Wall clock time and date at job start Tue Mar 31 2020 12:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81407 * 102.99974 * 2 1 4 4 C 1.52992 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47292 * 174.73720 * 4 3 2 6 6 H 1.08998 * 109.47304 * 305.55544 * 5 4 3 7 7 N 1.46898 * 109.47197 * 185.55635 * 5 4 3 8 8 C 1.46905 * 111.00190 * 86.02499 * 7 5 4 9 9 C 1.52993 * 109.47437 * 175.50527 * 8 7 5 10 10 C 1.50696 * 109.47413 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99986 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00303 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00126 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99977 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47299 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47357 * 119.99954 * 14 12 10 17 17 H 1.48497 * 109.47380 * 240.00044 * 14 12 10 18 18 C 1.50697 * 109.47196 * 65.55853 * 5 4 3 19 19 N 1.30806 * 126.24972 * 74.68662 * 18 5 4 20 20 N 1.28677 * 110.29433 * 179.82265 * 19 18 5 21 21 C 1.32305 * 109.48009 * 0.45211 * 20 19 18 22 22 C 1.40823 * 133.46742 * 179.75270 * 21 20 19 23 23 C 1.36016 * 119.22555 * 179.97438 * 22 21 20 24 24 C 1.40546 * 119.74888 * 0.02562 * 23 22 21 25 25 C 1.34947 * 120.36733 * 359.97438 * 24 23 22 26 26 N 1.36063 * 126.24899 * 255.00310 * 18 5 4 27 27 H 1.08998 * 109.47215 * 59.99858 * 1 2 3 28 28 H 1.08995 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47281 * 299.99981 * 1 2 3 30 30 H 1.09004 * 109.47130 * 300.00086 * 3 2 1 31 31 H 1.08998 * 109.47144 * 59.99616 * 3 2 1 32 32 H 1.09004 * 109.47252 * 294.73774 * 4 3 2 33 33 H 1.09008 * 109.47246 * 54.73497 * 4 3 2 34 34 H 1.00901 * 111.00331 * 209.97273 * 7 5 4 35 35 H 1.09003 * 109.46591 * 295.50403 * 8 7 5 36 36 H 1.08996 * 109.46864 * 55.50352 * 8 7 5 37 37 H 1.09003 * 109.47129 * 299.99547 * 9 8 7 38 38 H 1.09004 * 109.47332 * 59.99435 * 9 8 7 39 39 H 0.96995 * 120.00072 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.38640 * 0.02562 * 22 21 20 41 41 H 1.07998 * 120.12523 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.81402 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.74698 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 6 4.0870 3.4248 -0.1330 6 1 3.5950 3.8348 -1.0149 7 7 5.5416 3.5796 -0.2673 8 6 5.9580 3.4464 -1.6698 9 6 7.4581 3.7239 -1.7851 10 6 7.8851 3.5879 -3.2239 11 1 7.1591 3.3290 -3.9804 12 6 9.2025 3.7940 -3.5745 13 7 10.0865 4.1097 -2.6535 14 14 9.7318 3.6247 -5.3579 15 1 8.5565 3.2643 -6.1911 16 1 10.2978 4.9136 -5.8309 17 1 10.7620 2.5610 -5.4698 18 6 3.6147 4.1614 1.0939 19 7 4.1730 4.1322 2.2765 20 7 3.5189 4.8765 3.0974 21 6 2.4869 5.4205 2.4734 22 6 1.4596 6.2939 2.8797 23 6 0.5205 6.6809 1.9751 24 6 0.5873 6.2061 0.6540 25 6 1.5776 5.3695 0.2789 26 7 2.5262 4.9737 1.1753 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2372 -0.8900 31 1 1.8031 2.2372 0.8899 32 1 4.1522 1.5536 0.9325 33 1 4.1698 1.3915 -0.8400 34 1 5.8489 4.4597 0.1190 35 1 5.7479 2.4346 -2.0166 36 1 5.4081 4.1616 -2.2815 37 1 7.6682 4.7357 -1.4383 38 1 8.0080 3.0087 -1.1733 39 1 11.0133 4.2544 -2.9001 40 1 1.4184 6.6528 3.8975 41 1 -0.2740 7.3499 2.2711 42 1 -0.1576 6.5130 -0.0653 43 1 1.6195 5.0111 -0.7390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184596805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:07 Heat of formation + Delta-G solvation = 78.963573 kcal Electronic energy + Delta-G solvation = -24160.143813 eV Core-core repulsion = 20753.123348 eV Total energy + Delta-G solvation = -3407.020464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.63883 -39.26518 -38.60095 -35.81794 -34.80388 -33.99146 -32.23470 -31.39508 -30.10997 -29.83905 -27.30725 -25.44517 -25.19048 -24.35399 -24.08949 -22.50076 -21.31187 -19.16347 -18.56453 -18.13219 -17.79819 -17.37777 -17.10817 -16.53245 -16.40914 -16.28753 -15.79172 -15.55718 -15.30930 -14.89504 -14.51385 -14.30131 -14.14288 -13.88770 -13.62749 -13.45964 -13.34777 -13.10230 -12.94248 -12.88379 -12.63282 -12.53631 -12.39845 -12.30167 -12.10913 -11.89845 -11.56286 -11.43199 -11.27676 -11.01323 -10.61022 -10.57634 -9.47103 -9.12632 -8.76800 -8.19628 -6.31708 -0.31711 0.06289 0.60857 1.19921 1.41144 1.42446 1.55277 1.59064 1.61857 2.36257 2.40895 2.87701 3.03226 3.14353 3.28368 3.48494 3.65521 3.82231 3.88430 3.94504 3.99596 4.08175 4.16355 4.28412 4.31485 4.37117 4.50911 4.53300 4.63651 4.71513 4.80858 4.83238 4.95861 5.00615 5.00953 5.13663 5.16177 5.43003 5.44485 5.62852 5.75387 5.86012 6.05622 6.15147 6.31630 6.86110 7.38010 7.46617 8.92994 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003360 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.020105 B = 8330.553272 C = 9957.945967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.311 6.311 3 C -0.062 4.062 4 C -0.083 4.083 5 C 0.198 3.802 6 H 0.083 0.917 7 N -0.683 5.683 8 C 0.087 3.913 9 C 0.029 3.971 10 C -0.539 4.539 11 H 0.067 0.933 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.256 1.256 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.134 3.866 19 N -0.267 5.267 20 N -0.347 5.347 21 C 0.183 3.817 22 C -0.108 4.108 23 C -0.059 4.059 24 C -0.119 4.119 25 C 0.037 3.963 26 N -0.386 5.386 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.339 0.661 35 H 0.070 0.930 36 H 0.032 0.968 37 H -0.013 1.013 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.170 0.830 41 H 0.192 0.808 42 H 0.201 0.799 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.048 3.573 4.336 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.086 6.086 3 C -0.211 4.211 4 C -0.123 4.123 5 C 0.085 3.915 6 H 0.101 0.899 7 N -0.315 5.315 8 C -0.042 4.042 9 C -0.008 4.008 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.180 1.180 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.130 4.130 19 N -0.106 5.106 20 N -0.193 5.193 21 C -0.066 4.066 22 C -0.129 4.129 23 C -0.084 4.084 24 C -0.140 4.140 25 C -0.084 4.084 26 N -0.066 5.066 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.005 0.995 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.187 0.813 41 H 0.209 0.791 42 H 0.218 0.782 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -28.941 1.608 5.655 29.532 hybrid contribution -0.607 1.959 -1.544 2.567 sum -29.548 3.567 4.111 30.045 Atomic orbital electron populations 1.23427 0.90656 1.07656 1.05851 1.87337 1.11178 1.11908 1.98153 1.23187 0.98905 0.94125 1.04837 1.21225 0.93122 0.94063 1.03859 1.19768 0.89056 0.93695 0.89030 0.89937 1.60461 1.10088 1.41126 1.19842 1.21934 0.96278 1.00357 0.85585 1.18938 0.91546 0.94621 0.95722 1.21616 0.94553 1.47298 0.94312 0.91445 1.26028 0.96894 0.94712 1.02389 1.70136 1.03182 1.48746 1.35378 0.85342 0.78549 0.77712 0.79084 1.18010 1.20476 1.20656 1.24802 0.89370 1.00192 0.98671 1.74171 1.22695 1.14886 0.98809 1.74906 1.06287 1.13169 1.24926 1.22994 0.99733 1.01570 0.82336 1.20692 0.91795 0.96854 1.03556 1.21794 0.97663 0.97141 0.91757 1.21597 0.98052 0.95880 0.98454 1.22462 0.89481 1.00393 0.96098 1.43819 1.19912 1.31432 1.11415 0.88804 0.86891 0.90043 0.87736 0.91598 0.92048 0.89748 0.84256 0.91148 0.94950 0.99469 0.98937 0.92835 0.81254 0.79126 0.78193 0.79209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.76 113.37 1.22 -0.16 16 2 S -0.31 -6.98 22.38 -56.49 -1.26 -8.24 16 3 C -0.06 -1.29 5.67 71.98 0.41 -0.89 16 4 C -0.08 -2.30 4.93 30.59 0.15 -2.15 16 5 C 0.20 5.69 2.56 44.17 0.11 5.81 16 6 H 0.08 1.92 7.28 -2.39 -0.02 1.90 16 7 N -0.68 -25.65 6.33 -495.47 -3.14 -28.79 16 8 C 0.09 3.54 5.47 86.30 0.47 4.02 16 9 C 0.03 1.58 5.19 29.84 0.15 1.73 16 10 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 11 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 12 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 13 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 14 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.13 4.04 5.72 137.71 0.79 4.82 16 19 N -0.27 -10.08 12.18 -49.69 -0.61 -10.68 16 20 N -0.35 -12.30 12.31 -55.40 -0.68 -12.98 16 21 C 0.18 4.76 7.92 134.07 1.06 5.82 16 22 C -0.11 -1.63 10.11 22.39 0.23 -1.41 16 23 C -0.06 -0.39 10.07 22.32 0.22 -0.16 16 24 C -0.12 -0.68 9.98 22.08 0.22 -0.46 16 25 C 0.04 0.47 10.80 83.23 0.90 1.37 16 26 N -0.39 -8.93 2.95 -342.89 -1.01 -9.95 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.45 7.57 -2.39 -0.02 1.44 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.08 2.47 7.49 -2.38 -0.02 2.45 16 34 H 0.34 13.63 8.28 -89.69 -0.74 12.88 16 35 H 0.07 2.81 7.52 -2.39 -0.02 2.79 16 36 H 0.03 1.22 7.94 -2.39 -0.02 1.20 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.19 -0.36 8.06 -2.91 -0.02 -0.39 16 42 H 0.20 -0.60 8.06 -2.91 -0.02 -0.62 16 43 H 0.19 1.33 7.76 -2.91 -0.02 1.31 16 Total: -1.00 -82.01 375.09 2.51 -79.50 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.27 Total: 14.45 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 6.63 Total: -11.71 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -5.15 Total: -120.31 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.26 Total: -8.24 kcal Total: -82.01 2.51 -79.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184596805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.462 kcal (2) G-P(sol) polarization free energy of solvation -82.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds