Wall clock time and date at job start Tue Mar 31 2020 13:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30861 * 125.82315 * 2 1 4 4 N 1.40085 * 108.32340 * 180.25718 * 3 2 1 5 5 C 1.46498 * 126.07562 * 179.68182 * 4 3 2 6 6 C 1.35876 * 107.84420 * 359.70904 * 4 3 2 7 7 C 1.50701 * 126.21242 * 179.97438 * 6 4 3 8 8 C 1.35588 * 107.57547 * 0.02562 * 6 4 3 9 9 O 1.36235 * 126.04834 * 179.97438 * 8 6 4 10 10 C 1.42901 * 116.99793 * 90.00048 * 9 8 6 11 11 C 1.50704 * 109.46992 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99911 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00015 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47362 * 90.00070 * 14 13 11 16 16 H 1.08000 * 119.99404 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99977 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00111 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47067 * 89.99510 * 19 17 15 21 21 H 1.48496 * 109.47228 * 210.00087 * 19 17 15 22 22 H 1.48505 * 109.46793 * 330.00302 * 19 17 15 23 23 C 1.46500 * 120.00329 * 359.97438 * 13 11 10 24 24 C 1.53006 * 109.47165 * 89.99700 * 23 13 11 25 25 C 1.47200 * 109.46869 * 180.02562 * 24 23 13 26 26 N 7.24070 * 79.50114 * 115.99164 * 2 1 3 27 27 H 1.09004 * 109.47229 * 270.21909 * 1 2 3 28 28 H 1.08999 * 109.47661 * 30.22339 * 1 2 3 29 29 H 1.09006 * 109.47197 * 150.22455 * 1 2 3 30 30 H 1.09004 * 109.47299 * 270.03305 * 5 4 3 31 31 H 1.08995 * 109.47726 * 30.03810 * 5 4 3 32 32 H 1.09006 * 109.47231 * 150.03909 * 5 4 3 33 33 H 1.08996 * 109.46947 * 270.03021 * 7 6 4 34 34 H 1.08997 * 109.46625 * 30.02736 * 7 6 4 35 35 H 1.09000 * 109.47010 * 150.02762 * 7 6 4 36 36 H 1.09004 * 109.47198 * 299.99572 * 10 9 8 37 37 H 1.08999 * 109.47144 * 59.99879 * 10 9 8 38 38 H 1.09000 * 109.47310 * 210.00180 * 14 13 11 39 39 H 1.09003 * 109.47191 * 329.99843 * 14 13 11 40 40 H 0.96999 * 119.99822 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47593 * 209.99694 * 23 13 11 42 42 H 1.08998 * 109.46846 * 330.00311 * 23 13 11 43 43 H 1.09000 * 109.46861 * 300.00443 * 24 23 13 44 44 H 1.08998 * 109.46740 * 60.00546 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0611 0.0000 4 7 3.6089 0.6398 -0.0060 5 6 4.7876 1.5097 -0.0145 6 6 3.6171 -0.7189 -0.0030 7 6 4.8383 -1.6019 -0.0079 8 6 2.3270 -1.1361 0.0040 9 8 1.9031 -2.4308 0.0084 10 6 1.7074 -3.0451 1.2837 11 6 1.2423 -4.4655 1.0911 12 8 1.0934 -4.9083 -0.0282 13 7 0.9926 -5.2440 2.1625 14 6 0.5399 -6.6246 1.9753 15 6 1.7349 -7.5400 1.9046 16 1 2.7320 -7.1338 1.9901 17 6 1.5555 -8.8958 1.7297 18 7 2.5984 -9.6945 1.6675 19 14 -0.1691 -9.5982 1.5810 20 1 -0.5767 -9.6116 0.1530 21 1 -0.1867 -10.9841 2.1139 22 1 -1.1148 -8.7570 2.3577 23 6 1.1740 -4.7096 3.5145 24 6 -0.1338 -4.0748 3.9917 25 6 0.0487 -3.5374 5.3499 26 7 0.1876 -3.1200 6.3994 27 1 -0.3634 0.0039 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3634 -0.8920 -0.5104 30 1 5.0742 1.7232 -1.0443 31 1 4.5546 2.4426 0.4986 32 1 5.6114 1.0104 0.4957 33 1 5.1272 -1.8166 -1.0367 34 1 5.6568 -1.0926 0.5006 35 1 4.6140 -2.5350 0.5088 36 1 2.6471 -3.0427 1.8362 37 1 0.9555 -2.4888 1.8434 38 1 -0.0923 -6.9166 2.8138 39 1 -0.0293 -6.6978 1.0485 40 1 2.4721 -10.6484 1.5448 41 1 1.4533 -5.5179 4.1903 42 1 1.9613 -3.9558 3.5046 43 1 -0.4131 -3.2665 3.3159 44 1 -0.9211 -4.8286 4.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126001574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:28 Heat of formation + Delta-G solvation = 37.710580 kcal Electronic energy + Delta-G solvation = -26890.225687 eV Core-core repulsion = 23038.663487 eV Total energy + Delta-G solvation = -3851.562200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51759 -39.50172 -37.53785 -36.83749 -35.31081 -34.21692 -32.84406 -31.69611 -31.05846 -29.69532 -29.32871 -27.36392 -26.40335 -25.19406 -24.09576 -22.36288 -20.52141 -19.92357 -18.75996 -17.82292 -17.64780 -16.86996 -16.54724 -16.31449 -15.76981 -15.57250 -15.34493 -14.69242 -14.43665 -14.17907 -13.85028 -13.77102 -13.58243 -13.55249 -13.28615 -12.99759 -12.87134 -12.67340 -12.56741 -12.52295 -12.47813 -12.22360 -12.12426 -11.97782 -11.80071 -11.60537 -11.17478 -11.09683 -10.89094 -10.57766 -10.23090 -9.72888 -9.60445 -9.23626 -9.10660 -8.63066 -8.36411 -7.95856 -6.12738 -4.12581 1.53839 2.11560 2.35804 2.63387 2.72376 3.14342 3.25166 3.29285 3.33027 3.37390 3.86312 4.19671 4.35683 4.40581 4.45585 4.75616 4.80543 4.85274 4.90843 4.96434 5.01457 5.08385 5.16168 5.20231 5.21348 5.28628 5.35807 5.42242 5.49705 5.67920 5.70433 5.72804 5.77382 5.91278 5.96838 6.23807 6.55144 6.71824 6.84382 7.13732 7.47893 7.49361 7.53689 7.58885 8.01655 8.40391 8.79539 8.90972 9.46593 11.00468 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003542 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.864927 B = 7903.302082 C = 8936.262801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.070 3.930 3 N -0.289 5.289 4 N -0.375 5.375 5 C 0.106 3.894 6 C 0.075 3.925 7 C -0.090 4.090 8 C -0.055 4.055 9 O -0.272 6.272 10 C 0.040 3.960 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.591 5.591 14 C 0.216 3.784 15 C -0.533 4.533 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.115 3.885 24 C -0.052 4.052 25 C 0.215 3.785 26 N -0.442 5.442 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 20.232 -0.104 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 N -0.112 5.112 4 N -0.159 5.159 5 C -0.035 4.035 6 C -0.052 4.052 7 C -0.149 4.149 8 C -0.110 4.110 9 O -0.184 6.184 10 C -0.039 4.039 11 C 0.298 3.702 12 O -0.381 6.381 13 N -0.324 5.324 14 C 0.096 3.904 15 C -0.571 4.571 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.011 4.011 24 C -0.093 4.093 25 C -0.103 4.103 26 N -0.119 5.119 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.746 21.623 0.649 21.645 hybrid contribution -0.651 -1.369 -0.201 1.529 sum 0.096 20.253 0.449 20.258 Atomic orbital electron populations 1.20211 0.86189 1.03884 1.03028 1.22709 0.97513 0.90243 0.99270 1.77331 0.86133 1.21999 1.25764 1.48189 1.05605 1.03800 1.58325 1.21833 0.83708 0.94554 1.03425 1.21357 0.97468 0.84853 1.01516 1.20463 0.92164 0.98232 1.04000 1.18009 0.89585 0.85318 1.18094 1.86358 1.85755 1.20469 1.25843 1.22664 1.01272 0.93054 0.86872 1.19875 0.78877 0.86147 0.85290 1.90732 1.49950 1.74119 1.23328 1.47810 1.66933 1.14101 1.03586 1.19750 0.96322 0.76682 0.97602 1.21303 0.93576 0.91324 1.50904 0.90618 1.24850 0.96818 0.96874 0.94371 1.69890 1.29561 1.04372 1.49528 0.86875 0.85049 0.78700 0.79198 1.19833 1.21137 1.18933 1.21369 0.94047 0.99800 0.85892 1.19913 1.02392 1.01984 0.85033 1.29127 0.93249 0.93149 0.94786 1.81305 1.08594 1.09816 1.12195 0.90549 0.90804 0.89588 0.90714 0.89179 0.89402 0.89592 0.91096 0.89173 0.90662 0.90740 0.94773 0.94107 0.92497 0.88206 0.90487 0.87471 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.43 36.00 0.38 -0.38 16 2 C 0.07 0.92 7.22 -82.30 -0.59 0.32 16 3 N -0.29 -3.82 12.57 33.72 0.42 -3.40 16 4 N -0.37 -4.21 4.04 -63.59 -0.26 -4.46 16 5 C 0.11 0.67 11.29 59.85 0.68 1.35 16 6 C 0.08 0.91 6.97 -81.75 -0.57 0.34 16 7 C -0.09 -0.85 10.10 36.01 0.36 -0.48 16 8 C -0.05 -0.77 6.15 -39.83 -0.24 -1.02 16 9 O -0.27 -4.33 9.70 -40.40 -0.39 -4.73 16 10 C 0.04 0.56 5.10 36.01 0.18 0.74 16 11 C 0.51 9.37 7.75 -10.99 -0.09 9.28 16 12 O -0.51 -11.89 16.08 -14.36 -0.23 -12.12 16 13 N -0.59 -10.24 2.46 -175.05 -0.43 -10.67 16 14 C 0.22 4.67 4.23 -5.19 -0.02 4.65 16 15 C -0.53 -14.21 9.94 -34.44 -0.34 -14.56 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 19 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 23 C 0.12 1.42 5.17 -4.04 -0.02 1.40 16 24 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 25 C 0.22 2.42 15.44 -20.70 -0.32 2.10 16 26 N -0.44 -6.23 18.55 42.23 0.78 -5.44 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.36 7.09 -51.93 -0.37 -0.01 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.46 7.12 -51.93 -0.37 0.09 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.92 7.40 -51.93 -0.38 0.53 16 37 H 0.07 0.80 7.19 -51.93 -0.37 0.43 16 38 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 43 H 0.11 0.79 7.22 -51.93 -0.37 0.41 16 44 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -37.24 382.88 -5.43 -42.67 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.32 Total: -2.56 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.88 Total: 5.04 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.29 Total: -49.79 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.62 Total: -16.84 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.24 -5.43 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126001574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.377 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds