Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99545 * 3 2 1 5 5 H 1.48498 * 109.47088 * 29.99847 * 3 2 1 6 6 H 1.48500 * 109.46827 * 149.99780 * 3 2 1 7 7 C 1.37882 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00000 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.34963 * 125.97511 * 125.00111 * 10 9 7 12 12 C 1.35251 * 107.85862 * 179.97438 * 11 10 9 13 13 C 1.40398 * 107.86368 * 359.97438 * 12 11 10 14 14 N 1.40198 * 125.96948 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99815 * 359.97438 * 14 13 12 16 16 O 1.21594 * 120.00006 * 354.90268 * 15 14 13 17 17 N 1.34779 * 119.99716 * 175.17316 * 15 14 13 18 18 C 1.47068 * 120.24851 * 184.98441 * 17 15 14 19 19 C 1.53500 * 107.51224 * 229.93203 * 18 17 15 20 20 O 1.42700 * 108.52725 * 304.89870 * 19 18 17 21 21 C 1.42814 * 115.45703 * 64.22626 * 20 19 18 22 22 H 1.09004 * 111.91760 * 67.49233 * 21 20 19 23 23 C 1.55298 * 107.32736 * 191.53912 * 21 20 19 24 24 C 1.55407 * 104.06400 * 77.74509 * 23 21 20 25 25 C 1.54037 * 106.46142 * 23.83654 * 24 23 21 26 26 C 1.45888 * 120.25367 * 4.71253 * 17 15 14 27 27 H 1.09002 * 109.90432 * 13.69359 * 26 17 15 28 28 N 1.31200 * 108.05912 * 0.24115 * 13 12 11 29 29 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46990 * 59.99805 * 9 7 2 31 31 H 1.09001 * 109.46823 * 300.00278 * 9 7 2 32 32 H 1.08001 * 126.07239 * 359.97438 * 11 10 9 33 33 H 1.08005 * 126.06401 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00335 * 180.02562 * 14 13 12 35 35 H 1.08991 * 109.85369 * 349.43731 * 18 17 15 36 36 H 1.09006 * 109.84823 * 110.43011 * 18 17 15 37 37 H 1.09001 * 109.62905 * 64.60695 * 19 18 17 38 38 H 1.08993 * 109.63005 * 185.19080 * 19 18 17 39 39 H 1.08996 * 110.49558 * 196.53427 * 23 21 20 40 40 H 1.09003 * 110.49160 * 319.19729 * 23 21 20 41 41 H 1.09002 * 109.99320 * 264.64045 * 24 23 21 42 42 H 1.08995 * 110.17073 * 143.12983 * 24 23 21 43 43 H 1.08998 * 110.07901 * 240.70912 * 25 24 23 44 44 H 1.09003 * 110.07625 * 119.15800 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2419 -4.6224 0.8952 12 6 3.2602 -5.4430 0.5504 13 6 3.8677 -4.9155 -0.6002 14 7 4.9636 -5.4666 -1.2790 15 6 5.5289 -6.6060 -0.8332 16 8 5.1494 -7.1060 0.2082 17 7 6.5186 -7.1882 -1.5389 18 6 7.0644 -8.4870 -1.1169 19 6 8.5933 -8.3556 -1.0801 20 8 9.0402 -7.9012 -2.3569 21 6 8.5992 -6.5960 -2.7329 22 1 9.0417 -5.8210 -2.1070 23 6 8.9326 -6.4109 -4.2383 24 6 7.8199 -7.2095 -4.9725 25 6 6.6247 -7.2843 -4.0038 26 6 7.0525 -6.5377 -2.7306 27 1 6.7191 -5.5006 -2.7681 28 7 3.2341 -3.8137 -0.9259 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 1.5779 -4.7521 1.7370 33 1 3.5539 -6.3442 1.0683 34 1 5.3156 -5.0275 -2.0691 35 1 6.6908 -8.7408 -0.1250 36 1 6.7763 -9.2590 -1.8305 37 1 8.8806 -7.6353 -0.3141 38 1 9.0390 -9.3256 -0.8602 39 1 8.8925 -5.3564 -4.5112 40 1 9.9137 -6.8279 -4.4659 41 1 8.1744 -8.2134 -5.2066 42 1 7.5279 -6.6933 -5.8870 43 1 6.3974 -8.3242 -3.7694 44 1 5.7536 -6.8010 -4.4463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266415947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = 24.139181 kcal Electronic energy + Delta-G solvation = -27155.172502 eV Core-core repulsion = 23303.021803 eV Total energy + Delta-G solvation = -3852.150700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26868 -40.32560 -38.93227 -36.13097 -34.97976 -34.67809 -33.33092 -31.08373 -29.95511 -29.26390 -28.54546 -27.39803 -26.50183 -24.00986 -22.93845 -21.87025 -20.95690 -20.66788 -20.12233 -18.94329 -18.27959 -17.18703 -16.61247 -16.54925 -16.21408 -15.93287 -15.51570 -15.09151 -15.03567 -14.65460 -14.35386 -14.16395 -13.97263 -13.51809 -13.14705 -12.79039 -12.48202 -12.33489 -12.27969 -12.04499 -11.93238 -11.77721 -11.61008 -11.52698 -11.04497 -11.03976 -10.89802 -10.67382 -10.45052 -10.31606 -10.25269 -10.06040 -9.68790 -9.49058 -8.78924 -8.63192 -8.10845 -7.42081 -6.24466 -4.29467 2.21758 2.62297 3.05776 3.23340 3.28813 3.29288 3.34263 3.36155 3.78990 4.03378 4.08789 4.24590 4.32500 4.41060 4.65187 4.78301 4.86455 4.91169 5.00702 5.10664 5.13585 5.20175 5.29923 5.34956 5.43867 5.52142 5.58446 5.59225 5.74694 5.80093 5.84352 5.95938 6.09249 6.29998 6.53145 6.58048 6.81160 6.87322 6.95635 7.08119 7.46896 7.68612 7.77244 7.92438 8.06289 8.50479 8.65233 8.80620 9.36112 10.84259 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002873 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.305862 B = 9742.115688 C =10598.275418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.052 3.948 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.643 5.643 15 C 0.717 3.283 16 O -0.563 6.563 17 N -0.622 5.622 18 C 0.096 3.904 19 C 0.049 3.951 20 O -0.373 6.373 21 C 0.079 3.921 22 H 0.080 0.920 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.132 4.132 26 C 0.105 3.895 27 H 0.096 0.904 28 N -0.307 5.307 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.405 0.595 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.697 -16.557 -6.829 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.317 4.317 13 C 0.020 3.980 14 N -0.295 5.295 15 C 0.418 3.582 16 O -0.438 6.438 17 N -0.360 5.360 18 C -0.027 4.027 19 C -0.029 4.029 20 O -0.291 6.291 21 C 0.021 3.979 22 H 0.097 0.903 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.171 4.171 26 C -0.001 4.001 27 H 0.114 0.886 28 N -0.138 5.138 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.242 0.758 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.187 -15.856 -6.995 23.715 hybrid contribution 0.317 0.745 0.313 0.868 sum 16.504 -15.112 -6.683 23.354 Atomic orbital electron populations 1.69919 1.06043 1.27614 1.49807 1.24946 0.94981 0.99540 0.94621 0.86327 0.79672 0.82145 0.78353 1.20342 1.20976 1.19725 1.21263 0.93996 0.89402 1.51998 0.91315 1.19736 0.85608 0.81293 0.99251 1.49057 1.23132 1.19757 1.18228 1.22552 1.00269 0.90276 0.96727 1.21487 1.02057 1.06492 1.01708 1.18797 0.90671 0.94087 0.94442 1.41574 1.31441 1.25064 1.31371 1.15544 0.79469 0.80049 0.83108 1.90859 1.64825 1.65291 1.22875 1.46943 1.38294 1.22567 1.28148 1.22233 0.93837 0.83761 1.02861 1.22996 0.93370 1.00766 0.85730 1.87805 1.73482 1.32291 1.35557 1.23482 0.91994 0.85767 0.96706 0.90254 1.22685 1.00018 1.01008 0.91822 1.22250 0.94412 1.00844 0.97926 1.22386 0.98679 1.01620 0.94433 1.22353 0.94924 0.97316 0.85460 0.88633 1.77314 1.03860 1.16039 1.16614 0.92330 0.93759 0.92519 0.81493 0.82276 0.75821 0.87494 0.90752 0.92478 0.87493 0.89790 0.90045 0.91232 0.91342 0.90737 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.73 9.23 -34.44 -0.32 -15.05 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 10 N -0.32 -7.50 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -5.79 9.61 -39.83 -0.38 -6.17 16 13 C 0.27 5.62 8.11 -154.37 -1.25 4.37 16 14 N -0.64 -10.47 5.34 -15.51 -0.08 -10.55 16 15 C 0.72 11.08 8.24 -86.91 -0.72 10.36 16 16 O -0.56 -10.29 12.90 5.28 0.07 -10.22 16 17 N -0.62 -7.12 2.72 -170.02 -0.46 -7.58 16 18 C 0.10 0.91 6.37 -3.47 -0.02 0.89 16 19 C 0.05 0.39 7.01 37.42 0.26 0.65 16 20 O -0.37 -3.38 10.00 -35.23 -0.35 -3.73 16 21 C 0.08 0.66 3.99 -24.58 -0.10 0.56 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 C -0.12 -0.77 6.47 -24.23 -0.16 -0.93 16 24 C -0.12 -0.79 6.76 -24.91 -0.17 -0.95 16 25 C -0.13 -1.09 6.40 -25.84 -0.17 -1.26 16 26 C 0.10 0.97 2.94 -66.98 -0.20 0.77 16 27 H 0.10 0.86 5.79 -51.93 -0.30 0.56 16 28 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.16 3.16 5.93 -52.48 -0.31 2.85 16 34 H 0.40 5.56 6.35 -40.82 -0.26 5.30 16 35 H 0.11 1.11 7.01 -51.93 -0.36 0.74 16 36 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.67 7.15 -51.93 -0.37 0.30 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -32.82 354.73 -9.33 -42.15 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.19 Total: 5.10 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.54 Total: 2.25 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.35 Total: -57.22 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.28 Total: -13.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.82 -9.33 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266415947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.291 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds