Wall clock time and date at job start Tue Mar 31 2020 12:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99545 * 3 2 1 5 5 H 1.48498 * 109.47088 * 29.99847 * 3 2 1 6 6 H 1.48500 * 109.46827 * 149.99780 * 3 2 1 7 7 C 1.37882 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00000 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.34963 * 125.97511 * 125.00111 * 10 9 7 12 12 C 1.35251 * 107.85862 * 179.97438 * 11 10 9 13 13 C 1.40398 * 107.86368 * 359.97438 * 12 11 10 14 14 N 1.40198 * 125.96948 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99815 * 359.97438 * 14 13 12 16 16 O 1.21594 * 120.00006 * 354.90268 * 15 14 13 17 17 N 1.34779 * 119.99716 * 175.17316 * 15 14 13 18 18 C 1.47068 * 120.24851 * 184.98441 * 17 15 14 19 19 C 1.53500 * 107.51224 * 229.93203 * 18 17 15 20 20 O 1.42700 * 108.52725 * 304.89870 * 19 18 17 21 21 C 1.42814 * 115.45703 * 64.22626 * 20 19 18 22 22 H 1.09004 * 111.91760 * 67.49233 * 21 20 19 23 23 C 1.55298 * 107.32736 * 191.53912 * 21 20 19 24 24 C 1.55407 * 104.06400 * 77.74509 * 23 21 20 25 25 C 1.54037 * 106.46142 * 23.83654 * 24 23 21 26 26 C 1.45888 * 120.25367 * 4.71253 * 17 15 14 27 27 H 1.09002 * 109.90432 * 13.69359 * 26 17 15 28 28 N 1.31200 * 108.05912 * 0.24115 * 13 12 11 29 29 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46990 * 59.99805 * 9 7 2 31 31 H 1.09001 * 109.46823 * 300.00278 * 9 7 2 32 32 H 1.08001 * 126.07239 * 359.97438 * 11 10 9 33 33 H 1.08005 * 126.06401 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00335 * 180.02562 * 14 13 12 35 35 H 1.08991 * 109.85369 * 349.43731 * 18 17 15 36 36 H 1.09006 * 109.84823 * 110.43011 * 18 17 15 37 37 H 1.09001 * 109.62905 * 64.60695 * 19 18 17 38 38 H 1.08993 * 109.63005 * 185.19080 * 19 18 17 39 39 H 1.08996 * 110.49558 * 196.53427 * 23 21 20 40 40 H 1.09003 * 110.49160 * 319.19729 * 23 21 20 41 41 H 1.09002 * 109.99320 * 264.64045 * 24 23 21 42 42 H 1.08995 * 110.17073 * 143.12983 * 24 23 21 43 43 H 1.08998 * 110.07901 * 240.70912 * 25 24 23 44 44 H 1.09003 * 110.07625 * 119.15800 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2419 -4.6224 0.8952 12 6 3.2602 -5.4430 0.5504 13 6 3.8677 -4.9155 -0.6002 14 7 4.9636 -5.4666 -1.2790 15 6 5.5289 -6.6060 -0.8332 16 8 5.1494 -7.1060 0.2082 17 7 6.5186 -7.1882 -1.5389 18 6 7.0644 -8.4870 -1.1169 19 6 8.5933 -8.3556 -1.0801 20 8 9.0402 -7.9012 -2.3569 21 6 8.5992 -6.5960 -2.7329 22 1 9.0417 -5.8210 -2.1070 23 6 8.9326 -6.4109 -4.2383 24 6 7.8199 -7.2095 -4.9725 25 6 6.6247 -7.2843 -4.0038 26 6 7.0525 -6.5377 -2.7306 27 1 6.7191 -5.5006 -2.7681 28 7 3.2341 -3.8137 -0.9259 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 1.5779 -4.7521 1.7370 33 1 3.5539 -6.3442 1.0683 34 1 5.3156 -5.0275 -2.0691 35 1 6.6908 -8.7408 -0.1250 36 1 6.7763 -9.2590 -1.8305 37 1 8.8806 -7.6353 -0.3141 38 1 9.0390 -9.3256 -0.8602 39 1 8.8925 -5.3564 -4.5112 40 1 9.9137 -6.8279 -4.4659 41 1 8.1744 -8.2134 -5.2066 42 1 7.5279 -6.6933 -5.8870 43 1 6.3974 -8.3242 -3.7694 44 1 5.7536 -6.8010 -4.4463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266415947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:28 Heat of formation + Delta-G solvation = 3.942184 kcal Electronic energy + Delta-G solvation = -27156.048310 eV Core-core repulsion = 23303.021803 eV Total energy + Delta-G solvation = -3853.026507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45379 -41.67242 -40.02213 -36.86959 -36.27646 -35.77512 -35.24737 -32.81000 -31.06452 -30.68042 -29.19196 -28.68852 -27.90594 -25.27730 -24.38817 -23.05497 -22.10790 -21.57686 -21.47206 -20.07270 -19.35066 -18.69736 -18.28628 -17.66286 -17.24079 -16.92140 -16.78233 -16.44510 -16.03733 -15.96726 -15.73367 -15.38827 -15.00128 -14.55461 -14.44819 -14.18067 -13.99466 -13.76566 -13.62862 -13.13340 -12.93364 -12.77946 -12.72933 -12.64006 -12.30157 -12.23143 -12.13082 -12.07034 -11.75285 -11.63004 -11.42100 -11.31718 -11.16331 -10.93187 -10.72444 -9.84434 -9.64512 -9.06551 -8.33112 -6.47289 0.98047 1.07057 1.38235 1.38808 1.50257 1.62287 1.93640 2.31232 2.34666 2.69588 2.71323 2.98634 3.39989 3.59093 3.71378 3.87639 3.98225 4.10655 4.19698 4.24709 4.29554 4.34795 4.46637 4.56038 4.68365 4.72247 4.74649 4.84186 4.86402 4.87978 4.92348 4.99887 5.04846 5.09955 5.20288 5.23041 5.40203 5.43626 5.55594 5.64468 5.82418 5.92089 6.21361 6.27594 6.51541 6.65554 7.05922 7.22692 7.26899 8.74512 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002873 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.305862 B = 9742.115688 C =10598.275418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.292 4.292 13 C 0.282 3.718 14 N -0.637 5.637 15 C 0.714 3.286 16 O -0.594 6.594 17 N -0.611 5.611 18 C 0.092 3.908 19 C 0.053 3.947 20 O -0.379 6.379 21 C 0.077 3.923 22 H 0.081 0.919 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.130 4.130 26 C 0.097 3.903 27 H 0.097 0.903 28 N -0.346 5.346 29 H 0.273 0.727 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.166 0.834 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.378 -16.822 -7.369 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.324 4.324 13 C 0.027 3.973 14 N -0.291 5.291 15 C 0.415 3.585 16 O -0.472 6.472 17 N -0.348 5.348 18 C -0.030 4.030 19 C -0.024 4.024 20 O -0.297 6.297 21 C 0.018 3.982 22 H 0.099 0.901 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.168 4.168 26 C -0.007 4.007 27 H 0.115 0.885 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.183 0.817 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.912 -16.156 -7.572 25.282 hybrid contribution -0.143 0.688 0.465 0.843 sum 17.769 -15.468 -7.107 24.607 Atomic orbital electron populations 1.69994 1.07219 1.28780 1.49949 1.25739 0.95841 1.02718 0.93873 0.85346 0.78358 0.78120 0.78588 1.19715 1.19689 1.19756 1.21404 0.93381 0.90986 1.52838 0.92965 1.19344 0.85645 0.81464 0.98144 1.48831 1.23729 1.20353 1.19640 1.23156 1.00352 0.88841 0.96672 1.21656 1.02174 1.06713 1.01824 1.19085 0.90836 0.93106 0.94294 1.41586 1.30517 1.25436 1.31524 1.15714 0.80013 0.79650 0.83102 1.90824 1.66052 1.65959 1.24343 1.47032 1.36784 1.22853 1.28131 1.22433 0.94968 0.82956 1.02651 1.23065 0.92040 1.01993 0.85276 1.87809 1.73468 1.32564 1.35906 1.23585 0.90869 0.85664 0.98036 0.90124 1.22710 1.00112 1.01904 0.90281 1.22230 0.93659 1.01167 0.97896 1.22359 0.99411 1.00885 0.94189 1.22606 0.95876 0.97366 0.84898 0.88537 1.77236 1.04940 1.17735 1.17787 0.91821 0.96029 0.92294 0.78093 0.81676 0.74523 0.88481 0.89537 0.93031 0.84854 0.88444 0.89491 0.91155 0.90204 0.91445 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -31.04 9.23 25.60 0.24 -30.80 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.23 6.26 85.64 0.54 14.77 16 10 N -0.34 -16.33 3.67 -351.84 -1.29 -17.62 16 11 C 0.06 2.34 11.44 83.52 0.96 3.30 16 12 C -0.29 -11.78 9.61 22.11 0.21 -11.57 16 13 C 0.28 11.63 8.11 133.31 1.08 12.71 16 14 N -0.64 -20.65 5.34 -321.23 -1.72 -22.37 16 15 C 0.71 21.79 8.24 179.05 1.48 23.27 16 16 O -0.59 -21.63 12.90 -4.01 -0.05 -21.68 16 17 N -0.61 -13.46 2.72 -810.07 -2.20 -15.66 16 18 C 0.09 1.63 6.37 86.44 0.55 2.19 16 19 C 0.05 0.75 7.01 72.15 0.51 1.26 16 20 O -0.38 -6.06 10.00 -148.98 -1.49 -7.55 16 21 C 0.08 1.14 3.99 31.99 0.13 1.26 16 22 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 23 C -0.11 -1.21 6.47 32.21 0.21 -1.00 16 24 C -0.11 -1.26 6.76 31.77 0.21 -1.05 16 25 C -0.13 -1.95 6.40 31.17 0.20 -1.75 16 26 C 0.10 1.66 2.94 45.94 0.14 1.80 16 27 H 0.10 1.63 5.79 -2.39 -0.01 1.61 16 28 N -0.35 -16.33 12.42 -54.44 -0.68 -17.01 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 32 H 0.20 6.36 8.06 -2.91 -0.02 6.33 16 33 H 0.17 6.50 5.93 -2.91 -0.02 6.48 16 34 H 0.42 11.31 6.35 -92.71 -0.59 10.72 16 35 H 0.10 1.96 7.01 -2.39 -0.02 1.94 16 36 H 0.09 1.35 7.48 -2.38 -0.02 1.33 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.07 1.12 7.15 -2.39 -0.02 1.10 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.35 354.73 2.22 -68.13 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.44 Total: 24.24 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.90 Total: 15.87 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.60 Total: -124.60 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.54 Total: -29.24 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.35 2.22 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266415947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.072 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds