Wall clock time and date at job start Tue Mar 31 2020 13:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30861 * 125.82315 * 2 1 4 4 N 1.40085 * 108.32340 * 180.25718 * 3 2 1 5 5 C 1.46498 * 126.07562 * 179.68182 * 4 3 2 6 6 C 1.35876 * 107.84420 * 359.70904 * 4 3 2 7 7 C 1.50701 * 126.21242 * 179.97438 * 6 4 3 8 8 C 1.35588 * 107.57547 * 0.02562 * 6 4 3 9 9 O 1.36235 * 126.04834 * 179.97438 * 8 6 4 10 10 C 1.42901 * 116.99793 * 90.00048 * 9 8 6 11 11 C 1.50704 * 109.46992 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99911 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00015 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47362 * 90.00070 * 14 13 11 16 16 H 1.08000 * 119.99404 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99977 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00111 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47067 * 89.99510 * 19 17 15 21 21 H 1.48496 * 109.47228 * 210.00087 * 19 17 15 22 22 H 1.48505 * 109.46793 * 330.00302 * 19 17 15 23 23 C 1.46500 * 120.00329 * 359.97438 * 13 11 10 24 24 C 1.53006 * 109.47165 * 89.99700 * 23 13 11 25 25 C 1.47200 * 109.46869 * 180.02562 * 24 23 13 26 26 N 7.24070 * 79.50114 * 115.99164 * 2 1 3 27 27 H 1.09004 * 109.47229 * 270.21909 * 1 2 3 28 28 H 1.08999 * 109.47661 * 30.22339 * 1 2 3 29 29 H 1.09006 * 109.47197 * 150.22455 * 1 2 3 30 30 H 1.09004 * 109.47299 * 270.03305 * 5 4 3 31 31 H 1.08995 * 109.47726 * 30.03810 * 5 4 3 32 32 H 1.09006 * 109.47231 * 150.03909 * 5 4 3 33 33 H 1.08996 * 109.46947 * 270.03021 * 7 6 4 34 34 H 1.08997 * 109.46625 * 30.02736 * 7 6 4 35 35 H 1.09000 * 109.47010 * 150.02762 * 7 6 4 36 36 H 1.09004 * 109.47198 * 299.99572 * 10 9 8 37 37 H 1.08999 * 109.47144 * 59.99879 * 10 9 8 38 38 H 1.09000 * 109.47310 * 210.00180 * 14 13 11 39 39 H 1.09003 * 109.47191 * 329.99843 * 14 13 11 40 40 H 0.96999 * 119.99822 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47593 * 209.99694 * 23 13 11 42 42 H 1.08998 * 109.46846 * 330.00311 * 23 13 11 43 43 H 1.09000 * 109.46861 * 300.00443 * 24 23 13 44 44 H 1.08998 * 109.46740 * 60.00546 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0611 0.0000 4 7 3.6089 0.6398 -0.0060 5 6 4.7876 1.5097 -0.0145 6 6 3.6171 -0.7189 -0.0030 7 6 4.8383 -1.6019 -0.0079 8 6 2.3270 -1.1361 0.0040 9 8 1.9031 -2.4308 0.0084 10 6 1.7074 -3.0451 1.2837 11 6 1.2423 -4.4655 1.0911 12 8 1.0934 -4.9083 -0.0282 13 7 0.9926 -5.2440 2.1625 14 6 0.5399 -6.6246 1.9753 15 6 1.7349 -7.5400 1.9046 16 1 2.7320 -7.1338 1.9901 17 6 1.5555 -8.8958 1.7297 18 7 2.5984 -9.6945 1.6675 19 14 -0.1691 -9.5982 1.5810 20 1 -0.5767 -9.6116 0.1530 21 1 -0.1867 -10.9841 2.1139 22 1 -1.1148 -8.7570 2.3577 23 6 1.1740 -4.7096 3.5145 24 6 -0.1338 -4.0748 3.9917 25 6 0.0487 -3.5374 5.3499 26 7 0.1876 -3.1200 6.3994 27 1 -0.3634 0.0039 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3634 -0.8920 -0.5104 30 1 5.0742 1.7232 -1.0443 31 1 4.5546 2.4426 0.4986 32 1 5.6114 1.0104 0.4957 33 1 5.1272 -1.8166 -1.0367 34 1 5.6568 -1.0926 0.5006 35 1 4.6140 -2.5350 0.5088 36 1 2.6471 -3.0427 1.8362 37 1 0.9555 -2.4888 1.8434 38 1 -0.0923 -6.9166 2.8138 39 1 -0.0293 -6.6978 1.0485 40 1 2.4721 -10.6484 1.5448 41 1 1.4533 -5.5179 4.1903 42 1 1.9613 -3.9558 3.5046 43 1 -0.4131 -3.2665 3.3159 44 1 -0.9211 -4.8286 4.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126001574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:27 Heat of formation + Delta-G solvation = 12.468973 kcal Electronic energy + Delta-G solvation = -26891.320245 eV Core-core repulsion = 23038.663487 eV Total energy + Delta-G solvation = -3852.656758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40692 -40.86578 -38.62983 -37.91130 -36.67629 -35.01326 -34.78474 -32.55822 -32.31367 -30.71612 -30.40783 -28.73054 -27.38830 -25.96926 -25.24485 -24.08837 -21.45454 -20.76564 -20.13949 -19.16341 -18.69821 -18.46669 -17.72341 -17.37810 -16.83653 -16.67372 -16.35738 -16.08857 -15.72279 -15.22164 -15.12505 -14.70723 -14.52119 -14.44411 -14.32339 -14.03850 -13.90640 -13.84365 -13.68492 -13.54755 -13.38910 -13.31923 -13.20273 -12.99832 -12.84984 -12.72822 -12.64586 -12.37225 -12.10436 -11.94047 -11.85453 -11.65644 -10.74245 -10.73250 -10.60458 -10.07383 -9.48572 -9.27891 -8.25008 -6.29595 0.65691 1.24897 1.41716 1.46396 1.52436 1.53022 1.65469 1.79298 1.85049 2.11913 2.39564 2.90341 3.11438 3.25152 3.61435 3.64111 3.75785 3.98990 4.02459 4.08528 4.21163 4.23956 4.29980 4.39881 4.49362 4.59019 4.62331 4.69028 4.77937 4.82358 4.86735 4.89990 4.93869 5.02499 5.03844 5.10799 5.11302 5.40477 5.54737 5.62166 5.95513 6.30761 6.49780 6.60594 6.62928 6.69815 6.73763 7.29152 7.42924 8.91786 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003542 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.864927 B = 7903.302082 C = 8936.262801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.060 3.940 3 N -0.311 5.311 4 N -0.372 5.372 5 C 0.094 3.906 6 C 0.077 3.923 7 C -0.089 4.089 8 C -0.087 4.087 9 O -0.298 6.298 10 C 0.049 3.951 11 C 0.509 3.491 12 O -0.571 6.571 13 N -0.589 5.589 14 C 0.223 3.777 15 C -0.534 4.534 16 H 0.031 0.969 17 C 0.009 3.991 18 N -0.949 5.949 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.224 1.224 23 C 0.109 3.891 24 C -0.039 4.039 25 C 0.245 3.755 26 N -0.491 5.491 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.138 0.862 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 22.176 0.938 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 N -0.136 5.136 4 N -0.156 5.156 5 C -0.045 4.045 6 C -0.052 4.052 7 C -0.147 4.147 8 C -0.142 4.142 9 O -0.211 6.211 10 C -0.029 4.029 11 C 0.297 3.703 12 O -0.449 6.449 13 N -0.321 5.321 14 C 0.101 3.899 15 C -0.573 4.573 16 H 0.049 0.951 17 C -0.189 4.189 18 N -0.590 5.590 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.147 1.147 23 C -0.016 4.016 24 C -0.080 4.080 25 C -0.073 4.073 26 N -0.169 5.169 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.155 0.845 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.448 23.638 1.752 23.707 hybrid contribution -0.098 -1.903 -0.562 1.987 sum -0.546 21.735 1.190 21.774 Atomic orbital electron populations 1.20282 0.84725 1.03907 1.04266 1.23068 0.98697 0.89879 0.98998 1.77281 0.87226 1.22381 1.26668 1.48601 1.06009 1.03986 1.57002 1.22251 0.82815 0.94649 1.04834 1.21697 0.97724 0.85574 1.00238 1.20536 0.92189 0.97551 1.04463 1.18274 0.90716 0.84704 1.20508 1.86314 1.86246 1.21669 1.26889 1.22648 1.03043 0.90236 0.86995 1.20677 0.77489 0.87788 0.84369 1.90699 1.52695 1.75714 1.25774 1.47740 1.66238 1.12570 1.05576 1.19462 0.94272 0.78173 0.97998 1.21627 0.93619 0.92322 1.49686 0.95076 1.25842 1.01445 0.97441 0.94138 1.70060 1.32430 1.04747 1.51727 0.85796 0.80141 0.78344 0.79182 1.20568 1.21018 1.14651 1.21601 0.96681 1.00270 0.83013 1.19887 1.00760 1.03149 0.84210 1.29258 0.91762 0.91744 0.94500 1.81353 1.10074 1.11715 1.13772 0.88641 0.89980 0.90294 0.89452 0.88295 0.86819 0.89292 0.87889 0.90475 0.88872 0.86927 0.91616 0.95631 0.92559 0.89111 0.88214 0.84474 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.43 71.23 0.74 -0.64 16 2 C 0.06 1.50 7.22 43.16 0.31 1.81 16 3 N -0.31 -7.80 12.57 -47.23 -0.59 -8.40 16 4 N -0.37 -7.63 4.04 -355.10 -1.43 -9.07 16 5 C 0.09 0.94 11.29 127.77 1.44 2.38 16 6 C 0.08 1.73 6.97 41.32 0.29 2.02 16 7 C -0.09 -1.52 10.10 71.24 0.72 -0.81 16 8 C -0.09 -2.36 6.15 22.11 0.14 -2.22 16 9 O -0.30 -9.35 9.70 -77.19 -0.75 -10.10 16 10 C 0.05 1.27 5.10 71.24 0.36 1.63 16 11 C 0.51 18.27 7.75 87.66 0.68 18.95 16 12 O -0.57 -27.34 16.08 16.00 0.26 -27.08 16 13 N -0.59 -19.59 2.46 -826.14 -2.03 -21.62 16 14 C 0.22 9.38 4.23 85.63 0.36 9.74 16 15 C -0.53 -29.07 9.94 25.60 0.25 -28.82 16 16 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 17 C 0.01 0.50 5.47 84.65 0.46 0.96 16 18 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 19 Si 0.94 41.72 27.47 68.60 1.88 43.61 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.22 -8.38 6.54 99.48 0.65 -7.73 16 23 C 0.11 2.40 5.17 86.38 0.45 2.84 16 24 C -0.04 -0.57 6.03 28.79 0.17 -0.40 16 25 C 0.24 4.75 15.44 89.42 1.38 6.13 16 26 N -0.49 -12.82 18.55 20.03 0.37 -12.45 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.54 7.09 -2.38 -0.02 0.52 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.04 7.12 -2.39 -0.02 1.02 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.07 7.40 -2.39 -0.02 2.05 16 37 H 0.11 2.02 7.19 -2.39 -0.02 2.00 16 38 H 0.07 2.38 7.13 -2.39 -0.02 2.36 16 39 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.09 2.21 8.07 -2.39 -0.02 2.20 16 42 H 0.10 1.76 6.44 -2.39 -0.02 1.75 16 43 H 0.14 1.30 7.22 -2.39 -0.02 1.29 16 44 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -86.53 382.88 6.73 -79.80 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.96 Total: 9.72 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 7.76 Total: 13.59 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -3.39 Total: -109.54 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.49 Total: -37.18 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.61 kcal Total: -86.53 6.73 -79.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126001574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.266 kcal (2) G-P(sol) polarization free energy of solvation -86.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds