Wall clock time and date at job start Tue Mar 31 2020 12:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00174 * 2 1 4 4 H 1.48503 * 109.46837 * 270.00249 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47121 * 150.00119 * 3 2 1 7 7 C 1.37876 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00058 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46799 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97380 * 125.00203 * 10 9 7 12 12 C 1.35239 * 107.85801 * 179.74646 * 11 10 9 13 13 C 1.40403 * 107.86737 * 0.42800 * 12 11 10 14 14 N 1.40202 * 125.97341 * 179.82882 * 13 12 11 15 15 C 1.34775 * 119.99955 * 359.71605 * 14 13 12 16 16 O 1.21596 * 119.99644 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00226 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99967 * 180.02562 * 17 15 14 19 19 H 1.08992 * 113.17987 * 22.40651 * 18 17 15 20 20 C 1.55629 * 114.21220 * 249.65030 * 18 17 15 21 21 C 1.50010 * 84.25640 * 209.98861 * 20 18 17 22 22 H 1.09000 * 111.98363 * 284.19343 * 21 20 18 23 23 O 1.40849 * 127.43446 * 141.33452 * 21 20 18 24 24 C 1.44151 * 109.95889 * 197.24667 * 23 21 20 25 25 C 1.52412 * 112.91030 * 56.64673 * 24 23 21 26 26 C 1.54397 * 112.06612 * 309.97646 * 25 24 23 27 27 C 1.50576 * 114.05660 * 155.00074 * 18 17 15 28 28 H 1.09005 * 113.16603 * 35.76511 * 27 18 17 29 29 N 1.31206 * 108.05173 * 359.56575 * 13 12 11 30 30 H 0.97006 * 120.00030 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46808 * 60.00186 * 9 7 2 32 32 H 1.08991 * 109.47211 * 299.99854 * 9 7 2 33 33 H 1.08000 * 126.07066 * 0.02562 * 11 10 9 34 34 H 1.08004 * 126.06629 * 180.26100 * 12 11 10 35 35 H 0.96998 * 120.00004 * 179.71558 * 14 13 12 36 36 H 0.96998 * 119.99733 * 359.97438 * 17 15 14 37 37 H 1.09001 * 114.06584 * 323.80679 * 20 18 17 38 38 H 1.08994 * 114.06360 * 95.99570 * 20 18 17 39 39 H 1.09001 * 108.79786 * 295.76612 * 24 23 21 40 40 H 1.08996 * 108.79532 * 177.53154 * 24 23 21 41 41 H 1.08994 * 108.96131 * 189.31295 * 25 24 23 42 42 H 1.09000 * 108.95929 * 70.63963 * 25 24 23 43 43 H 1.08997 * 110.30281 * 172.72192 * 26 25 24 44 44 H 1.08999 * 110.30847 * 294.92779 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.2427 -4.6228 0.8925 12 6 3.2575 -5.4458 0.5436 13 6 3.8688 -4.9140 -0.6031 14 7 4.9648 -5.4643 -1.2825 15 6 5.5295 -6.6046 -0.8385 16 8 5.0881 -7.1563 0.1512 17 7 6.5827 -7.1340 -1.4919 18 6 7.1962 -8.3738 -1.0095 19 1 6.5260 -8.9723 -0.3927 20 6 8.6188 -8.1892 -0.4059 21 6 8.8441 -9.5889 -0.8962 22 1 8.3558 -10.3275 -0.2605 23 8 10.0151 -10.1149 -1.4759 24 6 9.7130 -11.3430 -2.1674 25 6 8.6332 -11.1755 -3.2300 26 6 7.3864 -10.4494 -2.6804 27 6 7.9144 -9.1584 -2.0753 28 1 8.4134 -8.5265 -2.8100 29 7 3.2315 -3.8149 -0.9309 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5566 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5789 -4.7533 1.7343 34 1 3.5481 -6.3502 1.0575 35 1 5.3165 -5.0244 -2.0722 36 1 6.9340 -6.6944 -2.2820 37 1 9.2231 -7.4377 -0.9139 38 1 8.6314 -8.0881 0.6793 39 1 9.3780 -12.0825 -1.4400 40 1 10.6216 -11.7099 -2.6448 41 1 8.3383 -12.1598 -3.5935 42 1 9.0406 -10.6000 -4.0612 43 1 6.6891 -10.2306 -3.4891 44 1 6.9021 -11.0557 -1.9150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251928271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:55 Heat of formation + Delta-G solvation = 54.191296 kcal Electronic energy + Delta-G solvation = -26055.180973 eV Core-core repulsion = 22204.333431 eV Total energy + Delta-G solvation = -3850.847542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57063 -40.59315 -39.37059 -36.92670 -34.65840 -33.78240 -33.53435 -33.00771 -30.76486 -29.26851 -27.96012 -26.69400 -25.18756 -23.52584 -22.87248 -21.92794 -21.17748 -21.07948 -20.28879 -19.71870 -17.94597 -17.32309 -16.57276 -16.52879 -16.20244 -15.63561 -15.37971 -15.25635 -14.99338 -14.66679 -14.36733 -14.16295 -13.84417 -13.57795 -13.29037 -12.77113 -12.65623 -12.55597 -12.28937 -12.24094 -12.18465 -11.77020 -11.72874 -11.41901 -11.06339 -10.99852 -10.88603 -10.62652 -10.41242 -10.24813 -10.08592 -9.69856 -9.48082 -9.46957 -9.20844 -8.62220 -8.08770 -7.40129 -6.23147 -4.28053 2.35094 2.65977 3.06083 3.12740 3.24477 3.30185 3.35410 3.63202 3.82307 3.85378 4.19879 4.27178 4.35857 4.37633 4.41436 4.53383 4.67808 4.71922 4.98433 5.08409 5.09321 5.11937 5.27162 5.32752 5.42218 5.46994 5.52652 5.61033 5.66924 5.75050 5.81492 5.88769 6.20135 6.32282 6.55629 6.60403 6.70422 6.88498 7.02360 7.12168 7.50914 7.70874 7.83591 7.98427 8.08393 8.58345 8.67954 8.82275 9.37445 10.85488 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002055 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.479677 B =13622.077744 C =13959.180047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.643 5.643 15 C 0.714 3.286 16 O -0.567 6.567 17 N -0.730 5.730 18 C 0.164 3.836 19 H 0.126 0.874 20 C -0.126 4.126 21 C 0.049 3.951 22 H 0.082 0.918 23 O -0.360 6.360 24 C 0.060 3.940 25 C -0.153 4.153 26 C -0.107 4.107 27 C -0.170 4.170 28 H 0.104 0.896 29 N -0.308 5.308 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.407 0.593 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.858 -22.113 -5.138 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.443 6.443 17 N -0.385 5.385 18 C 0.057 3.943 19 H 0.144 0.856 20 C -0.165 4.165 21 C -0.010 4.010 22 H 0.100 0.900 23 O -0.278 6.278 24 C -0.016 4.016 25 C -0.190 4.190 26 C -0.145 4.145 27 C -0.190 4.190 28 H 0.122 0.878 29 N -0.139 5.139 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.312 -21.365 -5.042 27.349 hybrid contribution 0.568 0.641 -0.376 0.936 sum 16.881 -20.724 -5.418 27.272 Atomic orbital electron populations 1.69920 1.06027 1.27588 1.49842 1.24950 0.94991 0.99547 0.94657 0.86325 0.79664 0.82147 0.78338 1.20362 1.21003 1.19731 1.21262 0.93995 0.89399 1.51927 0.91314 1.19731 0.85621 0.81311 0.99240 1.49051 1.23291 1.19772 1.18125 1.22555 1.00387 0.90199 0.96786 1.21508 1.02074 1.06296 1.01877 1.18783 0.90662 0.94055 0.94386 1.41392 1.31501 1.25025 1.31371 1.15667 0.79912 0.80152 0.82925 1.90862 1.64533 1.62265 1.26624 1.44938 1.33614 1.27494 1.32459 1.21923 0.91990 0.84695 0.95660 0.85593 1.23273 0.96468 0.94492 1.02315 1.22901 0.86020 0.96433 0.95658 0.90018 1.87949 1.31080 1.39629 1.69164 1.22565 0.99029 0.85874 0.94143 1.22145 0.96039 1.01667 0.99178 1.21570 0.96867 0.95105 1.00959 1.23805 0.99808 0.97369 0.98002 0.87814 1.77317 1.03824 1.16379 1.16372 0.92352 0.93768 0.92528 0.81539 0.82187 0.75875 0.76741 0.88605 0.89787 0.93077 0.88862 0.90587 0.91251 0.91141 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 10 N -0.32 -7.50 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.73 9.61 -39.83 -0.38 -6.11 16 13 C 0.28 5.55 8.11 -154.36 -1.25 4.30 16 14 N -0.64 -9.90 5.46 -15.50 -0.08 -9.98 16 15 C 0.71 10.23 8.53 -86.92 -0.74 9.49 16 16 O -0.57 -9.98 13.06 5.28 0.07 -9.91 16 17 N -0.73 -7.03 5.39 -62.12 -0.33 -7.36 16 18 C 0.16 1.40 4.03 -71.38 -0.29 1.11 16 19 H 0.13 1.24 7.42 -51.93 -0.39 0.86 16 20 C -0.13 -1.00 7.80 -29.90 -0.23 -1.24 16 21 C 0.05 0.37 3.91 -30.14 -0.12 0.26 16 22 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 23 O -0.36 -3.15 10.99 -34.61 -0.38 -3.53 16 24 C 0.06 0.36 6.67 36.86 0.25 0.60 16 25 C -0.15 -0.79 5.95 -26.30 -0.16 -0.95 16 26 C -0.11 -0.66 6.20 -26.49 -0.16 -0.82 16 27 C -0.17 -1.18 3.15 -93.69 -0.30 -1.47 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 N -0.31 -7.11 12.42 31.44 0.39 -6.72 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 34 H 0.16 3.13 5.91 -52.48 -0.31 2.82 16 35 H 0.41 5.03 8.84 -40.82 -0.36 4.67 16 36 H 0.40 2.76 8.76 -40.82 -0.36 2.40 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.27 8.12 -51.93 -0.42 -0.16 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.42 8.03 -51.93 -0.42 0.01 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -33.37 363.79 -9.83 -43.21 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.43 Total: 5.68 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.03 Total: -0.90 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.48 Total: -56.43 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.31 Total: -13.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.37 -9.83 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251928271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.397 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds