Wall clock time and date at job start Tue Mar 31 2020 12:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47347 * 299.99253 * 3 2 1 6 6 H 1.48507 * 109.47230 * 59.99597 * 3 2 1 7 7 C 1.37876 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.98032 * 125.00142 * 10 9 7 12 12 C 1.35247 * 107.86072 * 180.02562 * 11 10 9 13 13 C 1.40400 * 107.86744 * 0.02562 * 12 11 10 14 14 N 1.40192 * 125.97306 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99939 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00203 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99951 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00027 * 179.97438 * 17 15 14 19 19 H 1.08998 * 112.89937 * 331.75816 * 18 17 15 20 20 C 1.52948 * 113.75429 * 200.29862 * 18 17 15 21 21 C 1.54065 * 87.23431 * 270.84281 * 20 18 17 22 22 H 1.08994 * 113.04376 * 220.77973 * 21 20 18 23 23 O 1.41862 * 112.50901 * 92.10306 * 21 20 18 24 24 C 1.42425 * 116.24943 * 222.45962 * 23 21 20 25 25 C 1.53180 * 108.90937 * 58.19381 * 24 23 21 26 26 C 1.52787 * 108.70313 * 294.52803 * 25 24 23 27 27 C 1.52225 * 110.72751 * 54.45970 * 26 25 24 28 28 H 1.09002 * 111.35236 * 192.66403 * 27 26 25 29 29 N 1.31217 * 108.05545 * 0.26017 * 13 12 11 30 30 H 0.96996 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47112 * 59.99788 * 9 7 2 32 32 H 1.09003 * 109.47250 * 299.99389 * 9 7 2 33 33 H 1.08006 * 126.06661 * 0.02562 * 11 10 9 34 34 H 1.07991 * 126.06518 * 179.97438 * 12 11 10 35 35 H 0.97006 * 119.99946 * 179.97438 * 14 13 12 36 36 H 0.97000 * 120.00395 * 359.97438 * 17 15 14 37 37 H 1.08994 * 113.62648 * 156.19108 * 20 18 17 38 38 H 1.09001 * 113.38765 * 25.45449 * 20 18 17 39 39 H 1.09002 * 109.56512 * 298.36697 * 24 23 21 40 40 H 1.09004 * 109.57023 * 178.02377 * 24 23 21 41 41 H 1.08994 * 109.59448 * 54.28898 * 25 24 23 42 42 H 1.09001 * 109.59799 * 174.76302 * 25 24 23 43 43 H 1.08996 * 109.20245 * 174.51584 * 26 25 24 44 44 H 1.08997 * 109.20501 * 293.81512 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2607 -5.4421 0.5538 13 6 3.8703 -4.9141 -0.5955 14 7 4.9677 -5.4645 -1.2722 15 6 5.5319 -6.6043 -0.8263 16 8 5.0894 -7.1551 0.1634 17 7 6.5873 -7.1332 -1.4766 18 6 7.2009 -8.3719 -0.9915 19 1 7.0878 -8.5084 0.0839 20 6 8.6303 -8.5880 -1.4910 21 6 8.0170 -9.3082 -2.7070 22 1 8.5701 -10.2013 -2.9976 23 8 7.7910 -8.4323 -3.7998 24 6 6.5557 -8.5924 -4.4904 25 6 5.4041 -8.4051 -3.4979 26 6 5.4507 -9.5380 -2.4738 27 6 6.8205 -9.6117 -1.8138 28 1 6.9414 -10.5385 -1.2529 29 7 3.2371 -3.8121 -0.9218 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5570 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 1.5762 -4.7518 1.7378 34 1 3.5542 -6.3428 1.0724 35 1 5.3206 -5.0253 -2.0620 36 1 6.9406 -6.6937 -2.2659 37 1 9.2231 -9.2404 -0.8498 38 1 9.1445 -7.6612 -1.7455 39 1 6.5061 -9.5918 -4.9227 40 1 6.4805 -7.8466 -5.2818 41 1 5.5125 -7.4475 -2.9887 42 1 4.4538 -8.4329 -4.0310 43 1 4.6963 -9.3600 -1.7076 44 1 5.2367 -10.4825 -2.9741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190193739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:48 Heat of formation + Delta-G solvation = 28.273775 kcal Electronic energy + Delta-G solvation = -27229.472574 eV Core-core repulsion = 23377.501164 eV Total energy + Delta-G solvation = -3851.971410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55767 -41.95407 -40.33031 -37.08722 -36.12729 -35.32254 -34.51843 -34.00734 -32.50205 -30.92010 -28.63139 -28.29656 -26.11926 -25.15261 -24.58714 -23.25088 -22.21369 -21.77988 -21.32877 -20.18534 -19.25232 -18.67853 -18.12683 -17.45300 -17.08916 -16.86436 -16.79277 -16.31126 -16.18447 -15.83447 -15.57100 -15.44299 -15.08468 -14.80460 -14.48025 -14.24109 -13.82275 -13.78565 -13.67294 -13.30478 -12.94541 -12.88323 -12.72831 -12.36299 -12.30335 -12.21606 -12.04655 -11.94918 -11.65697 -11.53832 -11.38626 -11.14600 -11.01221 -10.72147 -10.31186 -9.81339 -9.66210 -9.04182 -8.32779 -6.46837 1.06936 1.13193 1.37309 1.38732 1.51961 1.70158 2.10725 2.36121 2.39998 2.72230 2.98781 3.13343 3.39992 3.61895 3.78682 3.95283 3.97825 4.00851 4.06298 4.28067 4.35563 4.55371 4.66703 4.71278 4.73693 4.80062 4.84938 4.89047 4.91588 4.95383 4.98255 5.03032 5.07110 5.10637 5.18043 5.23149 5.37437 5.57063 5.60974 5.76250 5.88189 5.97821 6.29901 6.43059 6.64165 6.75152 7.14190 7.23241 7.42799 8.74952 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002618 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.713560 B =10693.468954 C =10945.966460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.286 3.714 14 N -0.638 5.638 15 C 0.716 3.284 16 O -0.596 6.596 17 N -0.699 5.699 18 C 0.133 3.867 19 H 0.092 0.908 20 C -0.133 4.133 21 C 0.073 3.927 22 H 0.092 0.908 23 O -0.382 6.382 24 C 0.070 3.930 25 C -0.176 4.176 26 C -0.104 4.104 27 C -0.145 4.145 28 H 0.123 0.877 29 N -0.347 5.347 30 H 0.273 0.727 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.167 0.833 35 H 0.418 0.582 36 H 0.412 0.588 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.728 -21.276 -6.183 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.290 5.290 15 C 0.416 3.584 16 O -0.474 6.474 17 N -0.356 5.356 18 C 0.027 3.973 19 H 0.111 0.889 20 C -0.171 4.171 21 C 0.015 3.985 22 H 0.109 0.891 23 O -0.301 6.301 24 C -0.006 4.006 25 C -0.214 4.214 26 C -0.142 4.142 27 C -0.165 4.165 28 H 0.141 0.859 29 N -0.179 5.179 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.255 0.745 36 H 0.251 0.749 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.182 -20.478 -6.162 26.818 hybrid contribution -0.114 0.604 -0.105 0.624 sum 16.069 -19.874 -6.267 26.314 Atomic orbital electron populations 1.69999 1.07208 1.28700 1.50090 1.25738 0.95842 1.02727 0.93914 0.85295 0.78393 0.78380 0.78311 1.19938 1.19811 1.19507 1.21434 0.93375 0.90990 1.52635 0.92985 1.19332 0.85672 0.81524 0.98079 1.48815 1.23640 1.20365 1.19860 1.23151 1.00482 0.88952 0.96667 1.21670 1.02107 1.06656 1.01874 1.19061 0.90817 0.92930 0.94181 1.41420 1.30446 1.25466 1.31638 1.15666 0.80683 0.79468 0.82609 1.90831 1.65358 1.63120 1.28097 1.44867 1.31698 1.27078 1.31925 1.21766 0.94297 0.82447 0.98743 0.88947 1.23506 0.94719 1.02773 0.96108 1.22787 0.95835 0.93562 0.86323 0.89065 1.87392 1.38203 1.59575 1.44935 1.22540 0.82188 1.02309 0.93586 1.22573 0.99707 1.00738 0.98414 1.20983 0.96382 0.98858 0.97951 1.23169 0.94969 1.00015 0.98348 0.85902 1.77254 1.04799 1.17915 1.17888 0.91840 0.96073 0.92379 0.78268 0.81613 0.74517 0.74938 0.84738 0.89734 0.92349 0.87731 0.90611 0.91494 0.93777 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 13.29 21.45 0.28 -52.20 16 2 C 0.02 1.00 5.46 84.66 0.46 1.46 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.12 9.23 25.60 0.24 -30.88 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.31 6.26 85.63 0.54 14.84 16 10 N -0.34 -16.44 3.67 -351.83 -1.29 -17.73 16 11 C 0.06 2.25 11.44 83.52 0.96 3.21 16 12 C -0.29 -11.70 9.61 22.11 0.21 -11.49 16 13 C 0.29 11.64 8.11 133.31 1.08 12.72 16 14 N -0.64 -19.87 5.45 -321.23 -1.75 -21.62 16 15 C 0.72 20.60 7.48 179.06 1.34 21.94 16 16 O -0.60 -21.05 13.13 -4.02 -0.05 -21.11 16 17 N -0.70 -13.93 2.76 -456.99 -1.26 -15.19 16 18 C 0.13 2.19 4.11 45.16 0.19 2.38 16 19 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 20 C -0.13 -1.38 7.56 30.92 0.23 -1.15 16 21 C 0.07 0.85 4.72 30.74 0.15 1.00 16 22 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 23 O -0.38 -5.70 9.38 -148.94 -1.40 -7.09 16 24 C 0.07 0.94 6.86 72.04 0.49 1.44 16 25 C -0.18 -3.02 5.67 30.58 0.17 -2.85 16 26 C -0.10 -1.80 5.55 30.27 0.17 -1.63 16 27 C -0.15 -1.98 3.93 -11.09 -0.04 -2.02 16 28 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 29 N -0.35 -16.40 12.41 -54.43 -0.68 -17.08 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 33 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 34 H 0.17 6.49 5.91 -2.92 -0.02 6.47 16 35 H 0.42 10.72 8.84 -92.70 -0.82 9.90 16 36 H 0.41 6.93 6.90 -92.71 -0.64 6.29 16 37 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.48 3.79 -2.39 -0.01 1.47 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.76 353.60 1.65 -69.12 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.41 Total: 28.01 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.18 Total: 8.97 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -4.70 Total: -123.83 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.45 Total: -28.20 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.76 1.65 -69.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190193739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.391 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds