Wall clock time and date at job start Tue Mar 31 2020 12:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21253 * 120.00270 * 2 1 4 4 C 1.47170 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.39868 * 120.16852 * 274.41060 * 4 2 1 6 6 C 1.50698 * 120.09271 * 359.97438 * 5 4 2 7 7 C 1.37868 * 119.82099 * 179.97438 * 5 4 2 8 8 C 1.38426 * 120.17756 * 359.74239 * 7 5 4 9 9 C 1.50694 * 119.83274 * 180.27792 * 8 7 5 10 10 C 1.38389 * 120.34202 * 0.51537 * 8 7 5 11 11 C 1.50701 * 119.90877 * 179.76570 * 10 8 7 12 12 S 1.81402 * 109.46942 * 269.71732 * 11 10 8 13 13 C 1.81398 * 103.00012 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47073 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46813 * 180.02562 * 14 13 12 16 16 C 1.50711 * 109.46790 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99698 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99778 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00021 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 89.99675 * 20 18 16 22 22 H 1.48496 * 109.47065 * 209.99512 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99885 * 20 18 16 24 24 C 1.37907 * 120.17191 * 359.48277 * 10 8 7 25 25 C 1.50700 * 120.08531 * 180.27658 * 24 10 8 26 26 H 1.08996 * 109.46631 * 275.01450 * 1 2 3 27 27 H 1.08997 * 109.46681 * 35.01330 * 1 2 3 28 28 H 1.08992 * 109.46904 * 155.01647 * 1 2 3 29 29 H 1.09005 * 109.46750 * 84.50991 * 6 5 4 30 30 H 1.08994 * 109.47514 * 204.50872 * 6 5 4 31 31 H 1.09002 * 109.46836 * 324.51383 * 6 5 4 32 32 H 1.08008 * 119.91241 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46966 * 270.23954 * 9 8 7 34 34 H 1.09007 * 109.46694 * 30.23715 * 9 8 7 35 35 H 1.08999 * 109.47463 * 150.22959 * 9 8 7 36 36 H 1.08998 * 109.46637 * 149.72586 * 11 10 8 37 37 H 1.08994 * 109.47093 * 29.72390 * 11 10 8 38 38 H 1.08996 * 109.47312 * 300.00636 * 13 12 11 39 39 H 1.09001 * 109.46735 * 60.00012 * 13 12 11 40 40 H 1.08999 * 109.47117 * 299.99842 * 14 13 12 41 41 H 1.09001 * 109.47353 * 60.00722 * 14 13 12 42 42 H 1.08999 * 109.47193 * 299.99257 * 15 14 13 43 43 H 1.09000 * 109.47384 * 60.00321 * 15 14 13 44 44 H 0.96995 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47144 * 84.77927 * 25 24 10 46 46 H 1.09003 * 109.47379 * 204.78110 * 25 24 10 47 47 H 1.09002 * 109.47206 * 324.78093 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 -0.0006 5 6 2.5138 -1.9303 1.2048 6 6 2.0534 -1.3335 2.5097 7 6 3.2033 -3.1241 1.1959 8 6 3.6225 -3.6767 -0.0021 9 6 4.3700 -4.9851 -0.0033 10 6 3.3629 -3.0312 -1.1984 11 6 3.8283 -3.6390 -2.4965 12 16 5.4922 -3.0306 -2.8866 13 6 5.8720 -3.8587 -4.4553 14 6 7.2672 -3.4436 -4.9263 15 6 7.5873 -4.1415 -6.2497 16 6 8.9619 -3.7331 -6.7134 17 1 9.5482 -3.0442 -6.1234 18 6 9.4704 -4.2380 -7.8913 19 7 8.7561 -5.0764 -8.6100 20 14 11.1738 -3.7312 -8.4664 21 1 12.1822 -4.6728 -7.9171 22 1 11.2247 -3.7616 -9.9502 23 1 11.4687 -2.3563 -7.9891 24 6 2.6743 -1.8364 -1.2062 25 6 2.3872 -1.1384 -2.5105 26 1 -0.3632 0.0898 1.0237 27 1 -0.3632 0.8417 -0.5896 28 1 -0.3633 -0.9314 -0.4340 29 1 1.0195 -1.6235 2.6970 30 1 2.6854 -1.6985 3.3193 31 1 2.1222 -0.2469 2.4566 32 1 3.4130 -3.6320 2.1258 33 1 5.4398 -4.7924 0.0776 34 1 4.0448 -5.5901 0.8432 35 1 4.1661 -5.5193 -0.9312 36 1 3.1423 -3.3582 -3.2957 37 1 3.8512 -4.7245 -2.4019 38 1 5.8437 -4.9389 -4.3121 39 1 5.1347 -3.5722 -5.2052 40 1 7.2959 -2.3634 -5.0694 41 1 8.0043 -3.7305 -4.1763 42 1 7.5586 -5.2218 -6.1070 43 1 6.8502 -3.8543 -6.9996 44 1 9.1140 -5.4319 -9.4384 45 1 1.4777 -1.5485 -2.9496 46 1 2.2546 -0.0716 -2.3303 47 1 3.2217 -1.2901 -3.1952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161100513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:43 Heat of formation + Delta-G solvation = -66.916450 kcal Electronic energy + Delta-G solvation = -23706.949524 eV Core-core repulsion = 20364.850819 eV Total energy + Delta-G solvation = -3342.098705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53222 -39.71238 -36.37281 -35.56433 -34.71483 -34.05557 -31.21406 -30.61075 -29.40448 -28.89373 -27.97749 -26.18392 -25.19458 -22.91499 -22.16255 -21.45010 -20.12644 -18.57895 -17.81459 -17.58666 -16.96408 -16.58396 -16.29627 -16.23440 -15.67435 -15.54605 -15.44505 -14.81231 -14.62403 -14.42036 -14.31243 -14.17182 -14.13274 -13.90391 -13.60662 -13.54118 -13.47440 -13.21733 -13.09427 -13.00117 -12.78447 -12.75028 -12.61125 -12.42736 -12.31968 -12.13775 -11.95512 -11.66953 -11.45490 -11.21832 -10.88975 -10.77830 -10.57568 -9.56091 -9.41114 -8.66158 -8.22609 -6.33456 -0.07930 0.18045 0.78813 0.95472 1.39242 1.40239 1.51693 1.67064 2.39790 2.59990 3.01186 3.10655 3.54629 3.67109 3.78546 3.93155 3.94820 4.03415 4.10177 4.15300 4.34006 4.40839 4.45269 4.49974 4.57556 4.58677 4.61190 4.62053 4.67297 4.73129 4.80341 4.81127 4.84257 4.88172 4.96423 5.02326 5.10099 5.11837 5.22962 5.28840 5.36654 5.43440 5.47368 5.59503 5.66949 5.80783 5.92187 6.21205 6.36635 6.81863 7.35606 8.89057 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.002254 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.684533 B =12420.732889 C =12994.585231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.415 3.585 3 O -0.494 6.494 4 C -0.184 4.184 5 C -0.048 4.048 6 C -0.121 4.121 7 C -0.131 4.131 8 C -0.050 4.050 9 C -0.120 4.120 10 C -0.094 4.094 11 C -0.040 4.040 12 S -0.285 6.285 13 C -0.069 4.069 14 C -0.080 4.080 15 C 0.032 3.968 16 C -0.546 4.546 17 H 0.057 0.943 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.038 4.038 25 C -0.129 4.129 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.153 0.847 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.054 0.946 42 H -0.002 1.002 43 H -0.003 1.003 44 H 0.265 0.735 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 3.130 23.249 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.293 3.707 3 O -0.370 6.370 4 C -0.185 4.185 5 C -0.049 4.049 6 C -0.177 4.177 7 C -0.149 4.149 8 C -0.052 4.052 9 C -0.176 4.176 10 C -0.096 4.096 11 C -0.187 4.187 12 S -0.055 6.055 13 C -0.217 4.217 14 C -0.119 4.119 15 C -0.007 4.007 16 C -0.584 4.584 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.040 4.040 25 C -0.185 4.185 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.076 0.924 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.389 4.277 23.630 31.502 hybrid contribution 0.370 -0.723 -1.562 1.761 sum -20.019 3.554 22.067 30.006 Atomic orbital electron populations 1.22329 0.90118 1.06129 1.06520 1.23046 0.93503 0.86601 0.67530 1.90580 1.73581 1.35462 1.37371 1.20341 1.05540 0.98578 0.94055 1.20158 0.96153 0.94288 0.94325 1.20958 1.03594 1.00076 0.93065 1.21082 0.99765 0.95783 0.98237 1.20165 0.95826 0.97071 0.92147 1.20951 0.99881 0.92950 1.03864 1.18896 1.01181 0.95866 0.93618 1.22345 0.94635 1.03598 0.98099 1.87225 1.22254 1.65466 1.30571 1.23363 1.00929 1.02154 0.95239 1.21155 0.93352 0.99842 0.97557 1.18973 0.95246 0.94684 0.91777 1.21658 1.02451 1.27295 1.06960 0.92522 1.25945 1.02000 0.94959 0.96727 1.70076 1.39277 1.32431 1.15294 0.85462 0.79285 0.79009 0.77410 1.19629 1.20496 1.19052 1.19786 0.95812 0.93767 0.94637 1.20992 1.03717 0.99541 0.94246 0.86082 0.88652 0.87955 0.88153 0.89373 0.92632 0.82925 0.90869 0.89216 0.91048 0.88423 0.87617 0.89910 0.90189 0.93052 0.92771 0.98353 0.98493 0.92651 0.88351 0.92367 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 10.26 71.24 0.73 -1.20 16 2 C 0.41 8.10 3.71 28.03 0.10 8.20 16 3 O -0.49 -13.77 17.72 -2.94 -0.05 -13.82 16 4 C -0.18 -3.79 5.52 -20.15 -0.11 -3.90 16 5 C -0.05 -0.83 5.92 -19.56 -0.12 -0.95 16 6 C -0.12 -1.36 9.53 71.24 0.68 -0.68 16 7 C -0.13 -2.17 9.31 22.23 0.21 -1.97 16 8 C -0.05 -0.97 5.89 -19.79 -0.12 -1.09 16 9 C -0.12 -1.94 9.59 71.23 0.68 -1.26 16 10 C -0.09 -2.09 5.13 -19.91 -0.10 -2.19 16 11 C -0.04 -0.91 4.93 71.24 0.35 -0.56 16 12 S -0.29 -8.74 21.33 -56.49 -1.21 -9.95 16 13 C -0.07 -2.36 5.94 71.98 0.43 -1.93 16 14 C -0.08 -3.43 5.16 30.59 0.16 -3.27 16 15 C 0.03 1.70 4.97 29.85 0.15 1.85 16 16 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 18 C 0.00 0.10 5.46 84.65 0.46 0.56 16 19 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 20 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.04 -0.85 5.92 -19.56 -0.12 -0.96 16 25 C -0.13 -2.68 8.72 71.24 0.62 -2.05 16 26 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.05 0.77 7.30 -2.39 -0.02 0.75 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.02 8.08 -2.38 -0.02 1.00 16 35 H 0.07 1.14 5.92 -2.39 -0.01 1.13 16 36 H 0.10 2.03 6.79 -2.39 -0.02 2.02 16 37 H 0.11 2.11 5.91 -2.39 -0.01 2.10 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.29 6.80 -2.39 -0.02 1.27 16 47 H 0.07 1.74 6.64 -2.39 -0.02 1.73 16 Total: -1.00 -71.90 395.53 6.24 -65.66 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.94 Total: 10.41 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 4.24 Total: -42.80 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.05 Total: -13.82 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.21 Total: -9.95 kcal Total: -71.90 6.24 -65.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161100513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.254 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds