Wall clock time and date at job start Tue Mar 31 2020 12:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38146 * 120.03660 * 2 1 4 4 C 1.38249 * 120.07108 * 179.97438 * 3 2 1 5 5 C 1.38303 * 120.14172 * 0.03947 * 4 3 2 6 6 C 1.38094 * 120.07219 * 359.70666 * 5 4 3 7 7 C 1.38844 * 120.03644 * 179.97438 * 2 1 3 8 8 N 1.39945 * 120.06971 * 0.02562 * 7 2 1 9 9 C 1.34770 * 120.00107 * 155.46205 * 8 7 2 10 10 O 1.21592 * 120.00093 * 354.35943 * 9 8 7 11 11 N 1.34779 * 119.99977 * 174.08871 * 9 8 7 12 12 N 1.40094 * 120.00163 * 0.27353 * 11 9 8 13 13 C 1.34771 * 120.00381 * 180.02562 * 12 11 9 14 14 O 1.21592 * 120.00563 * 179.97438 * 13 12 11 15 15 N 1.34781 * 119.99643 * 0.02562 * 13 12 11 16 16 C 1.46503 * 119.99940 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47053 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46963 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99656 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00173 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46798 * 59.99602 * 23 21 19 25 25 H 1.48494 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47054 * 299.99987 * 23 21 19 27 27 H 1.09002 * 109.47786 * 270.02665 * 1 2 3 28 28 H 1.09006 * 109.47365 * 30.02506 * 1 2 3 29 29 H 1.09000 * 109.47423 * 150.02191 * 1 2 3 30 30 H 1.08002 * 119.96153 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.92997 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.96525 * 179.97438 * 5 4 3 33 33 H 1.07991 * 120.04132 * 180.27407 * 6 5 4 34 34 H 0.97001 * 119.99706 * 335.45301 * 8 7 2 35 35 H 0.97006 * 119.99633 * 180.27388 * 11 9 8 36 36 H 0.97001 * 119.99694 * 359.97438 * 12 11 9 37 37 H 0.97000 * 120.00368 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47473 * 300.00163 * 16 15 13 39 39 H 1.09010 * 109.47075 * 59.99713 * 16 15 13 40 40 H 1.09004 * 109.47188 * 300.00334 * 17 16 15 41 41 H 1.08996 * 109.46943 * 60.00150 * 17 16 15 42 42 H 1.08998 * 109.46958 * 299.99633 * 18 17 16 43 43 H 1.08996 * 109.47383 * 60.00101 * 18 17 16 44 44 H 0.97008 * 119.99946 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2761 0.0012 0.0002 6 6 3.5908 -1.1977 0.0055 7 6 2.2019 -1.2020 0.0005 8 7 1.5044 -2.4152 0.0005 9 6 2.0892 -3.5287 -0.4837 10 8 3.1814 -3.4605 -1.0137 11 7 1.4658 -4.7188 -0.3756 12 7 0.2074 -4.7975 0.2350 13 6 -0.4158 -5.9875 0.3436 14 8 -1.5078 -6.0559 0.8739 15 7 0.1720 -7.1020 -0.1348 16 6 -0.5051 -8.3958 -0.0163 17 6 0.3702 -9.4880 -0.6342 18 6 -0.3373 -10.8390 -0.5110 19 6 0.5252 -11.9149 -1.1191 20 1 1.4819 -11.6605 -1.5507 21 6 0.0927 -13.2241 -1.1245 22 7 -1.0721 -13.5340 -0.5985 23 14 1.1614 -14.5577 -1.8789 24 1 2.4623 -14.6124 -1.1648 25 1 0.4754 -15.8691 -1.7581 26 1 1.3963 -14.2516 -3.3128 27 1 -0.3635 0.0005 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6584 2.1312 -0.0004 31 1 4.1192 2.1331 0.0010 32 1 5.3561 0.0051 0.0002 33 1 4.1342 -2.1310 0.0098 34 1 0.6001 -2.4547 0.3492 35 1 1.8886 -5.5208 -0.7206 36 1 -0.2151 -3.9955 0.5803 37 1 1.0433 -7.0476 -0.5576 38 1 -0.6780 -8.6204 1.0361 39 1 -1.4598 -8.3556 -0.5409 40 1 0.5427 -9.2632 -1.6868 41 1 1.3250 -9.5283 -0.1101 42 1 -0.5101 -11.0640 0.5414 43 1 -1.2919 -10.7985 -1.0355 44 1 -1.3766 -14.4551 -0.6026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170886194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:58 Heat of formation + Delta-G solvation = -19.690269 kcal Electronic energy + Delta-G solvation = -25443.594202 eV Core-core repulsion = 21589.542915 eV Total energy + Delta-G solvation = -3854.051287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28416 -41.15749 -39.77479 -37.41188 -37.03820 -35.99971 -35.17730 -33.50816 -33.05003 -31.87962 -30.35412 -28.52902 -27.73780 -25.18384 -24.51549 -22.74914 -22.57174 -22.31610 -21.74783 -20.39388 -20.15486 -18.57281 -18.27544 -17.34531 -17.23174 -17.02349 -16.70328 -16.54455 -16.42523 -16.08641 -15.68970 -15.45252 -15.27635 -14.81607 -14.70200 -14.25828 -14.07630 -13.74967 -13.64479 -13.29466 -13.12240 -12.79057 -12.66203 -12.56835 -12.49308 -12.40799 -12.17524 -11.99114 -11.70891 -11.66764 -11.42751 -11.25371 -11.17685 -10.53188 -10.34282 -9.66634 -9.60176 -8.98955 -8.18310 -6.29156 0.31742 0.46158 0.60683 1.42029 1.44127 1.44868 1.52775 1.62306 1.94745 2.25567 2.43433 2.88686 3.15636 3.82982 3.94519 3.98106 4.12245 4.24330 4.24765 4.41331 4.47394 4.53961 4.56492 4.78117 4.80233 4.81370 4.94294 4.96889 5.01949 5.12132 5.20196 5.29118 5.32952 5.37381 5.51036 5.54693 5.61255 5.66336 5.73440 5.81453 5.86287 6.11497 6.22782 6.26351 6.83745 6.88346 7.10552 7.26866 7.40203 8.93184 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.001876 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.195553 B =14924.588094 C =15837.763989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.151 4.151 7 C 0.144 3.856 8 N -0.667 5.667 9 C 0.716 3.284 10 O -0.583 6.583 11 N -0.520 5.520 12 N -0.526 5.526 13 C 0.716 3.284 14 O -0.607 6.607 15 N -0.725 5.725 16 C 0.146 3.854 17 C -0.104 4.104 18 C 0.023 3.977 19 C -0.542 4.542 20 H 0.065 0.935 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.267 1.267 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.416 0.584 35 H 0.442 0.558 36 H 0.439 0.561 37 H 0.406 0.594 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.005 1.005 43 H -0.005 1.005 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 32.541 1.811 33.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.156 4.156 5 C -0.133 4.133 6 C -0.171 4.171 7 C 0.049 3.951 8 N -0.316 5.316 9 C 0.416 3.584 10 O -0.458 6.458 11 N -0.280 5.280 12 N -0.287 5.287 13 C 0.415 3.585 14 O -0.483 6.483 15 N -0.382 5.382 16 C 0.022 3.978 17 C -0.142 4.142 18 C -0.014 4.014 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.192 1.192 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.255 0.745 35 H 0.289 0.711 36 H 0.286 0.714 37 H 0.243 0.757 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.753 32.276 1.855 33.027 hybrid contribution 0.221 -1.276 -0.293 1.328 sum 6.974 30.999 1.562 31.812 Atomic orbital electron populations 1.20833 0.89195 1.03874 1.03570 1.19903 0.97403 0.91192 1.03846 1.21209 0.94369 0.97557 0.99043 1.21456 0.94662 0.98621 1.00856 1.21285 1.00868 0.91872 0.99313 1.21442 0.93037 1.00003 1.02632 1.17547 0.91335 0.84040 1.02163 1.42432 1.18932 1.06141 1.64119 1.15642 0.83429 0.80027 0.79350 1.91022 1.20720 1.83575 1.50496 1.44437 1.11006 1.09818 1.62712 1.44299 1.10762 1.09773 1.63822 1.15687 0.83225 0.80139 0.79460 1.91038 1.21360 1.84091 1.51817 1.45096 1.23507 1.06269 1.63309 1.21225 0.95671 0.80133 1.00757 1.21622 0.98587 0.93351 1.00681 1.18939 0.95139 0.91916 0.95452 1.21660 1.04808 0.93199 1.38312 0.91651 1.25978 0.96446 1.01568 0.95992 1.70095 1.21239 1.19445 1.46508 0.85515 0.78762 0.77626 0.79221 1.19181 1.21220 1.19167 0.89552 0.89582 0.91807 0.83151 0.83668 0.84610 0.85456 0.74509 0.71067 0.71401 0.75680 0.92486 0.92461 0.91330 0.91340 0.98675 0.98657 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.45 71.23 0.67 -0.23 16 2 C -0.12 -1.59 5.90 -19.74 -0.12 -1.70 16 3 C -0.10 -1.18 9.70 22.25 0.22 -0.96 16 4 C -0.14 -1.68 10.04 22.29 0.22 -1.45 16 5 C -0.11 -1.81 10.04 22.25 0.22 -1.59 16 6 C -0.15 -3.02 8.72 22.39 0.20 -2.82 16 7 C 0.14 2.50 6.41 38.15 0.24 2.75 16 8 N -0.67 -9.98 4.94 -317.18 -1.57 -11.54 16 9 C 0.72 13.68 8.48 179.06 1.52 15.20 16 10 O -0.58 -15.12 14.34 -4.01 -0.06 -15.18 16 11 N -0.52 -8.17 6.26 -184.74 -1.16 -9.32 16 12 N -0.53 -8.57 6.26 -184.75 -1.16 -9.73 16 13 C 0.72 17.68 8.68 179.05 1.55 19.24 16 14 O -0.61 -20.08 17.18 -4.00 -0.07 -20.15 16 15 N -0.73 -17.45 5.52 -478.53 -2.64 -20.09 16 16 C 0.15 4.66 5.67 86.38 0.49 5.15 16 17 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 18 C 0.02 1.16 4.97 29.85 0.15 1.31 16 19 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 20 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 22 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 23 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.47 8.09 -2.38 -0.02 0.45 16 29 H 0.06 0.47 6.98 -2.39 -0.02 0.46 16 30 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 31 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 32 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.13 3.02 5.79 -2.92 -0.02 3.00 16 34 H 0.42 3.97 5.33 -92.71 -0.49 3.47 16 35 H 0.44 6.25 6.80 -213.32 -1.45 4.79 16 36 H 0.44 5.22 6.82 -213.32 -1.45 3.76 16 37 H 0.41 7.43 6.39 -92.71 -0.59 6.84 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -74.58 369.95 -1.03 -75.62 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -2.92 Total: 18.48 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.23 Total: 2.31 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -6.24 Total: -106.46 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.13 Total: -35.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -74.58 -1.03 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.925 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds