Wall clock time and date at job start Tue Mar 31 2020 12:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46969 * 300.00023 * 3 2 1 6 6 H 1.48506 * 109.47257 * 59.99887 * 3 2 1 7 7 C 1.37873 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99979 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47494 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97902 * 125.00018 * 10 9 7 12 12 C 1.35242 * 107.85628 * 180.26424 * 11 10 9 13 13 C 1.40398 * 107.86869 * 359.61679 * 12 11 10 14 14 N 1.40202 * 125.97211 * 180.14830 * 13 12 11 15 15 C 1.34779 * 119.99955 * 0.25471 * 14 13 12 16 16 O 1.21596 * 119.99625 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00235 * 179.97438 * 15 14 13 18 18 C 1.45732 * 117.56351 * 0.02562 * 17 15 14 19 19 C 1.53257 * 109.32280 * 156.06824 * 18 17 15 20 20 O 1.43189 * 107.38100 * 51.81290 * 19 18 17 21 21 C 1.42335 * 113.94636 * 289.70913 * 20 19 18 22 22 H 1.08990 * 109.51613 * 291.34248 * 21 20 19 23 23 C 1.53852 * 109.08675 * 171.50324 * 21 20 19 24 24 C 1.53730 * 106.95428 * 235.14800 * 23 21 20 25 25 C 1.54064 * 105.85050 * 19.15432 * 24 23 21 26 26 C 1.44291 * 117.56921 * 179.73609 * 17 15 14 27 27 H 1.09005 * 108.09054 * 308.32240 * 26 17 15 28 28 N 1.31204 * 108.05708 * 0.38830 * 13 12 11 29 29 H 0.96995 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46992 * 59.99966 * 9 7 2 31 31 H 1.09001 * 109.46891 * 300.00360 * 9 7 2 32 32 H 1.08002 * 126.06683 * 359.97438 * 11 10 9 33 33 H 1.08005 * 126.06495 * 179.71879 * 12 11 10 34 34 H 0.96997 * 119.99962 * 180.24858 * 14 13 12 35 35 H 1.09001 * 109.49138 * 276.01921 * 18 17 15 36 36 H 1.09001 * 109.50138 * 36.07691 * 18 17 15 37 37 H 1.08994 * 109.87450 * 171.28436 * 19 18 17 38 38 H 1.09007 * 109.86958 * 292.34702 * 19 18 17 39 39 H 1.09007 * 109.96107 * 354.52468 * 23 21 20 40 40 H 1.09004 * 109.96098 * 115.73645 * 23 21 20 41 41 H 1.08998 * 110.17691 * 138.24868 * 24 23 21 42 42 H 1.08996 * 110.17589 * 259.98508 * 24 23 21 43 43 H 1.09000 * 110.33810 * 90.71800 * 25 24 23 44 44 H 1.09005 * 110.33885 * 212.86116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8941 12 6 3.2646 -5.4394 0.5529 13 6 3.8694 -4.9141 -0.6001 14 7 4.9660 -5.4647 -1.2784 15 6 5.5310 -6.6043 -0.8329 16 8 5.0901 -7.1546 0.1577 17 7 6.5848 -7.1338 -1.4852 18 6 7.0702 -6.4302 -2.6655 19 6 8.5405 -6.7920 -2.9027 20 8 8.6342 -8.2208 -2.9064 21 6 8.4373 -8.8159 -1.6285 22 1 9.2763 -8.5683 -0.9784 23 6 8.3482 -10.3430 -1.7931 24 6 7.0210 -10.7859 -1.1559 25 6 6.1493 -9.5181 -1.0752 26 6 7.1525 -8.3517 -0.9594 27 1 7.3568 -8.1999 0.1005 28 7 3.2324 -3.8153 -0.9288 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6248 -2.5570 0.8897 32 1 1.5782 -4.7521 1.7360 33 1 3.5618 -6.3376 1.0740 34 1 5.3178 -5.0254 -2.0684 35 1 6.4789 -6.7238 -3.5328 36 1 6.9801 -5.3550 -2.5109 37 1 8.8690 -6.3966 -3.8638 38 1 9.1566 -6.3823 -2.1022 39 1 8.3586 -10.6045 -2.8513 40 1 9.1844 -10.8217 -1.2834 41 1 6.5362 -11.5363 -1.7803 42 1 7.1983 -11.1857 -0.1576 43 1 5.5472 -9.4142 -1.9778 44 1 5.5078 -9.5549 -0.1947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266415950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:31 Heat of formation + Delta-G solvation = 23.196012 kcal Electronic energy + Delta-G solvation = -27053.158557 eV Core-core repulsion = 23200.966959 eV Total energy + Delta-G solvation = -3852.191598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36072 -40.33369 -38.92828 -36.46761 -35.18966 -34.70900 -33.29419 -30.92098 -30.20185 -29.30843 -28.57768 -27.59712 -26.44153 -23.64047 -23.24619 -22.02000 -21.07372 -20.51395 -19.85034 -19.01110 -18.19928 -17.50350 -16.59346 -16.53580 -16.42546 -15.94205 -15.42307 -15.13237 -14.85438 -14.65145 -14.44381 -14.28527 -13.94546 -13.57140 -13.24894 -12.82329 -12.59205 -12.39839 -12.27763 -12.08420 -11.86125 -11.73578 -11.58222 -11.46152 -11.06201 -10.94255 -10.88191 -10.77563 -10.41083 -10.27820 -10.20982 -9.96210 -9.60433 -9.47444 -8.85635 -8.63625 -8.09925 -7.41302 -6.24374 -4.29279 2.22247 2.63996 3.07863 3.21819 3.26625 3.29348 3.35253 3.39774 3.81692 4.00757 4.18133 4.26179 4.33287 4.37576 4.56014 4.72085 4.82815 4.88871 5.10798 5.12897 5.16096 5.19399 5.25433 5.34043 5.39405 5.51395 5.61209 5.67077 5.74974 5.81045 6.02699 6.05159 6.18784 6.36367 6.54445 6.57955 6.75332 6.86500 6.94976 7.08322 7.47955 7.68992 7.77890 7.93156 8.06989 8.53525 8.66201 8.81202 9.36341 10.84391 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002627 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.335345 B =10657.395020 C =11494.205052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.274 3.726 14 N -0.642 5.642 15 C 0.711 3.289 16 O -0.559 6.559 17 N -0.612 5.612 18 C 0.071 3.929 19 C 0.053 3.947 20 O -0.370 6.370 21 C 0.090 3.910 22 H 0.066 0.934 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.137 3.863 27 H 0.082 0.918 28 N -0.307 5.307 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.827 -18.739 -4.355 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.020 3.980 14 N -0.294 5.294 15 C 0.411 3.589 16 O -0.434 6.434 17 N -0.351 5.351 18 C -0.053 4.053 19 C -0.024 4.024 20 O -0.288 6.288 21 C 0.031 3.969 22 H 0.084 0.916 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.168 4.168 26 C 0.032 3.968 27 H 0.100 0.900 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.243 0.757 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.265 -18.078 -4.631 24.755 hybrid contribution 0.464 0.896 0.315 1.057 sum 16.729 -17.182 -4.316 24.366 Atomic orbital electron populations 1.69925 1.06036 1.27505 1.49908 1.24948 0.94984 0.99553 0.94655 0.86279 0.80043 0.82497 0.77713 1.19588 1.20700 1.20769 1.21297 0.94019 0.89380 1.51829 0.91273 1.19741 0.85625 0.81311 0.99248 1.49056 1.23217 1.19705 1.18238 1.22553 1.00264 0.90302 0.96769 1.21504 1.01926 1.06599 1.01661 1.18798 0.90725 0.94146 0.94330 1.41583 1.31363 1.25050 1.31403 1.15607 0.80158 0.80213 0.82892 1.90851 1.63901 1.62188 1.26458 1.46080 1.33202 1.26174 1.29608 1.22114 0.97253 0.97176 0.88713 1.22942 0.94077 0.81838 1.03540 1.87974 1.92074 1.19311 1.29489 1.22455 0.94980 0.94399 0.85026 0.91561 1.22110 0.98462 0.91852 1.02821 1.22043 0.94968 0.97829 1.01112 1.22632 0.97978 0.92751 1.03472 1.21077 0.93649 0.83734 0.98302 0.89968 1.77315 1.03899 1.16224 1.16417 0.92387 0.93753 0.92539 0.81526 0.82202 0.75746 0.90605 0.89690 0.86977 0.91943 0.89954 0.90440 0.91021 0.91210 0.91416 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 10 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.76 9.61 -39.84 -0.38 -6.14 16 13 C 0.27 5.60 8.11 -154.36 -1.25 4.35 16 14 N -0.64 -10.38 5.27 -15.50 -0.08 -10.46 16 15 C 0.71 10.93 7.87 -86.92 -0.68 10.25 16 16 O -0.56 -10.05 12.04 5.28 0.06 -9.98 16 17 N -0.61 -7.15 2.96 -173.60 -0.51 -7.66 16 18 C 0.07 0.62 5.89 -4.32 -0.03 0.59 16 19 C 0.05 0.38 7.01 37.29 0.26 0.64 16 20 O -0.37 -3.39 10.22 -35.23 -0.36 -3.75 16 21 C 0.09 0.76 3.49 -26.73 -0.09 0.67 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 C -0.11 -0.80 6.59 -25.91 -0.17 -0.98 16 24 C -0.12 -0.91 6.81 -25.80 -0.18 -1.08 16 25 C -0.13 -1.35 5.69 -25.51 -0.15 -1.50 16 26 C 0.14 1.45 2.70 -68.89 -0.19 1.26 16 27 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 28 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.16 3.16 5.91 -52.48 -0.31 2.85 16 34 H 0.41 5.45 6.46 -40.82 -0.26 5.18 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.66 6.47 -51.93 -0.34 0.32 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.08 0.61 7.92 -51.93 -0.41 0.19 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.08 1.02 7.48 -51.93 -0.39 0.63 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -32.95 354.49 -9.48 -42.43 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.31 Total: 4.82 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.50 Total: 2.05 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.30 Total: -57.23 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.30 Total: -13.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.95 -9.48 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266415950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.627 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds