Wall clock time and date at job start Tue Mar 31 2020 12:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46969 * 300.00023 * 3 2 1 6 6 H 1.48506 * 109.47257 * 59.99887 * 3 2 1 7 7 C 1.37873 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99979 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47494 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97902 * 125.00018 * 10 9 7 12 12 C 1.35242 * 107.85628 * 180.26424 * 11 10 9 13 13 C 1.40398 * 107.86869 * 359.61679 * 12 11 10 14 14 N 1.40202 * 125.97211 * 180.14830 * 13 12 11 15 15 C 1.34779 * 119.99955 * 0.25471 * 14 13 12 16 16 O 1.21596 * 119.99625 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00235 * 179.97438 * 15 14 13 18 18 C 1.45732 * 117.56351 * 0.02562 * 17 15 14 19 19 C 1.53257 * 109.32280 * 156.06824 * 18 17 15 20 20 O 1.43189 * 107.38100 * 51.81290 * 19 18 17 21 21 C 1.42335 * 113.94636 * 289.70913 * 20 19 18 22 22 H 1.08990 * 109.51613 * 291.34248 * 21 20 19 23 23 C 1.53852 * 109.08675 * 171.50324 * 21 20 19 24 24 C 1.53730 * 106.95428 * 235.14800 * 23 21 20 25 25 C 1.54064 * 105.85050 * 19.15432 * 24 23 21 26 26 C 1.44291 * 117.56921 * 179.73609 * 17 15 14 27 27 H 1.09005 * 108.09054 * 308.32240 * 26 17 15 28 28 N 1.31204 * 108.05708 * 0.38830 * 13 12 11 29 29 H 0.96995 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46992 * 59.99966 * 9 7 2 31 31 H 1.09001 * 109.46891 * 300.00360 * 9 7 2 32 32 H 1.08002 * 126.06683 * 359.97438 * 11 10 9 33 33 H 1.08005 * 126.06495 * 179.71879 * 12 11 10 34 34 H 0.96997 * 119.99962 * 180.24858 * 14 13 12 35 35 H 1.09001 * 109.49138 * 276.01921 * 18 17 15 36 36 H 1.09001 * 109.50138 * 36.07691 * 18 17 15 37 37 H 1.08994 * 109.87450 * 171.28436 * 19 18 17 38 38 H 1.09007 * 109.86958 * 292.34702 * 19 18 17 39 39 H 1.09007 * 109.96107 * 354.52468 * 23 21 20 40 40 H 1.09004 * 109.96098 * 115.73645 * 23 21 20 41 41 H 1.08998 * 110.17691 * 138.24868 * 24 23 21 42 42 H 1.08996 * 110.17589 * 259.98508 * 24 23 21 43 43 H 1.09000 * 110.33810 * 90.71800 * 25 24 23 44 44 H 1.09005 * 110.33885 * 212.86116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8941 12 6 3.2646 -5.4394 0.5529 13 6 3.8694 -4.9141 -0.6001 14 7 4.9660 -5.4647 -1.2784 15 6 5.5310 -6.6043 -0.8329 16 8 5.0901 -7.1546 0.1577 17 7 6.5848 -7.1338 -1.4852 18 6 7.0702 -6.4302 -2.6655 19 6 8.5405 -6.7920 -2.9027 20 8 8.6342 -8.2208 -2.9064 21 6 8.4373 -8.8159 -1.6285 22 1 9.2763 -8.5683 -0.9784 23 6 8.3482 -10.3430 -1.7931 24 6 7.0210 -10.7859 -1.1559 25 6 6.1493 -9.5181 -1.0752 26 6 7.1525 -8.3517 -0.9594 27 1 7.3568 -8.1999 0.1005 28 7 3.2324 -3.8153 -0.9288 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6248 -2.5570 0.8897 32 1 1.5782 -4.7521 1.7360 33 1 3.5618 -6.3376 1.0740 34 1 5.3178 -5.0254 -2.0684 35 1 6.4789 -6.7238 -3.5328 36 1 6.9801 -5.3550 -2.5109 37 1 8.8690 -6.3966 -3.8638 38 1 9.1566 -6.3823 -2.1022 39 1 8.3586 -10.6045 -2.8513 40 1 9.1844 -10.8217 -1.2834 41 1 6.5362 -11.5363 -1.7803 42 1 7.1983 -11.1857 -0.1576 43 1 5.5472 -9.4142 -1.9778 44 1 5.5078 -9.5549 -0.1947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266415950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:31 Heat of formation + Delta-G solvation = 2.413595 kcal Electronic energy + Delta-G solvation = -27054.059750 eV Core-core repulsion = 23200.966959 eV Total energy + Delta-G solvation = -3853.092792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51600 -41.73751 -39.98842 -37.20562 -36.20107 -36.17720 -35.18794 -32.71989 -31.00406 -30.86595 -29.38143 -28.78328 -27.97315 -25.06569 -24.36109 -23.34923 -22.20807 -21.64215 -21.13520 -20.07469 -19.30307 -18.70172 -18.36564 -17.95513 -17.38833 -17.05913 -16.64632 -16.39864 -16.09178 -15.80902 -15.49660 -15.36932 -15.28649 -14.63739 -14.52141 -14.25384 -14.05746 -13.78383 -13.66921 -13.28022 -12.97664 -12.89231 -12.73204 -12.49014 -12.31278 -12.23423 -12.18299 -12.02524 -11.66926 -11.60659 -11.45950 -11.39261 -11.18986 -10.72652 -10.64748 -9.88839 -9.70705 -9.07249 -8.33211 -6.47316 0.99252 1.07145 1.37200 1.38430 1.51462 1.63862 1.94083 2.33229 2.34630 2.69700 2.76352 2.98486 3.41246 3.56102 3.68640 3.86095 3.96405 4.09049 4.18741 4.25607 4.26609 4.38587 4.45415 4.51150 4.64140 4.70156 4.72304 4.78865 4.87622 4.92908 4.96381 5.01152 5.03679 5.09545 5.17203 5.23493 5.36905 5.53853 5.56327 5.61657 5.81947 5.92844 6.14529 6.27920 6.52536 6.65939 7.07000 7.22714 7.30160 8.74624 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002627 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.335345 B =10657.395020 C =11494.205052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.292 4.292 13 C 0.283 3.717 14 N -0.636 5.636 15 C 0.706 3.294 16 O -0.588 6.588 17 N -0.602 5.602 18 C 0.061 3.939 19 C 0.055 3.945 20 O -0.381 6.381 21 C 0.091 3.909 22 H 0.081 0.919 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.129 4.129 26 C 0.131 3.869 27 H 0.071 0.929 28 N -0.346 5.346 29 H 0.273 0.727 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.166 0.834 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.904 -19.166 -4.685 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.091 4.091 12 C -0.323 4.323 13 C 0.027 3.973 14 N -0.290 5.290 15 C 0.407 3.593 16 O -0.465 6.465 17 N -0.339 5.339 18 C -0.061 4.061 19 C -0.022 4.022 20 O -0.299 6.299 21 C 0.033 3.967 22 H 0.099 0.901 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.168 4.168 26 C 0.026 3.974 27 H 0.089 0.911 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.184 0.816 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.382 -18.534 -4.994 26.577 hybrid contribution -0.145 0.920 0.405 1.016 sum 18.238 -17.614 -4.590 25.766 Atomic orbital electron populations 1.70000 1.07219 1.28714 1.50045 1.25747 0.95850 1.02752 0.93910 0.85287 0.78399 0.78336 0.78302 1.19878 1.19814 1.19539 1.21421 0.93362 0.90939 1.52683 0.92968 1.19349 0.85664 0.81500 0.98122 1.48832 1.23825 1.20311 1.19654 1.23152 1.00358 0.88877 0.96710 1.21672 1.02051 1.06792 1.01798 1.19084 0.90882 0.93146 0.94182 1.41582 1.30403 1.25358 1.31612 1.15808 0.80811 0.79807 0.82854 1.90819 1.65011 1.62830 1.27880 1.46166 1.31735 1.26263 1.29760 1.22410 0.98682 0.97517 0.87498 1.23114 0.92673 0.81058 1.05316 1.87970 1.91923 1.20308 1.29737 1.22543 0.93880 0.95233 0.85043 0.90085 1.22130 0.98747 0.90853 1.02990 1.22021 0.94753 0.96384 1.02121 1.22561 0.98060 0.94638 1.01509 1.21283 0.94792 0.83156 0.98159 0.91070 1.77236 1.04978 1.17930 1.17574 0.91836 0.96061 0.92325 0.78158 0.81636 0.74300 0.90102 0.88708 0.84324 0.91231 0.90046 0.88173 0.90255 0.90091 0.93026 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 13.29 21.45 0.28 -52.01 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.94 9.24 25.60 0.24 -30.70 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.25 6.26 85.63 0.54 14.79 16 10 N -0.34 -16.42 3.67 -351.83 -1.29 -17.71 16 11 C 0.06 2.32 11.44 83.52 0.96 3.27 16 12 C -0.29 -11.79 9.61 22.10 0.21 -11.58 16 13 C 0.28 11.64 8.11 133.31 1.08 12.72 16 14 N -0.64 -20.49 5.27 -321.22 -1.69 -22.19 16 15 C 0.71 21.68 7.87 179.05 1.41 23.09 16 16 O -0.59 -21.40 12.04 -4.02 -0.05 -21.45 16 17 N -0.60 -13.64 2.96 -821.41 -2.43 -16.07 16 18 C 0.06 0.97 5.89 86.61 0.51 1.48 16 19 C 0.06 0.65 7.01 72.07 0.51 1.16 16 20 O -0.38 -6.02 10.22 -148.98 -1.52 -7.55 16 21 C 0.09 1.36 3.49 30.59 0.11 1.46 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 C -0.11 -1.26 6.59 31.13 0.21 -1.06 16 24 C -0.11 -1.54 6.81 31.20 0.21 -1.33 16 25 C -0.13 -2.67 5.69 31.39 0.18 -2.49 16 26 C 0.13 2.66 2.70 45.55 0.12 2.78 16 27 H 0.07 1.61 7.90 -2.38 -0.02 1.59 16 28 N -0.35 -16.36 12.42 -54.44 -0.68 -17.04 16 29 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 32 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 33 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 34 H 0.42 11.04 6.46 -92.71 -0.60 10.44 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.32 6.47 -2.39 -0.02 1.30 16 37 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 39 H 0.08 0.99 7.92 -2.38 -0.02 0.97 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 44 H 0.06 1.55 7.48 -2.38 -0.02 1.54 16 Total: -1.00 -71.60 354.49 1.81 -69.79 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.42 Total: 23.56 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.73 Total: 15.02 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.80 Total: -125.01 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.57 Total: -28.99 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.60 1.81 -69.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266415950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.202 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds