Wall clock time and date at job start Tue Mar 31 2020 12:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21253 * 120.00270 * 2 1 4 4 C 1.47170 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.39868 * 120.16852 * 274.41060 * 4 2 1 6 6 C 1.50698 * 120.09271 * 359.97438 * 5 4 2 7 7 C 1.37868 * 119.82099 * 179.97438 * 5 4 2 8 8 C 1.38426 * 120.17756 * 359.74239 * 7 5 4 9 9 C 1.50694 * 119.83274 * 180.27792 * 8 7 5 10 10 C 1.38389 * 120.34202 * 0.51537 * 8 7 5 11 11 C 1.50701 * 119.90877 * 179.76570 * 10 8 7 12 12 S 1.81402 * 109.46942 * 269.71732 * 11 10 8 13 13 C 1.81398 * 103.00012 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47073 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46813 * 180.02562 * 14 13 12 16 16 C 1.50711 * 109.46790 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99698 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99778 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00021 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 89.99675 * 20 18 16 22 22 H 1.48496 * 109.47065 * 209.99512 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99885 * 20 18 16 24 24 C 1.37907 * 120.17191 * 359.48277 * 10 8 7 25 25 C 1.50700 * 120.08531 * 180.27658 * 24 10 8 26 26 H 1.08996 * 109.46631 * 275.01450 * 1 2 3 27 27 H 1.08997 * 109.46681 * 35.01330 * 1 2 3 28 28 H 1.08992 * 109.46904 * 155.01647 * 1 2 3 29 29 H 1.09005 * 109.46750 * 84.50991 * 6 5 4 30 30 H 1.08994 * 109.47514 * 204.50872 * 6 5 4 31 31 H 1.09002 * 109.46836 * 324.51383 * 6 5 4 32 32 H 1.08008 * 119.91241 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46966 * 270.23954 * 9 8 7 34 34 H 1.09007 * 109.46694 * 30.23715 * 9 8 7 35 35 H 1.08999 * 109.47463 * 150.22959 * 9 8 7 36 36 H 1.08998 * 109.46637 * 149.72586 * 11 10 8 37 37 H 1.08994 * 109.47093 * 29.72390 * 11 10 8 38 38 H 1.08996 * 109.47312 * 300.00636 * 13 12 11 39 39 H 1.09001 * 109.46735 * 60.00012 * 13 12 11 40 40 H 1.08999 * 109.47117 * 299.99842 * 14 13 12 41 41 H 1.09001 * 109.47353 * 60.00722 * 14 13 12 42 42 H 1.08999 * 109.47193 * 299.99257 * 15 14 13 43 43 H 1.09000 * 109.47384 * 60.00321 * 15 14 13 44 44 H 0.96995 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47144 * 84.77927 * 25 24 10 46 46 H 1.09003 * 109.47379 * 204.78110 * 25 24 10 47 47 H 1.09002 * 109.47206 * 324.78093 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 -0.0006 5 6 2.5138 -1.9303 1.2048 6 6 2.0534 -1.3335 2.5097 7 6 3.2033 -3.1241 1.1959 8 6 3.6225 -3.6767 -0.0021 9 6 4.3700 -4.9851 -0.0033 10 6 3.3629 -3.0312 -1.1984 11 6 3.8283 -3.6390 -2.4965 12 16 5.4922 -3.0306 -2.8866 13 6 5.8720 -3.8587 -4.4553 14 6 7.2672 -3.4436 -4.9263 15 6 7.5873 -4.1415 -6.2497 16 6 8.9619 -3.7331 -6.7134 17 1 9.5482 -3.0442 -6.1234 18 6 9.4704 -4.2380 -7.8913 19 7 8.7561 -5.0764 -8.6100 20 14 11.1738 -3.7312 -8.4664 21 1 12.1822 -4.6728 -7.9171 22 1 11.2247 -3.7616 -9.9502 23 1 11.4687 -2.3563 -7.9891 24 6 2.6743 -1.8364 -1.2062 25 6 2.3872 -1.1384 -2.5105 26 1 -0.3632 0.0898 1.0237 27 1 -0.3632 0.8417 -0.5896 28 1 -0.3633 -0.9314 -0.4340 29 1 1.0195 -1.6235 2.6970 30 1 2.6854 -1.6985 3.3193 31 1 2.1222 -0.2469 2.4566 32 1 3.4130 -3.6320 2.1258 33 1 5.4398 -4.7924 0.0776 34 1 4.0448 -5.5901 0.8432 35 1 4.1661 -5.5193 -0.9312 36 1 3.1423 -3.3582 -3.2957 37 1 3.8512 -4.7245 -2.4019 38 1 5.8437 -4.9389 -4.3121 39 1 5.1347 -3.5722 -5.2052 40 1 7.2959 -2.3634 -5.0694 41 1 8.0043 -3.7305 -4.1763 42 1 7.5586 -5.2218 -6.1070 43 1 6.8502 -3.8543 -6.9996 44 1 9.1140 -5.4319 -9.4384 45 1 1.4777 -1.5485 -2.9496 46 1 2.2546 -0.0716 -2.3303 47 1 3.2217 -1.2901 -3.1952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161100513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:44 Heat of formation + Delta-G solvation = -51.984735 kcal Electronic energy + Delta-G solvation = -23706.302036 eV Core-core repulsion = 20364.850819 eV Total energy + Delta-G solvation = -3341.451217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75186 -38.88484 -34.81565 -34.45162 -33.93388 -32.02544 -30.60722 -29.82113 -28.15855 -27.49869 -27.27580 -25.28131 -23.32513 -22.18475 -20.77962 -20.27139 -19.31228 -17.01900 -16.81949 -16.36197 -15.84733 -15.48596 -14.88493 -14.87118 -14.67929 -14.52129 -14.43462 -14.02057 -13.77603 -13.47577 -13.35439 -13.19613 -13.08612 -12.86554 -12.72523 -12.50095 -12.48103 -12.38592 -11.90542 -11.82236 -11.70587 -11.53749 -11.39651 -11.16493 -10.89657 -10.87491 -10.53628 -10.01587 -9.85458 -9.79662 -9.30408 -9.11935 -8.78785 -8.58179 -8.37279 -7.43468 -6.02389 -4.04741 0.77897 0.98560 1.55313 2.03076 2.86419 3.31865 3.37940 3.38536 3.42245 3.70791 4.34111 4.41422 4.45189 4.49583 4.66071 4.73301 4.81436 4.95684 5.03989 5.07576 5.16295 5.18774 5.23034 5.29266 5.33632 5.34990 5.40433 5.49564 5.49950 5.52883 5.59083 5.62661 5.63116 5.71874 5.95471 6.02098 6.12029 6.14453 6.16856 6.38042 6.55050 6.66770 6.71498 7.01489 7.10532 7.62639 7.74744 7.96637 8.38645 9.01701 9.59519 11.08958 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.002254 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.684533 B =12420.732889 C =12994.585231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.411 3.589 3 O -0.447 6.447 4 C -0.166 4.166 5 C -0.048 4.048 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.044 4.044 9 C -0.121 4.121 10 C -0.074 4.074 11 C -0.056 4.056 12 S -0.262 6.262 13 C -0.077 4.077 14 C -0.094 4.094 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.025 4.025 25 C -0.132 4.132 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.353 3.385 21.487 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.286 3.714 3 O -0.320 6.320 4 C -0.167 4.167 5 C -0.049 4.049 6 C -0.178 4.178 7 C -0.145 4.145 8 C -0.046 4.046 9 C -0.178 4.178 10 C -0.075 4.075 11 C -0.203 4.203 12 S -0.031 6.031 13 C -0.225 4.225 14 C -0.133 4.133 15 C -0.011 4.011 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.027 4.027 25 C -0.188 4.188 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.387 4.545 21.868 29.575 hybrid contribution 0.152 -0.792 -1.119 1.379 sum -19.234 3.753 20.749 28.541 Atomic orbital electron populations 1.22290 0.93504 1.05040 1.04821 1.22504 0.91736 0.87642 0.69560 1.90593 1.72368 1.34177 1.34821 1.20085 1.04836 0.98035 0.93696 1.19775 0.97065 0.94390 0.93635 1.20885 1.01849 1.00925 0.94145 1.20762 1.00396 0.95773 0.97616 1.19896 0.96025 0.96568 0.92078 1.20932 1.00685 0.93320 1.02838 1.18853 1.00000 0.95248 0.93446 1.22333 0.97547 1.02951 0.97439 1.87189 1.18683 1.65171 1.32106 1.23659 1.03300 1.01647 0.93856 1.21458 0.90871 1.00947 1.00063 1.19103 0.96651 0.95534 0.89815 1.21227 1.01132 1.27071 1.06416 0.92552 1.25022 0.97685 0.95105 0.96644 1.69960 1.37304 1.31476 1.14815 0.86571 0.84495 0.79067 0.77769 1.20620 1.21204 1.19809 1.19626 0.95450 0.93553 0.94082 1.21022 1.03285 0.99962 0.94554 0.88427 0.89190 0.89526 0.90618 0.90759 0.91577 0.85411 0.89918 0.91459 0.91002 0.89286 0.88938 0.90577 0.90587 0.92407 0.92405 0.96464 0.96450 0.92973 0.90561 0.91510 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.26 36.01 0.37 -0.84 16 2 C 0.41 4.18 3.71 -30.68 -0.11 4.06 16 3 O -0.45 -6.16 17.72 5.58 0.10 -6.06 16 4 C -0.17 -1.79 5.52 -105.07 -0.58 -2.37 16 5 C -0.05 -0.46 5.92 -104.15 -0.62 -1.07 16 6 C -0.12 -0.84 9.53 36.00 0.34 -0.50 16 7 C -0.13 -1.20 9.31 -39.65 -0.37 -1.57 16 8 C -0.04 -0.46 5.89 -104.50 -0.62 -1.08 16 9 C -0.12 -1.09 9.59 36.00 0.35 -0.74 16 10 C -0.07 -0.86 5.13 -104.69 -0.54 -1.40 16 11 C -0.06 -0.66 4.93 36.01 0.18 -0.48 16 12 S -0.26 -4.02 21.33 -107.50 -2.29 -6.32 16 13 C -0.08 -1.30 5.94 37.15 0.22 -1.08 16 14 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 15 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 16 C -0.52 -14.80 9.11 -34.43 -0.31 -15.12 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.03 -0.29 5.92 -104.15 -0.62 -0.91 16 25 C -0.13 -1.39 8.72 36.01 0.31 -1.07 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.07 0.51 7.30 -51.93 -0.38 0.13 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16 35 H 0.07 0.64 5.92 -51.93 -0.31 0.33 16 36 H 0.09 0.97 6.79 -51.92 -0.35 0.62 16 37 H 0.09 0.99 5.91 -51.93 -0.31 0.68 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.73 6.80 -51.93 -0.35 0.37 16 47 H 0.09 1.04 6.64 -51.93 -0.34 0.69 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -32.63 395.53 -10.80 -43.43 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.92 Total: -3.48 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -2.37 Total: -24.17 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: 0.10 Total: -6.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.29 Total: -6.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.63 -10.80 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161100513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.556 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds