Wall clock time and date at job start Tue Mar 31 2020 12:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00174 * 2 1 4 4 H 1.48503 * 109.46837 * 270.00249 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47121 * 150.00119 * 3 2 1 7 7 C 1.37876 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00058 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46799 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97380 * 125.00203 * 10 9 7 12 12 C 1.35239 * 107.85801 * 179.74646 * 11 10 9 13 13 C 1.40403 * 107.86737 * 0.42800 * 12 11 10 14 14 N 1.40202 * 125.97341 * 179.82882 * 13 12 11 15 15 C 1.34775 * 119.99955 * 359.71605 * 14 13 12 16 16 O 1.21596 * 119.99644 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00226 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99967 * 180.02562 * 17 15 14 19 19 H 1.08992 * 113.17987 * 22.40651 * 18 17 15 20 20 C 1.55629 * 114.21220 * 249.65030 * 18 17 15 21 21 C 1.50010 * 84.25640 * 209.98861 * 20 18 17 22 22 H 1.09000 * 111.98363 * 284.19343 * 21 20 18 23 23 O 1.40849 * 127.43446 * 141.33452 * 21 20 18 24 24 C 1.44151 * 109.95889 * 197.24667 * 23 21 20 25 25 C 1.52412 * 112.91030 * 56.64673 * 24 23 21 26 26 C 1.54397 * 112.06612 * 309.97646 * 25 24 23 27 27 C 1.50576 * 114.05660 * 155.00074 * 18 17 15 28 28 H 1.09005 * 113.16603 * 35.76511 * 27 18 17 29 29 N 1.31206 * 108.05173 * 359.56575 * 13 12 11 30 30 H 0.97006 * 120.00030 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46808 * 60.00186 * 9 7 2 32 32 H 1.08991 * 109.47211 * 299.99854 * 9 7 2 33 33 H 1.08000 * 126.07066 * 0.02562 * 11 10 9 34 34 H 1.08004 * 126.06629 * 180.26100 * 12 11 10 35 35 H 0.96998 * 120.00004 * 179.71558 * 14 13 12 36 36 H 0.96998 * 119.99733 * 359.97438 * 17 15 14 37 37 H 1.09001 * 114.06584 * 323.80679 * 20 18 17 38 38 H 1.08994 * 114.06360 * 95.99570 * 20 18 17 39 39 H 1.09001 * 108.79786 * 295.76612 * 24 23 21 40 40 H 1.08996 * 108.79532 * 177.53154 * 24 23 21 41 41 H 1.08994 * 108.96131 * 189.31295 * 25 24 23 42 42 H 1.09000 * 108.95929 * 70.63963 * 25 24 23 43 43 H 1.08997 * 110.30281 * 172.72192 * 26 25 24 44 44 H 1.08999 * 110.30847 * 294.92779 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.2427 -4.6228 0.8925 12 6 3.2575 -5.4458 0.5436 13 6 3.8688 -4.9140 -0.6031 14 7 4.9648 -5.4643 -1.2825 15 6 5.5295 -6.6046 -0.8385 16 8 5.0881 -7.1563 0.1512 17 7 6.5827 -7.1340 -1.4919 18 6 7.1962 -8.3738 -1.0095 19 1 6.5260 -8.9723 -0.3927 20 6 8.6188 -8.1892 -0.4059 21 6 8.8441 -9.5889 -0.8962 22 1 8.3558 -10.3275 -0.2605 23 8 10.0151 -10.1149 -1.4759 24 6 9.7130 -11.3430 -2.1674 25 6 8.6332 -11.1755 -3.2300 26 6 7.3864 -10.4494 -2.6804 27 6 7.9144 -9.1584 -2.0753 28 1 8.4134 -8.5265 -2.8100 29 7 3.2315 -3.8149 -0.9309 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5566 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5789 -4.7533 1.7343 34 1 3.5481 -6.3502 1.0575 35 1 5.3165 -5.0244 -2.0722 36 1 6.9340 -6.6944 -2.2820 37 1 9.2231 -7.4377 -0.9139 38 1 8.6314 -8.0881 0.6793 39 1 9.3780 -12.0825 -1.4400 40 1 10.6216 -11.7099 -2.6448 41 1 8.3383 -12.1598 -3.5935 42 1 9.0406 -10.6000 -4.0612 43 1 6.6891 -10.2306 -3.4891 44 1 6.9021 -11.0557 -1.9150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251928271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:54 Heat of formation + Delta-G solvation = 31.836958 kcal Electronic energy + Delta-G solvation = -26056.150330 eV Core-core repulsion = 22204.333431 eV Total energy + Delta-G solvation = -3851.816899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36773 -41.98399 -40.58635 -37.63982 -36.14380 -35.29176 -34.40040 -34.04879 -32.50839 -30.90892 -28.61932 -28.41444 -26.05646 -24.91959 -23.94119 -22.94407 -22.13723 -21.83802 -21.60423 -21.02189 -19.10145 -18.68658 -18.30896 -17.75180 -16.98064 -16.79608 -16.57130 -16.21701 -16.09286 -15.77275 -15.59426 -15.31999 -15.16355 -14.51614 -14.26629 -14.16346 -13.86738 -13.78278 -13.67266 -13.20864 -13.15272 -12.91505 -12.75419 -12.73114 -12.31034 -12.27822 -12.05122 -11.93755 -11.62519 -11.57392 -11.37935 -11.16102 -11.09863 -10.71352 -10.17848 -9.99886 -9.70584 -9.03789 -8.31799 -6.45873 1.08720 1.14652 1.38787 1.39487 1.51044 1.71031 2.10682 2.36225 2.40217 2.56702 2.99601 3.16274 3.28548 3.55448 3.77047 3.92591 3.98862 4.03244 4.16356 4.24579 4.30007 4.43233 4.48904 4.58793 4.73756 4.77880 4.86051 4.90095 4.91197 4.96296 4.96898 5.00932 5.05510 5.10765 5.17742 5.23124 5.34794 5.55520 5.58008 5.78228 5.90489 5.99502 6.16959 6.31091 6.64997 6.77664 7.16627 7.23921 7.43930 8.75530 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002055 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.479677 B =13622.077744 C =13959.180047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.713 3.287 16 O -0.600 6.600 17 N -0.708 5.708 18 C 0.157 3.843 19 H 0.114 0.886 20 C -0.124 4.124 21 C 0.047 3.953 22 H 0.086 0.914 23 O -0.381 6.381 24 C 0.054 3.946 25 C -0.148 4.148 26 C -0.110 4.110 27 C -0.157 4.157 28 H 0.110 0.890 29 N -0.348 5.348 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.168 0.832 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.315 -22.799 -5.621 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.288 5.288 15 C 0.413 3.587 16 O -0.478 6.478 17 N -0.363 5.363 18 C 0.052 3.948 19 H 0.132 0.868 20 C -0.163 4.163 21 C -0.011 4.011 22 H 0.103 0.897 23 O -0.300 6.300 24 C -0.022 4.022 25 C -0.185 4.185 26 C -0.147 4.147 27 C -0.177 4.177 28 H 0.128 0.872 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.217 0.783 34 H 0.185 0.815 35 H 0.258 0.742 36 H 0.252 0.748 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.819 -22.084 -5.567 28.917 hybrid contribution 0.203 0.694 -0.237 0.761 sum 18.023 -21.390 -5.804 28.566 Atomic orbital electron populations 1.69996 1.07185 1.28729 1.50005 1.25747 0.95866 1.02733 0.93962 0.85342 0.78347 0.78145 0.78538 1.19785 1.19723 1.19771 1.21401 0.93369 0.90981 1.52694 0.92968 1.19330 0.85685 0.81519 0.98097 1.48811 1.23955 1.20373 1.19605 1.23158 1.00545 0.88837 0.96744 1.21690 1.02142 1.06487 1.02028 1.19086 0.90864 0.92971 0.94191 1.41400 1.30424 1.25380 1.31613 1.15822 0.80501 0.79621 0.82768 1.90833 1.65724 1.63012 1.28200 1.44816 1.31867 1.27398 1.32242 1.22021 0.91970 0.84159 0.96659 0.86832 1.23253 0.95810 0.95177 1.02087 1.22868 0.86063 0.96238 0.95979 0.89664 1.87922 1.31684 1.40768 1.69591 1.22762 0.99981 0.85025 0.94446 1.22116 0.95225 1.02387 0.98794 1.21612 0.97406 0.94697 1.00994 1.23716 0.98871 0.97444 0.97631 0.87236 1.77236 1.04934 1.18207 1.17557 0.91864 0.96077 0.92349 0.78265 0.81512 0.74215 0.74845 0.88020 0.90284 0.92407 0.87648 0.89050 0.91253 0.91027 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 13.29 21.45 0.28 -52.01 16 2 C 0.02 0.95 5.46 84.65 0.46 1.42 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -30.97 9.24 25.60 0.24 -30.74 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.23 6.26 85.63 0.54 14.76 16 10 N -0.35 -16.36 3.67 -351.85 -1.29 -17.65 16 11 C 0.06 2.22 11.44 83.52 0.96 3.17 16 12 C -0.29 -11.57 9.61 22.11 0.21 -11.35 16 13 C 0.28 11.41 8.11 133.31 1.08 12.49 16 14 N -0.64 -19.04 5.46 -321.22 -1.75 -20.79 16 15 C 0.71 19.69 8.53 179.06 1.53 21.21 16 16 O -0.60 -20.71 13.06 -4.02 -0.05 -20.76 16 17 N -0.71 -12.52 5.39 -468.69 -2.53 -15.05 16 18 C 0.16 2.50 4.03 42.75 0.17 2.67 16 19 H 0.11 2.17 7.42 -2.39 -0.02 2.15 16 20 C -0.12 -1.82 7.80 28.54 0.22 -1.60 16 21 C 0.05 0.66 3.91 28.39 0.11 0.77 16 22 H 0.09 1.11 7.86 -2.39 -0.02 1.10 16 23 O -0.38 -6.07 10.99 -146.77 -1.61 -7.68 16 24 C 0.05 0.53 6.67 71.79 0.48 1.01 16 25 C -0.15 -1.20 5.95 30.87 0.18 -1.02 16 26 C -0.11 -1.13 6.20 30.75 0.19 -0.94 16 27 C -0.16 -1.90 3.15 -12.78 -0.04 -1.94 16 28 H 0.11 1.23 8.14 -2.38 -0.02 1.22 16 29 N -0.35 -16.27 12.42 -54.43 -0.68 -16.95 16 30 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 33 H 0.20 6.29 8.06 -2.91 -0.02 6.27 16 34 H 0.17 6.42 5.91 -2.91 -0.02 6.40 16 35 H 0.42 9.93 8.84 -92.71 -0.82 9.11 16 36 H 0.41 4.84 8.76 -92.71 -0.81 4.02 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 0.49 8.12 -2.39 -0.02 0.47 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.73 8.03 -2.39 -0.02 0.72 16 Total: -1.00 -71.62 363.79 0.14 -71.49 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.59 Total: 23.69 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.33 Total: 9.92 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.96 Total: -122.45 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.67 Total: -28.44 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.62 0.14 -71.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251928271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.325 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds