Wall clock time and date at job start Tue Mar 31 2020 12:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38146 * 120.03660 * 2 1 4 4 C 1.38249 * 120.07108 * 179.97438 * 3 2 1 5 5 C 1.38303 * 120.14172 * 0.03947 * 4 3 2 6 6 C 1.38094 * 120.07219 * 359.70666 * 5 4 3 7 7 C 1.38844 * 120.03644 * 179.97438 * 2 1 3 8 8 N 1.39945 * 120.06971 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00107 * 155.46205 * 8 7 2 10 10 O 1.21592 * 120.00093 * 354.35943 * 9 8 7 11 11 N 1.34779 * 119.99977 * 174.08871 * 9 8 7 12 12 N 1.40094 * 120.00163 * 0.27353 * 11 9 8 13 13 C 1.34771 * 120.00381 * 180.02562 * 12 11 9 14 14 O 1.21592 * 120.00563 * 179.97438 * 13 12 11 15 15 N 1.34781 * 119.99643 * 0.02562 * 13 12 11 16 16 C 1.46503 * 119.99940 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47053 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46963 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99656 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00173 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46798 * 59.99602 * 23 21 19 25 25 H 1.48494 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47054 * 299.99987 * 23 21 19 27 27 H 1.09002 * 109.47786 * 270.02665 * 1 2 3 28 28 H 1.09006 * 109.47365 * 30.02506 * 1 2 3 29 29 H 1.09000 * 109.47423 * 150.02191 * 1 2 3 30 30 H 1.08002 * 119.96153 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.92997 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.96525 * 179.97438 * 5 4 3 33 33 H 1.07991 * 120.04132 * 180.27407 * 6 5 4 34 34 H 0.97001 * 119.99706 * 335.45301 * 8 7 2 35 35 H 0.97006 * 119.99633 * 180.27388 * 11 9 8 36 36 H 0.97001 * 119.99694 * 359.97438 * 12 11 9 37 37 H 0.97000 * 120.00368 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47473 * 300.00163 * 16 15 13 39 39 H 1.09010 * 109.47075 * 59.99713 * 16 15 13 40 40 H 1.09004 * 109.47188 * 300.00334 * 17 16 15 41 41 H 1.08996 * 109.46943 * 60.00150 * 17 16 15 42 42 H 1.08998 * 109.46958 * 299.99633 * 18 17 16 43 43 H 1.08996 * 109.47383 * 60.00101 * 18 17 16 44 44 H 0.97008 * 119.99946 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2761 0.0012 0.0002 6 6 3.5908 -1.1977 0.0055 7 6 2.2019 -1.2020 0.0005 8 7 1.5044 -2.4152 0.0005 9 6 2.0892 -3.5287 -0.4837 10 8 3.1814 -3.4605 -1.0137 11 7 1.4658 -4.7188 -0.3756 12 7 0.2074 -4.7975 0.2350 13 6 -0.4158 -5.9875 0.3436 14 8 -1.5078 -6.0559 0.8739 15 7 0.1720 -7.1020 -0.1348 16 6 -0.5051 -8.3958 -0.0163 17 6 0.3702 -9.4880 -0.6342 18 6 -0.3373 -10.8390 -0.5110 19 6 0.5252 -11.9149 -1.1191 20 1 1.4819 -11.6605 -1.5507 21 6 0.0927 -13.2241 -1.1245 22 7 -1.0721 -13.5340 -0.5985 23 14 1.1614 -14.5577 -1.8789 24 1 2.4623 -14.6124 -1.1648 25 1 0.4754 -15.8691 -1.7581 26 1 1.3963 -14.2516 -3.3128 27 1 -0.3635 0.0005 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6584 2.1312 -0.0004 31 1 4.1192 2.1331 0.0010 32 1 5.3561 0.0051 0.0002 33 1 4.1342 -2.1310 0.0098 34 1 0.6001 -2.4547 0.3492 35 1 1.8886 -5.5208 -0.7206 36 1 -0.2151 -3.9955 0.5803 37 1 1.0433 -7.0476 -0.5576 38 1 -0.6780 -8.6204 1.0361 39 1 -1.4598 -8.3556 -0.5409 40 1 0.5427 -9.2632 -1.6868 41 1 1.3250 -9.5283 -0.1101 42 1 -0.5101 -11.0640 0.5414 43 1 -1.2919 -10.7985 -1.0355 44 1 -1.3766 -14.4551 -0.6026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170886194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:58 Heat of formation + Delta-G solvation = 3.597815 kcal Electronic energy + Delta-G solvation = -25442.584355 eV Core-core repulsion = 21589.542915 eV Total energy + Delta-G solvation = -3853.041440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50734 -40.19399 -39.06837 -36.45517 -35.65736 -35.29499 -33.36680 -32.97940 -31.55060 -30.78421 -29.71941 -27.26579 -26.77391 -23.90391 -23.41359 -22.08310 -21.60812 -20.94726 -20.76801 -19.65071 -19.08583 -17.68139 -16.54730 -16.50569 -16.20251 -16.15532 -15.78106 -15.65684 -15.21274 -14.71288 -14.46912 -14.32090 -14.28899 -14.13528 -14.12291 -13.51597 -12.87225 -12.62332 -12.33039 -12.13371 -11.92552 -11.90502 -11.67730 -11.61421 -11.10363 -10.91997 -10.87192 -10.74716 -10.63089 -10.39405 -9.94796 -9.52764 -9.19015 -9.18051 -9.07783 -8.74770 -8.40382 -8.35529 -6.05155 -4.08564 0.92265 1.06123 1.42367 2.21928 2.44029 2.95733 3.20941 3.30296 3.35298 3.37343 3.47668 4.38529 4.41577 4.46291 4.65520 4.77517 4.87103 5.05629 5.11928 5.13718 5.29772 5.30720 5.46355 5.48052 5.59839 5.67606 5.71696 5.81581 5.98501 6.04997 6.13295 6.23170 6.25014 6.28860 6.50330 6.57814 6.69557 6.71959 6.91293 7.07567 7.58328 7.64413 7.70072 7.92692 7.94922 8.26237 8.33919 8.97634 9.55899 11.05919 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.001876 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.195553 B =14924.588094 C =15837.763989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.137 4.137 5 C -0.103 4.103 6 C -0.127 4.127 7 C 0.165 3.835 8 N -0.678 5.678 9 C 0.715 3.285 10 O -0.553 6.553 11 N -0.529 5.529 12 N -0.547 5.547 13 C 0.712 3.288 14 O -0.569 6.569 15 N -0.734 5.734 16 C 0.131 3.869 17 C -0.122 4.122 18 C 0.025 3.975 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.438 0.562 36 H 0.426 0.574 37 H 0.391 0.609 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 30.701 2.319 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.156 4.156 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.070 3.930 8 N -0.327 5.327 9 C 0.415 3.585 10 O -0.426 6.426 11 N -0.289 5.289 12 N -0.308 5.308 13 C 0.412 3.588 14 O -0.442 6.442 15 N -0.389 5.389 16 C 0.009 3.991 17 C -0.160 4.160 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.722 3.278 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.242 0.758 35 H 0.284 0.716 36 H 0.271 0.729 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.840 30.377 2.366 31.023 hybrid contribution 0.484 -0.820 -0.468 1.061 sum 6.324 29.557 1.898 30.285 Atomic orbital electron populations 1.20757 0.90950 1.03195 1.02512 1.19583 0.96044 0.91649 1.04882 1.20818 0.94197 0.96725 1.00077 1.21132 0.94218 0.98208 1.02014 1.21075 1.00080 0.91854 0.99174 1.21457 0.92313 1.00096 1.00850 1.17355 0.91365 0.83269 1.01013 1.42573 1.18620 1.06788 1.64683 1.15581 0.83781 0.79591 0.79516 1.91031 1.19327 1.83162 1.49085 1.44531 1.11527 1.09821 1.62973 1.44682 1.10891 1.10466 1.64774 1.15756 0.83681 0.79547 0.79858 1.91052 1.19595 1.83308 1.50217 1.45465 1.23037 1.07341 1.63093 1.21671 0.96385 0.79183 1.01884 1.21925 0.98642 0.96001 0.99472 1.19023 0.95812 0.88783 0.97691 1.21151 1.04205 0.92284 1.38638 0.92666 1.25024 0.95134 0.98807 0.95447 1.69952 1.19323 1.18934 1.44974 0.86634 0.80502 0.80959 0.79754 1.20241 1.21260 1.20237 0.90886 0.90772 0.91929 0.85672 0.85987 0.85673 0.83416 0.75834 0.71580 0.72924 0.77431 0.91367 0.91377 0.92585 0.92579 0.96168 0.96170 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.45 36.00 0.34 -0.25 16 2 C -0.12 -0.89 5.90 -104.44 -0.62 -1.50 16 3 C -0.10 -0.68 9.70 -39.61 -0.38 -1.07 16 4 C -0.14 -0.96 10.04 -39.55 -0.40 -1.36 16 5 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 6 C -0.13 -1.25 8.72 -39.39 -0.34 -1.60 16 7 C 0.16 1.49 6.41 -83.69 -0.54 0.95 16 8 N -0.68 -5.39 4.94 -14.22 -0.07 -5.46 16 9 C 0.72 7.08 8.48 -86.92 -0.74 6.34 16 10 O -0.55 -7.12 14.34 5.28 0.08 -7.05 16 11 N -0.53 -4.51 6.26 27.63 0.17 -4.34 16 12 N -0.55 -4.89 6.26 27.63 0.17 -4.72 16 13 C 0.71 9.22 8.68 -86.92 -0.75 8.47 16 14 O -0.57 -9.57 17.18 5.28 0.09 -9.48 16 15 N -0.73 -9.30 5.52 -65.22 -0.36 -9.66 16 16 C 0.13 2.12 5.67 -4.04 -0.02 2.09 16 17 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 20 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.06 0.30 6.98 -51.93 -0.36 -0.06 16 30 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.15 1.65 5.79 -52.49 -0.30 1.35 16 34 H 0.40 2.25 5.33 -40.82 -0.22 2.03 16 35 H 0.44 3.43 6.80 -182.60 -1.24 2.18 16 36 H 0.43 2.92 6.82 -182.60 -1.24 1.68 16 37 H 0.39 3.97 6.39 -40.82 -0.26 3.70 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -34.03 369.95 -10.99 -45.02 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.82 Total: 3.69 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.54 Total: -4.19 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.65 Total: -49.78 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.17 Total: -16.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.03 -10.99 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.615 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds