Wall clock time and date at job start Tue Mar 31 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81407 * 102.99974 * 2 1 4 4 C 1.52992 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47292 * 174.73720 * 4 3 2 6 6 H 1.08998 * 109.47304 * 305.55544 * 5 4 3 7 7 N 1.46898 * 109.47197 * 185.55635 * 5 4 3 8 8 C 1.46905 * 111.00190 * 86.02499 * 7 5 4 9 9 C 1.52993 * 109.47437 * 175.50527 * 8 7 5 10 10 C 1.50696 * 109.47413 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99986 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00303 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00126 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99977 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47299 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47357 * 119.99954 * 14 12 10 17 17 H 1.48497 * 109.47380 * 240.00044 * 14 12 10 18 18 C 1.50697 * 109.47196 * 65.55853 * 5 4 3 19 19 N 1.30806 * 126.24972 * 74.68662 * 18 5 4 20 20 N 1.28677 * 110.29433 * 179.82265 * 19 18 5 21 21 C 1.32305 * 109.48009 * 0.45211 * 20 19 18 22 22 C 1.40823 * 133.46742 * 179.75270 * 21 20 19 23 23 C 1.36016 * 119.22555 * 179.97438 * 22 21 20 24 24 C 1.40546 * 119.74888 * 0.02562 * 23 22 21 25 25 C 1.34947 * 120.36733 * 359.97438 * 24 23 22 26 26 N 1.36063 * 126.24899 * 255.00310 * 18 5 4 27 27 H 1.08998 * 109.47215 * 59.99858 * 1 2 3 28 28 H 1.08995 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47281 * 299.99981 * 1 2 3 30 30 H 1.09004 * 109.47130 * 300.00086 * 3 2 1 31 31 H 1.08998 * 109.47144 * 59.99616 * 3 2 1 32 32 H 1.09004 * 109.47252 * 294.73774 * 4 3 2 33 33 H 1.09008 * 109.47246 * 54.73497 * 4 3 2 34 34 H 1.00901 * 111.00331 * 209.97273 * 7 5 4 35 35 H 1.09003 * 109.46591 * 295.50403 * 8 7 5 36 36 H 1.08996 * 109.46864 * 55.50352 * 8 7 5 37 37 H 1.09003 * 109.47129 * 299.99547 * 9 8 7 38 38 H 1.09004 * 109.47332 * 59.99435 * 9 8 7 39 39 H 0.96995 * 120.00072 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.38640 * 0.02562 * 22 21 20 41 41 H 1.07998 * 120.12523 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.81402 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.74698 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 6 4.0870 3.4248 -0.1330 6 1 3.5950 3.8348 -1.0149 7 7 5.5416 3.5796 -0.2673 8 6 5.9580 3.4464 -1.6698 9 6 7.4581 3.7239 -1.7851 10 6 7.8851 3.5879 -3.2239 11 1 7.1591 3.3290 -3.9804 12 6 9.2025 3.7940 -3.5745 13 7 10.0865 4.1097 -2.6535 14 14 9.7318 3.6247 -5.3579 15 1 8.5565 3.2643 -6.1911 16 1 10.2978 4.9136 -5.8309 17 1 10.7620 2.5610 -5.4698 18 6 3.6147 4.1614 1.0939 19 7 4.1730 4.1322 2.2765 20 7 3.5189 4.8765 3.0974 21 6 2.4869 5.4205 2.4734 22 6 1.4596 6.2939 2.8797 23 6 0.5205 6.6809 1.9751 24 6 0.5873 6.2061 0.6540 25 6 1.5776 5.3695 0.2789 26 7 2.5262 4.9737 1.1753 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2372 -0.8900 31 1 1.8031 2.2372 0.8899 32 1 4.1522 1.5536 0.9325 33 1 4.1698 1.3915 -0.8400 34 1 5.8489 4.4597 0.1190 35 1 5.7479 2.4346 -2.0166 36 1 5.4081 4.1616 -2.2815 37 1 7.6682 4.7357 -1.4383 38 1 8.0080 3.0087 -1.1733 39 1 11.0133 4.2544 -2.9001 40 1 1.4184 6.6528 3.8975 41 1 -0.2740 7.3499 2.2711 42 1 -0.1576 6.5130 -0.0653 43 1 1.6195 5.0111 -0.7390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184596805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:08 Heat of formation + Delta-G solvation = 100.510864 kcal Electronic energy + Delta-G solvation = -24159.209452 eV Core-core repulsion = 20753.123348 eV Total energy + Delta-G solvation = -3406.086104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.72769 -38.49006 -37.34806 -34.36648 -33.62444 -32.37469 -31.42832 -30.11416 -29.22443 -28.76334 -25.88824 -24.51231 -23.74795 -23.48937 -23.07927 -20.72532 -20.27468 -18.30106 -17.41281 -16.90380 -16.49127 -16.29045 -16.22926 -15.56885 -15.36991 -15.00243 -14.54239 -14.41318 -14.17633 -13.71876 -13.52122 -13.47086 -12.98612 -12.79704 -12.64783 -12.33660 -12.21814 -11.97536 -11.73028 -11.67259 -11.39643 -11.19252 -11.05824 -10.92150 -10.60085 -10.54494 -10.19766 -10.06002 -9.79851 -9.45474 -9.17236 -8.37829 -8.32389 -8.03468 -7.87915 -6.00727 -4.04030 0.29197 0.82776 1.41707 2.02928 2.36578 2.56006 3.06052 3.30585 3.38122 3.41315 3.76331 4.05191 4.14135 4.20819 4.41614 4.46307 4.54618 4.68316 4.69249 4.82116 4.84144 4.95902 5.04881 5.11666 5.18287 5.33462 5.35327 5.39227 5.44244 5.57578 5.71478 5.79852 5.91389 6.01332 6.16248 6.22909 6.28892 6.60236 6.88360 7.29632 7.65026 7.71640 7.85258 8.04201 8.39196 8.46216 9.03121 9.59962 11.10619 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003360 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.020105 B = 8330.553272 C = 9957.945967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.248 6.248 3 C -0.084 4.084 4 C -0.090 4.090 5 C 0.190 3.810 6 H 0.056 0.944 7 N -0.669 5.669 8 C 0.065 3.935 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.283 1.283 18 C 0.145 3.855 19 N -0.218 5.218 20 N -0.287 5.287 21 C 0.184 3.816 22 C -0.075 4.075 23 C -0.093 4.093 24 C -0.140 4.140 25 C 0.066 3.934 26 N -0.389 5.389 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.347 0.653 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.635 2.239 6.788 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.023 6.023 3 C -0.233 4.233 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.074 0.926 7 N -0.302 5.302 8 C -0.063 4.063 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.117 4.117 19 N -0.057 5.057 20 N -0.133 5.133 21 C -0.065 4.065 22 C -0.096 4.096 23 C -0.118 4.118 24 C -0.161 4.161 25 C -0.057 4.057 26 N -0.070 5.070 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.172 0.828 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.494 0.278 8.103 25.801 hybrid contribution -1.755 2.262 -2.350 3.704 sum -26.249 2.540 5.754 26.992 Atomic orbital electron populations 1.23379 0.94917 1.06470 1.04607 1.87098 1.06423 1.10744 1.97989 1.23404 1.01224 0.94747 1.03903 1.21366 0.90998 0.94739 1.05883 1.19819 0.91500 0.93178 0.87966 0.92631 1.60604 1.06823 1.41387 1.21380 1.22339 1.00130 0.99844 0.83944 1.19088 0.87830 0.97345 0.97063 1.21158 0.93955 1.47734 0.93270 0.92656 1.25004 0.96757 0.95235 0.97337 1.69980 1.02720 1.47558 1.32711 0.86535 0.78659 0.77678 0.85102 1.19767 1.21071 1.20913 1.25109 0.88078 0.99013 0.99509 1.74344 1.20805 1.13305 0.97268 1.75071 1.03864 1.10737 1.23664 1.22404 1.00012 1.01964 0.82081 1.20302 0.91549 0.96064 1.01717 1.21164 0.98778 0.99302 0.92519 1.20923 0.98860 0.98549 0.97804 1.21684 0.89507 0.99113 0.95407 1.43795 1.19983 1.32153 1.11032 0.90620 0.88033 0.90816 0.90416 0.91119 0.89077 0.88861 0.83348 0.91652 0.96468 0.96779 0.95220 0.92972 0.82629 0.83583 0.82787 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.76 101.05 1.09 0.13 16 2 S -0.25 -2.85 22.38 -107.50 -2.41 -5.26 16 3 C -0.08 -0.92 5.67 37.15 0.21 -0.71 16 4 C -0.09 -1.21 4.93 -26.74 -0.13 -1.35 16 5 C 0.19 2.70 2.56 -68.87 -0.18 2.52 16 6 H 0.06 0.70 7.28 -51.93 -0.38 0.32 16 7 N -0.67 -11.97 6.33 -107.96 -0.68 -12.65 16 8 C 0.07 1.31 5.47 -3.82 -0.02 1.29 16 9 C 0.02 0.62 5.19 -27.89 -0.14 0.48 16 10 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.15 2.12 5.72 -154.22 -0.88 1.24 16 19 N -0.22 -3.81 12.18 32.94 0.40 -3.41 16 20 N -0.29 -4.75 12.31 31.14 0.38 -4.37 16 21 C 0.18 2.39 7.92 -156.06 -1.24 1.15 16 22 C -0.07 -0.65 10.11 -39.40 -0.40 -1.04 16 23 C -0.09 -0.54 10.07 -39.51 -0.40 -0.94 16 24 C -0.14 -0.79 9.98 -39.88 -0.40 -1.19 16 25 C 0.07 0.53 10.80 -16.69 -0.18 0.35 16 26 N -0.39 -4.67 2.95 -59.73 -0.18 -4.85 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.81 7.57 -51.93 -0.39 0.41 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.09 1.33 7.49 -51.92 -0.39 0.94 16 34 H 0.35 6.50 8.28 -39.29 -0.33 6.18 16 35 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 36 H 0.02 0.33 7.94 -51.93 -0.41 -0.08 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 42 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 43 H 0.17 0.96 7.76 -52.48 -0.41 0.55 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.17 375.09 -10.66 -44.83 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.46 Total: 1.14 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.08 Total: -11.43 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.66 Total: -51.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.41 Total: -5.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.17 -10.66 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184596805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.337 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds