Wall clock time and date at job start Tue Mar 31 2020 12:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46996 * 240.00018 * 3 2 1 5 5 H 1.48497 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47372 * 120.00125 * 3 2 1 7 7 C 1.37882 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99419 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99952 * 359.72158 * 7 2 1 10 10 N 1.46501 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97304 * 124.71983 * 10 9 7 12 12 C 1.35244 * 107.85739 * 179.89735 * 11 10 9 13 13 C 1.40400 * 107.86612 * 0.36435 * 12 11 10 14 14 N 1.40194 * 125.97361 * 179.74462 * 13 12 11 15 15 C 1.34779 * 119.99841 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00335 * 354.78107 * 15 14 13 17 17 N 1.34784 * 119.99950 * 174.77366 * 15 14 13 18 18 C 1.47146 * 120.97893 * 5.67504 * 17 15 14 19 19 C 1.52881 * 108.60619 * 230.49374 * 18 17 15 20 20 O 1.42959 * 109.30057 * 307.93550 * 19 18 17 21 21 C 1.42969 * 114.16363 * 62.44618 * 20 19 18 22 22 C 1.47145 * 120.97985 * 185.94805 * 17 15 14 23 23 H 1.09004 * 109.68527 * 249.16491 * 22 17 15 24 24 C 1.52997 * 109.68503 * 9.72748 * 22 17 15 25 25 C 1.53000 * 117.49775 * 254.76108 * 24 22 17 26 26 C 1.52997 * 117.49849 * 186.14006 * 24 22 17 27 27 N 1.31209 * 108.05847 * 359.77190 * 13 12 11 28 28 H 0.96993 * 120.00125 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47578 * 300.00022 * 9 7 2 30 30 H 1.08999 * 109.47205 * 60.00450 * 9 7 2 31 31 H 1.08003 * 126.07458 * 359.97438 * 11 10 9 32 32 H 1.08001 * 126.06827 * 180.13605 * 12 11 10 33 33 H 0.97000 * 120.00379 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.68523 * 350.27802 * 18 17 15 35 35 H 1.09002 * 109.68489 * 110.83471 * 18 17 15 36 36 H 1.09001 * 109.58605 * 187.92348 * 19 18 17 37 37 H 1.09002 * 109.40460 * 67.84577 * 19 18 17 38 38 H 1.08999 * 109.50911 * 177.49434 * 21 20 19 39 39 H 1.09003 * 109.51201 * 57.34377 * 21 20 19 40 40 H 1.08995 * 115.55203 * 40.46643 * 24 22 17 41 41 H 1.09007 * 117.49734 * 359.97438 * 25 24 22 42 42 H 1.08993 * 117.50268 * 145.02018 * 25 24 22 43 43 H 1.09004 * 117.49970 * 214.97934 * 26 24 22 44 44 H 1.09001 * 117.50019 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 0.0052 10 7 2.2031 -3.6127 0.0040 11 6 2.2489 -4.6175 0.9039 12 6 3.2634 -5.4409 0.5549 13 6 3.8673 -4.9154 -0.5986 14 7 4.9616 -5.4671 -1.2795 15 6 5.5283 -6.6057 -0.8336 16 8 5.1531 -7.1032 0.2106 17 7 6.5108 -7.1931 -1.5451 18 6 7.0668 -6.5476 -2.7449 19 6 7.0605 -7.5597 -3.8906 20 8 7.7019 -8.7631 -3.4616 21 6 7.0455 -9.4209 -2.3751 22 6 7.0550 -8.5014 -1.1485 23 1 8.0767 -8.3803 -0.7885 24 6 6.1869 -9.1072 -0.0438 25 6 6.7431 -9.0891 1.3814 26 6 6.6725 -10.4052 0.6044 27 7 3.2288 -3.8174 -0.9277 28 1 -0.4850 0.8400 -0.0004 29 1 0.6281 -2.5552 0.8979 30 1 0.6207 -2.5587 -0.8820 31 1 1.5912 -4.7427 1.7514 32 1 3.5593 -6.3407 1.0737 33 1 5.3109 -5.0293 -2.0715 34 1 6.4563 -5.6858 -3.0145 35 1 8.0897 -6.2264 -2.5484 36 1 7.5956 -7.1469 -4.7458 37 1 6.0312 -7.7775 -4.1758 38 1 7.5699 -10.3471 -2.1400 39 1 6.0159 -9.6453 -2.6539 40 1 5.1117 -8.9774 -0.1664 41 1 7.7277 -8.6461 1.5319 42 1 6.0338 -8.9474 2.1968 43 1 5.9167 -11.1293 0.9085 44 1 7.6102 -10.8279 0.2434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132469335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:22 Heat of formation + Delta-G solvation = 47.904128 kcal Electronic energy + Delta-G solvation = -27161.632473 eV Core-core repulsion = 23310.512299 eV Total energy + Delta-G solvation = -3851.120174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39269 -41.56847 -39.53988 -38.07981 -36.14701 -35.85648 -35.10978 -32.74062 -32.04081 -30.92383 -29.14804 -28.26684 -25.75547 -25.05866 -23.82912 -22.95768 -22.39703 -22.35395 -21.34842 -20.56988 -18.98967 -18.69011 -18.16047 -17.60335 -17.09801 -16.97006 -16.64290 -16.38472 -16.19301 -15.94132 -15.64900 -15.36316 -15.17662 -14.77891 -14.51038 -14.30570 -14.17249 -13.76827 -13.63069 -13.32396 -12.95228 -12.72832 -12.59777 -12.45210 -12.28116 -12.21069 -12.10511 -11.88821 -11.64957 -11.46577 -11.33930 -11.22413 -11.05982 -10.72161 -10.12121 -9.76618 -9.59203 -9.03043 -8.32932 -6.47403 1.01142 1.10748 1.37984 1.39845 1.48667 1.69578 1.95166 2.34494 2.39300 2.72618 2.81053 2.98509 3.04000 3.60161 3.78505 3.90353 3.96815 4.03177 4.10612 4.18991 4.20592 4.27036 4.41527 4.48791 4.58326 4.74726 4.75826 4.81737 4.86745 4.87666 4.91885 4.95080 5.01816 5.09773 5.14762 5.34427 5.38327 5.52220 5.56500 5.67668 5.83329 5.97437 6.07526 6.29214 6.57454 6.66627 7.10879 7.22541 7.39498 8.74287 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.002822 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.934741 B = 9919.308372 C =10721.598068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.274 3.726 10 N -0.345 5.345 11 C 0.055 3.945 12 C -0.289 4.289 13 C 0.286 3.714 14 N -0.641 5.641 15 C 0.712 3.288 16 O -0.568 6.568 17 N -0.622 5.622 18 C 0.068 3.932 19 C 0.048 3.952 20 O -0.388 6.388 21 C 0.059 3.941 22 C 0.164 3.836 23 H 0.085 0.915 24 C -0.137 4.137 25 C -0.169 4.169 26 C -0.168 4.168 27 N -0.349 5.349 28 H 0.273 0.727 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.199 0.801 32 H 0.168 0.832 33 H 0.414 0.586 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 -19.876 -4.952 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.155 3.845 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.320 4.320 13 C 0.030 3.970 14 N -0.295 5.295 15 C 0.413 3.587 16 O -0.444 6.444 17 N -0.361 5.361 18 C -0.055 4.055 19 C -0.030 4.030 20 O -0.306 6.306 21 C -0.019 4.019 22 C 0.061 3.939 23 H 0.103 0.897 24 C -0.156 4.156 25 C -0.206 4.206 26 C -0.205 4.205 27 N -0.181 5.181 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.216 0.784 32 H 0.185 0.815 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.524 -19.154 -5.130 25.183 hybrid contribution -0.151 0.986 0.419 1.082 sum 15.373 -18.168 -4.711 24.261 Atomic orbital electron populations 1.69987 1.07220 1.28846 1.49905 1.25740 0.95839 1.02711 0.93874 0.85411 0.78301 0.77868 0.78926 1.19772 1.19772 1.19525 1.21379 0.93370 0.91020 1.52900 0.92979 1.19312 0.85665 0.81502 0.98040 1.48803 1.24069 1.20537 1.19285 1.23144 1.00527 0.89044 0.96635 1.21659 1.02103 1.06627 1.01656 1.19072 0.90735 0.92971 0.94174 1.41723 1.30678 1.25735 1.31343 1.15715 0.79917 0.79684 0.83336 1.90876 1.65748 1.64253 1.23565 1.47360 1.37922 1.21651 1.29176 1.22583 1.01147 0.96910 0.84840 1.23044 0.99072 0.84505 0.96349 1.87968 1.52923 1.38640 1.51079 1.23082 0.98651 0.95437 0.84682 1.21480 0.96651 0.80764 0.94972 0.89708 1.22111 0.99416 1.00634 0.93423 1.22738 1.01520 1.01501 0.94833 1.23204 1.03690 0.90427 1.03196 1.77238 1.05087 1.18058 1.17677 0.91819 0.92465 0.96085 0.78404 0.81469 0.74686 0.88555 0.88729 0.84781 0.92665 0.85277 0.92740 0.88407 0.89359 0.90534 0.88308 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 2 C 0.02 1.04 5.46 84.66 0.46 1.50 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.12 9.24 25.60 0.24 -30.88 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.29 6.26 85.63 0.54 14.83 16 10 N -0.34 -16.32 3.67 -351.84 -1.29 -17.61 16 11 C 0.05 2.19 11.43 83.52 0.96 3.14 16 12 C -0.29 -11.35 9.61 22.11 0.21 -11.14 16 13 C 0.29 11.49 8.11 133.31 1.08 12.57 16 14 N -0.64 -19.85 5.37 -321.22 -1.72 -21.57 16 15 C 0.71 20.45 8.07 179.05 1.44 21.90 16 16 O -0.57 -18.86 9.25 -4.00 -0.04 -18.90 16 17 N -0.62 -12.94 3.03 -812.18 -2.46 -15.40 16 18 C 0.07 0.97 6.61 86.22 0.57 1.54 16 19 C 0.05 0.58 6.97 71.94 0.50 1.08 16 20 O -0.39 -5.99 10.74 -148.98 -1.60 -7.59 16 21 C 0.06 0.84 6.13 72.08 0.44 1.28 16 22 C 0.16 2.93 3.24 44.97 0.15 3.08 16 23 H 0.09 1.43 7.97 -2.38 -0.02 1.41 16 24 C -0.14 -2.83 3.20 -10.80 -0.03 -2.86 16 25 C -0.17 -3.52 9.51 30.59 0.29 -3.23 16 26 C -0.17 -2.52 10.06 30.59 0.31 -2.22 16 27 N -0.35 -16.34 12.42 -54.44 -0.68 -17.02 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.20 6.27 8.06 -2.91 -0.02 6.25 16 32 H 0.17 6.33 5.93 -2.91 -0.02 6.31 16 33 H 0.41 10.60 6.33 -92.71 -0.59 10.01 16 34 H 0.10 1.24 5.66 -2.39 -0.01 1.23 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.13 1.25 8.12 -2.39 -0.02 1.23 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 2.64 6.39 -2.39 -0.02 2.63 16 41 H 0.09 1.76 8.10 -2.38 -0.02 1.74 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.91 358.39 2.11 -67.80 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.44 Total: 26.11 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 7.15 Total: 10.58 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.86 Total: -123.68 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.64 Total: -26.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.91 2.11 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132469335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.703 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds