Wall clock time and date at job start Tue Mar 31 2020 12:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47347 * 299.99253 * 3 2 1 6 6 H 1.48507 * 109.47230 * 59.99597 * 3 2 1 7 7 C 1.37876 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.98032 * 125.00142 * 10 9 7 12 12 C 1.35247 * 107.86072 * 180.02562 * 11 10 9 13 13 C 1.40400 * 107.86744 * 0.02562 * 12 11 10 14 14 N 1.40192 * 125.97306 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99939 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00203 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99951 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00027 * 179.97438 * 17 15 14 19 19 H 1.08998 * 112.89937 * 331.75816 * 18 17 15 20 20 C 1.52948 * 113.75429 * 200.29862 * 18 17 15 21 21 C 1.54065 * 87.23431 * 270.84281 * 20 18 17 22 22 H 1.08994 * 113.04376 * 220.77973 * 21 20 18 23 23 O 1.41862 * 112.50901 * 92.10306 * 21 20 18 24 24 C 1.42425 * 116.24943 * 222.45962 * 23 21 20 25 25 C 1.53180 * 108.90937 * 58.19381 * 24 23 21 26 26 C 1.52787 * 108.70313 * 294.52803 * 25 24 23 27 27 C 1.52225 * 110.72751 * 54.45970 * 26 25 24 28 28 H 1.09002 * 111.35236 * 192.66403 * 27 26 25 29 29 N 1.31217 * 108.05545 * 0.26017 * 13 12 11 30 30 H 0.96996 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47112 * 59.99788 * 9 7 2 32 32 H 1.09003 * 109.47250 * 299.99389 * 9 7 2 33 33 H 1.08006 * 126.06661 * 0.02562 * 11 10 9 34 34 H 1.07991 * 126.06518 * 179.97438 * 12 11 10 35 35 H 0.97006 * 119.99946 * 179.97438 * 14 13 12 36 36 H 0.97000 * 120.00395 * 359.97438 * 17 15 14 37 37 H 1.08994 * 113.62648 * 156.19108 * 20 18 17 38 38 H 1.09001 * 113.38765 * 25.45449 * 20 18 17 39 39 H 1.09002 * 109.56512 * 298.36697 * 24 23 21 40 40 H 1.09004 * 109.57023 * 178.02377 * 24 23 21 41 41 H 1.08994 * 109.59448 * 54.28898 * 25 24 23 42 42 H 1.09001 * 109.59799 * 174.76302 * 25 24 23 43 43 H 1.08996 * 109.20245 * 174.51584 * 26 25 24 44 44 H 1.08997 * 109.20501 * 293.81512 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2607 -5.4421 0.5538 13 6 3.8703 -4.9141 -0.5955 14 7 4.9677 -5.4645 -1.2722 15 6 5.5319 -6.6043 -0.8263 16 8 5.0894 -7.1551 0.1634 17 7 6.5873 -7.1332 -1.4766 18 6 7.2009 -8.3719 -0.9915 19 1 7.0878 -8.5084 0.0839 20 6 8.6303 -8.5880 -1.4910 21 6 8.0170 -9.3082 -2.7070 22 1 8.5701 -10.2013 -2.9976 23 8 7.7910 -8.4323 -3.7998 24 6 6.5557 -8.5924 -4.4904 25 6 5.4041 -8.4051 -3.4979 26 6 5.4507 -9.5380 -2.4738 27 6 6.8205 -9.6117 -1.8138 28 1 6.9414 -10.5385 -1.2529 29 7 3.2371 -3.8121 -0.9218 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5570 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 1.5762 -4.7518 1.7378 34 1 3.5542 -6.3428 1.0724 35 1 5.3206 -5.0253 -2.0620 36 1 6.9406 -6.6937 -2.2659 37 1 9.2231 -9.2404 -0.8498 38 1 9.1445 -7.6612 -1.7455 39 1 6.5061 -9.5918 -4.9227 40 1 6.4805 -7.8466 -5.2818 41 1 5.5125 -7.4475 -2.9887 42 1 4.4538 -8.4329 -4.0310 43 1 4.6963 -9.3600 -1.7076 44 1 5.2367 -10.4825 -2.9741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190193739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:49 Heat of formation + Delta-G solvation = 48.940396 kcal Electronic energy + Delta-G solvation = -27228.576402 eV Core-core repulsion = 23377.501164 eV Total energy + Delta-G solvation = -3851.075238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68829 -40.49985 -39.13550 -36.35725 -34.64037 -33.84156 -33.41908 -32.93364 -30.74971 -29.26416 -27.73719 -26.66349 -25.32992 -24.14534 -23.10804 -22.09936 -21.19590 -20.38155 -20.02108 -19.28359 -18.09875 -16.69590 -16.62578 -16.55306 -16.20700 -15.97601 -15.48792 -15.39741 -14.80665 -14.54961 -14.35050 -14.16791 -14.01515 -13.74002 -13.15892 -12.82787 -12.61485 -12.34059 -12.32759 -12.20570 -11.80360 -11.59747 -11.50716 -11.26485 -11.04981 -10.91957 -10.86336 -10.47016 -10.35880 -10.25179 -10.05700 -9.67083 -9.65039 -9.45997 -8.87241 -8.62612 -8.08326 -7.39767 -6.23359 -4.28162 2.35817 2.67269 3.10965 3.23011 3.28594 3.30543 3.37238 3.62918 3.83177 4.03253 4.20533 4.30774 4.39378 4.42100 4.60018 4.68516 4.71904 4.99278 5.11893 5.14829 5.27559 5.29211 5.40784 5.45420 5.51561 5.54246 5.61314 5.73192 5.78877 5.84613 5.96385 6.07774 6.24851 6.36317 6.55868 6.61874 6.88860 7.02097 7.03229 7.13188 7.51361 7.71239 7.84136 7.99447 8.08368 8.60125 8.68215 8.82689 9.37519 10.85412 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002618 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.713560 B =10693.468954 C =10945.966460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.644 5.644 15 C 0.715 3.285 16 O -0.565 6.565 17 N -0.719 5.719 18 C 0.151 3.849 19 H 0.106 0.894 20 C -0.149 4.149 21 C 0.073 3.927 22 H 0.073 0.927 23 O -0.370 6.370 24 C 0.066 3.934 25 C -0.175 4.175 26 C -0.104 4.104 27 C -0.149 4.149 28 H 0.105 0.895 29 N -0.307 5.307 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.406 0.594 36 H 0.403 0.597 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.767 -20.411 -5.868 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.294 5.294 15 C 0.415 3.585 16 O -0.440 6.440 17 N -0.376 5.376 18 C 0.044 3.956 19 H 0.124 0.876 20 C -0.187 4.187 21 C 0.015 3.985 22 H 0.091 0.909 23 O -0.289 6.289 24 C -0.010 4.010 25 C -0.213 4.213 26 C -0.141 4.141 27 C -0.169 4.169 28 H 0.123 0.877 29 N -0.138 5.138 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.240 0.760 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.177 -19.579 -5.815 24.862 hybrid contribution 0.453 0.485 -0.193 0.691 sum 14.630 -19.094 -6.008 24.793 Atomic orbital electron populations 1.69926 1.06045 1.27495 1.49955 1.24947 0.94978 0.99557 0.94650 0.86279 0.80080 0.82489 0.77699 1.19558 1.20709 1.20778 1.21308 0.94048 0.89386 1.51784 0.91237 1.19734 0.85622 0.81339 0.99219 1.49053 1.23010 1.19771 1.18406 1.22553 1.00345 0.90337 0.96719 1.21501 1.02015 1.06483 1.01731 1.18772 0.90648 0.93996 0.94389 1.41407 1.31459 1.25079 1.31456 1.15556 0.80167 0.80025 0.82801 1.90863 1.64231 1.62396 1.26559 1.44959 1.33320 1.26944 1.32421 1.21476 0.92210 0.82738 0.99149 0.87621 1.23481 0.96362 1.02404 0.96415 1.22667 0.96262 0.93022 0.86521 0.90924 1.87405 1.38031 1.58961 1.44477 1.22524 0.83165 1.01376 0.93941 1.22585 0.99082 1.01505 0.98112 1.21000 0.96304 0.98239 0.98595 1.23124 0.95477 0.99979 0.98358 0.87719 1.77333 1.03692 1.16109 1.16691 0.92401 0.93769 0.92572 0.81577 0.82212 0.75940 0.76005 0.87385 0.89583 0.93345 0.88638 0.89262 0.91068 0.90816 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 8 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 10 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.72 9.61 -39.83 -0.38 -6.11 16 13 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 14 N -0.64 -10.01 5.45 -15.51 -0.08 -10.10 16 15 C 0.71 10.35 7.48 -86.92 -0.65 9.70 16 16 O -0.57 -9.95 13.13 5.28 0.07 -9.88 16 17 N -0.72 -7.47 2.76 -58.42 -0.16 -7.64 16 18 C 0.15 1.35 4.11 -67.67 -0.28 1.08 16 19 H 0.11 1.08 7.58 -51.93 -0.39 0.68 16 20 C -0.15 -0.98 7.56 -26.23 -0.20 -1.18 16 21 C 0.07 0.54 4.72 -26.50 -0.13 0.41 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 O -0.37 -3.21 9.38 -35.22 -0.33 -3.54 16 24 C 0.07 0.51 6.86 37.25 0.26 0.77 16 25 C -0.17 -1.57 5.67 -26.75 -0.15 -1.72 16 26 C -0.10 -0.95 5.55 -27.24 -0.15 -1.10 16 27 C -0.15 -1.17 3.93 -91.07 -0.36 -1.53 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 N -0.31 -7.09 12.41 31.44 0.39 -6.70 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 34 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 35 H 0.41 5.23 8.84 -40.82 -0.36 4.87 16 36 H 0.40 3.63 6.90 -40.82 -0.28 3.35 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.90 3.79 -51.93 -0.20 0.70 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -32.59 353.60 -9.39 -41.98 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.16 Total: 7.96 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.94 Total: -1.43 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.65 Total: -56.84 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.26 Total: -13.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.59 -9.39 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190193739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.924 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds