.96595 1.21778 1.01993 1.06715 1.01054 1.19349 0.91505 0.93630 0.94903 1.42140 1.28291 1.24365 1.30309 1.20399 0.84420 0.80459 0.84883 1.90682 1.62300 1.59819 1.25153 1.19436 0.83342 0.82676 0.84409 1.90802 1.63322 1.61167 1.26245 1.45746 1.32706 1.23223 1.31733 1.21689 0.86762 0.95667 0.96457 1.21774 0.98543 0.94865 1.00025 1.22482 0.97138 0.96347 0.96691 1.23081 0.99112 0.97652 0.98247 1.22863 0.99031 0.99440 0.97013 1.22938 1.01359 0.96362 0.96551 1.77342 1.04641 1.17945 1.17360 0.92894 0.92350 0.96424 0.77538 0.80362 0.73366 0.73898 0.90971 0.90925 0.89934 0.90068 0.88830 0.89840 0.91737 0.90108 0.91318 0.91228 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.65 21.45 0.29 -53.39 16 2 C -0.02 -0.95 5.46 84.65 0.46 -0.49 16 3 Si 1.12 49.89 29.90 68.60 2.05 51.94 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.62 -35.51 9.24 25.60 0.24 -35.27 16 8 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.26 13.13 5.57 85.64 0.48 13.60 16 10 N -0.34 -15.68 3.67 -351.84 -1.29 -16.97 16 11 C 0.06 2.24 11.43 83.51 0.95 3.19 16 12 C -0.28 -10.43 9.60 22.11 0.21 -10.22 16 13 C 0.26 10.34 8.10 133.40 1.08 11.42 16 14 N -0.60 -19.44 5.43 -308.90 -1.68 -21.12 16 15 C 0.52 14.35 7.85 87.24 0.69 15.04 16 16 O -0.51 -14.75 13.60 -3.35 -0.05 -14.79 16 17 C 0.52 12.14 7.89 87.24 0.69 12.83 16 18 O -0.54 -15.04 16.48 -3.28 -0.05 -15.09 16 19 N -0.68 -10.71 5.55 -464.53 -2.58 -13.29 16 20 C 0.12 1.41 5.67 86.38 0.49 1.90 16 21 C -0.11 -0.83 5.15 30.60 0.16 -0.67 16 22 C -0.11 -0.80 3.64 -10.27 -0.04 -0.84 16 23 C -0.14 -1.17 7.65 31.18 0.24 -0.93 16 24 C -0.15 -1.10 8.09 31.18 0.25 -0.84 16 25 C -0.13 -0.93 7.65 31.12 0.24 -0.69 16 26 N -0.34 -16.08 12.42 -54.54 -0.68 -16.76 16 27 H 0.26 15.00 7.22 -92.71 -0.67 14.33 16 28 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 29 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 30 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 31 H 0.18 5.90 5.91 -2.91 -0.02 5.89 16 32 H 0.43 12.96 8.29 -92.71 -0.77 12.19 16 33 H 0.42 5.29 7.94 -92.70 -0.74 4.55 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.08 0.51 7.88 -2.39 -0.02 0.49 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.66 7.92 -2.39 -0.02 0.64 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 Total: -1.00 -70.36 375.21 1.79 -68.57 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.37 Total: 22.87 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.14 Total: 8.03 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -5.93 Total: -121.53 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.10 Total: -29.89 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -70.36 1.79 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121047071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.671 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds