Wall clock time and date at job start Tue Mar 31 2020 12:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46996 * 240.00018 * 3 2 1 5 5 H 1.48497 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47372 * 120.00125 * 3 2 1 7 7 C 1.37882 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99419 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99952 * 359.72158 * 7 2 1 10 10 N 1.46501 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97304 * 124.71983 * 10 9 7 12 12 C 1.35244 * 107.85739 * 179.89735 * 11 10 9 13 13 C 1.40400 * 107.86612 * 0.36435 * 12 11 10 14 14 N 1.40194 * 125.97361 * 179.74462 * 13 12 11 15 15 C 1.34779 * 119.99841 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00335 * 354.78107 * 15 14 13 17 17 N 1.34784 * 119.99950 * 174.77366 * 15 14 13 18 18 C 1.47146 * 120.97893 * 5.67504 * 17 15 14 19 19 C 1.52881 * 108.60619 * 230.49374 * 18 17 15 20 20 O 1.42959 * 109.30057 * 307.93550 * 19 18 17 21 21 C 1.42969 * 114.16363 * 62.44618 * 20 19 18 22 22 C 1.47145 * 120.97985 * 185.94805 * 17 15 14 23 23 H 1.09004 * 109.68527 * 249.16491 * 22 17 15 24 24 C 1.52997 * 109.68503 * 9.72748 * 22 17 15 25 25 C 1.53000 * 117.49775 * 254.76108 * 24 22 17 26 26 C 1.52997 * 117.49849 * 186.14006 * 24 22 17 27 27 N 1.31209 * 108.05847 * 359.77190 * 13 12 11 28 28 H 0.96993 * 120.00125 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47578 * 300.00022 * 9 7 2 30 30 H 1.08999 * 109.47205 * 60.00450 * 9 7 2 31 31 H 1.08003 * 126.07458 * 359.97438 * 11 10 9 32 32 H 1.08001 * 126.06827 * 180.13605 * 12 11 10 33 33 H 0.97000 * 120.00379 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.68523 * 350.27802 * 18 17 15 35 35 H 1.09002 * 109.68489 * 110.83471 * 18 17 15 36 36 H 1.09001 * 109.58605 * 187.92348 * 19 18 17 37 37 H 1.09002 * 109.40460 * 67.84577 * 19 18 17 38 38 H 1.08999 * 109.50911 * 177.49434 * 21 20 19 39 39 H 1.09003 * 109.51201 * 57.34377 * 21 20 19 40 40 H 1.08995 * 115.55203 * 40.46643 * 24 22 17 41 41 H 1.09007 * 117.49734 * 359.97438 * 25 24 22 42 42 H 1.08993 * 117.50268 * 145.02018 * 25 24 22 43 43 H 1.09004 * 117.49970 * 214.97934 * 26 24 22 44 44 H 1.09001 * 117.50019 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 0.0052 10 7 2.2031 -3.6127 0.0040 11 6 2.2489 -4.6175 0.9039 12 6 3.2634 -5.4409 0.5549 13 6 3.8673 -4.9154 -0.5986 14 7 4.9616 -5.4671 -1.2795 15 6 5.5283 -6.6057 -0.8336 16 8 5.1531 -7.1032 0.2106 17 7 6.5108 -7.1931 -1.5451 18 6 7.0668 -6.5476 -2.7449 19 6 7.0605 -7.5597 -3.8906 20 8 7.7019 -8.7631 -3.4616 21 6 7.0455 -9.4209 -2.3751 22 6 7.0550 -8.5014 -1.1485 23 1 8.0767 -8.3803 -0.7885 24 6 6.1869 -9.1072 -0.0438 25 6 6.7431 -9.0891 1.3814 26 6 6.6725 -10.4052 0.6044 27 7 3.2288 -3.8174 -0.9277 28 1 -0.4850 0.8400 -0.0004 29 1 0.6281 -2.5552 0.8979 30 1 0.6207 -2.5587 -0.8820 31 1 1.5912 -4.7427 1.7514 32 1 3.5593 -6.3407 1.0737 33 1 5.3109 -5.0293 -2.0715 34 1 6.4563 -5.6858 -3.0145 35 1 8.0897 -6.2264 -2.5484 36 1 7.5956 -7.1469 -4.7458 37 1 6.0312 -7.7775 -4.1758 38 1 7.5699 -10.3471 -2.1400 39 1 6.0159 -9.6453 -2.6539 40 1 5.1117 -8.9774 -0.1664 41 1 7.7277 -8.6461 1.5319 42 1 6.0338 -8.9474 2.1968 43 1 5.9167 -11.1293 0.9085 44 1 7.6102 -10.8279 0.2434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132469335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:23 Heat of formation + Delta-G solvation = 67.639281 kcal Electronic energy + Delta-G solvation = -27160.776693 eV Core-core repulsion = 23310.512299 eV Total energy + Delta-G solvation = -3850.264394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19329 -40.22629 -38.58425 -37.26468 -34.96159 -34.61792 -33.28847 -31.46149 -30.84268 -29.29937 -28.12617 -26.55118 -25.00116 -23.42767 -22.67944 -22.14055 -21.45571 -21.00616 -19.99890 -19.32772 -17.94929 -16.93466 -16.58383 -16.46754 -16.35576 -15.75428 -15.63898 -15.31352 -15.05121 -14.52283 -14.38796 -14.24692 -14.12560 -13.58025 -13.44413 -12.80403 -12.68455 -12.32616 -12.24483 -11.87635 -11.79048 -11.71031 -11.49776 -11.22451 -11.02039 -10.87532 -10.66516 -10.56759 -10.36037 -10.25761 -10.23533 -9.88641 -9.50165 -9.07599 -8.75590 -8.63045 -8.10549 -7.41870 -6.24592 -4.29767 2.17452 2.63947 3.07365 3.25020 3.27916 3.28359 3.33913 3.40335 3.80279 3.81500 4.04799 4.31214 4.32246 4.54202 4.61811 4.66121 4.78540 4.86416 4.97847 5.10256 5.11638 5.18906 5.27857 5.34290 5.40469 5.50193 5.56157 5.59792 5.80548 5.91100 6.01947 6.13499 6.22321 6.42720 6.52771 6.59442 6.69853 6.80184 6.95212 7.07728 7.48047 7.68419 7.78013 7.92868 8.06035 8.54994 8.65437 8.80158 9.35790 10.84061 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.002822 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.934741 B = 9919.308372 C =10721.598068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.275 3.725 14 N -0.645 5.645 15 C 0.717 3.283 16 O -0.546 6.546 17 N -0.629 5.629 18 C 0.074 3.926 19 C 0.047 3.953 20 O -0.379 6.379 21 C 0.054 3.946 22 C 0.165 3.835 23 H 0.078 0.922 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.197 4.197 27 N -0.309 5.309 28 H 0.268 0.732 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.403 0.597 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.016 -19.038 -4.427 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.298 5.298 15 C 0.418 3.582 16 O -0.420 6.420 17 N -0.369 5.369 18 C -0.050 4.050 19 C -0.031 4.031 20 O -0.297 6.297 21 C -0.024 4.024 22 C 0.062 3.938 23 H 0.096 0.904 24 C -0.147 4.147 25 C -0.190 4.190 26 C -0.234 4.234 27 N -0.140 5.140 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.561 -18.278 -4.576 23.215 hybrid contribution 0.386 0.863 0.262 0.981 sum 13.947 -17.415 -4.313 22.724 Atomic orbital electron populations 1.69908 1.06038 1.27735 1.49720 1.24944 0.94981 0.99528 0.94604 0.86386 0.79382 0.81803 0.78923 1.19950 1.21038 1.20038 1.21223 0.93955 0.89426 1.52132 0.91380 1.19723 0.85608 0.81281 0.99217 1.49052 1.23402 1.19938 1.17811 1.22551 1.00355 0.90359 0.96648 1.21483 1.02147 1.06470 1.01600 1.18789 0.90614 0.94067 0.94370 1.41681 1.31628 1.25304 1.31140 1.15527 0.79327 0.80072 0.83228 1.90887 1.64837 1.63884 1.22424 1.47266 1.39243 1.21377 1.28966 1.22323 1.00523 0.96457 0.85708 1.22917 0.98801 0.85237 0.96136 1.87972 1.52558 1.38113 1.51059 1.23053 0.98522 0.95169 0.85656 1.21315 0.96853 0.81257 0.94409 0.90437 1.22293 1.00827 0.98454 0.93114 1.22761 1.01836 0.99151 0.95217 1.23147 1.02822 0.91571 1.05897 1.77321 1.03955 1.16210 1.16488 0.92268 0.92588 0.93756 0.81594 0.82219 0.75994 0.89206 0.90099 0.87352 0.92305 0.87488 0.92196 0.85500 0.89633 0.88715 0.88848 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.59 9.61 -39.83 -0.38 -5.98 16 13 C 0.28 5.49 8.11 -154.36 -1.25 4.24 16 14 N -0.65 -10.08 5.37 -15.50 -0.08 -10.16 16 15 C 0.72 10.45 8.07 -86.91 -0.70 9.75 16 16 O -0.55 -9.02 9.25 5.28 0.05 -8.97 16 17 N -0.63 -6.93 3.03 -170.68 -0.52 -7.45 16 18 C 0.07 0.60 6.61 -3.75 -0.02 0.57 16 19 C 0.05 0.34 6.97 37.10 0.26 0.60 16 20 O -0.38 -3.43 10.74 -35.23 -0.38 -3.81 16 21 C 0.05 0.44 6.13 37.31 0.23 0.67 16 22 C 0.17 1.62 3.24 -67.42 -0.22 1.40 16 23 H 0.08 0.75 7.97 -51.93 -0.41 0.33 16 24 C -0.13 -1.38 3.20 -90.62 -0.29 -1.67 16 25 C -0.15 -1.63 9.51 -26.73 -0.25 -1.89 16 26 C -0.20 -1.68 10.06 -26.73 -0.27 -1.95 16 27 N -0.31 -7.07 12.42 31.44 0.39 -6.68 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16 32 H 0.16 3.02 5.93 -52.49 -0.31 2.71 16 33 H 0.40 5.26 6.33 -40.82 -0.26 5.01 16 34 H 0.09 0.65 5.66 -51.93 -0.29 0.36 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.70 8.12 -51.93 -0.42 0.27 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 1.69 6.39 -51.93 -0.33 1.36 16 41 H 0.09 0.89 8.10 -51.93 -0.42 0.46 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.11 358.39 -9.42 -41.53 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.22 Total: 6.37 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.55 Total: -0.30 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.54 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.33 Total: -12.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.11 -9.42 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132469335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.166 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds