Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39937 * 125.98116 * 179.71599 * 13 12 11 15 15 C 1.34770 * 119.99823 * 359.97438 * 14 13 12 16 16 O 1.21382 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.49348 * 120.00144 * 179.97438 * 15 14 13 18 18 O 1.21360 * 119.99379 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00144 * 179.97438 * 17 15 14 20 20 C 1.46500 * 120.00256 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47373 * 180.02562 * 20 19 17 22 22 C 1.54265 * 110.02932 * 292.90727 * 21 20 19 23 23 C 1.54968 * 104.16009 * 217.13887 * 22 21 20 24 24 C 1.54894 * 102.77618 * 37.88439 * 23 22 21 25 25 C 1.53873 * 110.03194 * 175.69170 * 21 20 19 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.06078 * 0.02562 * 11 10 9 31 31 H 1.07994 * 126.06669 * 180.15979 * 12 11 10 32 32 H 0.96999 * 119.99736 * 180.02562 * 14 13 12 33 33 H 0.97008 * 119.99824 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.46944 * 300.00380 * 20 19 17 35 35 H 1.08996 * 109.47208 * 59.99475 * 20 19 17 36 36 H 1.08994 * 110.01700 * 54.29488 * 21 20 19 37 37 H 1.09000 * 110.48469 * 335.78170 * 22 21 20 38 38 H 1.08990 * 110.49005 * 98.42763 * 22 21 20 39 39 H 1.08998 * 110.71642 * 279.57465 * 23 22 21 40 40 H 1.08994 * 110.92682 * 156.29643 * 23 22 21 41 41 H 1.09001 * 110.48822 * 203.40733 * 24 23 22 42 42 H 1.09001 * 110.59722 * 80.82175 * 24 23 22 43 43 H 1.09001 * 110.03082 * 238.57178 * 25 21 20 44 44 H 1.09006 * 110.03218 * 359.94468 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9589 -5.4618 -1.3027 15 6 5.5254 -6.6023 -0.8616 16 8 5.0881 -7.1543 0.1271 17 6 6.6905 -7.1877 -1.5898 18 8 7.1274 -6.6360 -2.5785 19 7 7.2574 -8.3279 -1.1484 20 6 8.4006 -8.9019 -1.8624 21 6 8.8488 -10.1850 -1.1599 22 6 9.4286 -9.8514 0.2302 23 6 10.6061 -10.8448 0.3982 24 6 11.2078 -10.9071 -1.0277 25 6 9.9793 -10.8563 -1.9593 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5906 -4.7507 1.7301 31 1 3.5573 -6.3466 1.0454 32 1 5.3086 -5.0204 -2.0925 33 1 6.9083 -8.7686 -0.3578 34 1 8.1105 -9.1317 -2.8877 35 1 9.2217 -8.1851 -1.8693 36 1 8.0061 -10.8688 -1.0586 37 1 9.7904 -8.8235 0.2559 38 1 8.6791 -10.0125 1.0049 39 1 10.2426 -11.8248 0.7072 40 1 11.3382 -10.4639 1.1101 41 1 11.7562 -11.8383 -1.1700 42 1 11.8583 -10.0511 -1.2072 43 1 9.6855 -11.8662 -2.2454 44 1 10.2079 -10.2684 -2.8483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267922833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = -4.723547 kcal Electronic energy + Delta-G solvation = -25605.394833 eV Core-core repulsion = 21751.992552 eV Total energy + Delta-G solvation = -3853.402281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16163 -40.33468 -39.08261 -38.27456 -35.52415 -34.60673 -33.67608 -31.00097 -30.50979 -29.50041 -29.15682 -26.93519 -25.83665 -24.08118 -22.86015 -21.46782 -21.08595 -20.72144 -20.23586 -19.62409 -18.36234 -17.23562 -17.15372 -16.51690 -16.38908 -16.16684 -15.62955 -15.24005 -15.07780 -14.67076 -14.31779 -14.02671 -13.81321 -13.78322 -13.60527 -13.29921 -12.77013 -12.53940 -12.33755 -12.04465 -11.83276 -11.60598 -11.53870 -11.45814 -11.34592 -11.18928 -11.09886 -10.95425 -10.85073 -10.59149 -10.18210 -10.10544 -9.63200 -9.56427 -9.04744 -8.60025 -8.32389 -7.65312 -6.60573 -4.34853 1.15257 2.00179 2.57050 2.96285 3.11293 3.36180 3.40788 3.57359 3.58594 3.75977 4.05245 4.10194 4.18614 4.33517 4.39804 4.71894 4.86136 4.94426 4.97796 5.12062 5.13011 5.20697 5.31273 5.32042 5.36002 5.45798 5.49100 5.60789 5.63701 5.72482 5.83234 5.86026 5.94681 6.00457 6.23052 6.31401 6.49988 6.69346 6.84162 7.15626 7.26875 7.54873 7.65672 7.75087 7.88826 8.31306 8.43443 8.58432 9.33298 10.77254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.001988 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.375089 B =14080.511714 C =14409.139226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.252 3.748 14 N -0.598 5.598 15 C 0.513 3.487 16 O -0.500 6.500 17 C 0.515 3.485 18 O -0.515 6.515 19 N -0.699 5.699 20 C 0.124 3.876 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.117 4.117 26 N -0.292 5.292 27 H 0.267 0.733 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.424 0.576 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -23.360 -0.431 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.095 5.095 11 C -0.097 4.097 12 C -0.315 4.315 13 C -0.001 4.001 14 N -0.247 5.247 15 C 0.293 3.707 16 O -0.373 6.373 17 C 0.295 3.705 18 O -0.390 6.390 19 N -0.353 5.353 20 C 0.001 3.999 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.155 4.155 26 N -0.123 5.123 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.261 0.739 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.134 -20.655 -1.286 27.516 hybrid contribution 0.146 -2.277 0.550 2.347 sum 18.280 -22.932 -0.736 29.336 Atomic orbital electron populations 1.70827 1.06778 1.30457 1.45916 1.25931 0.96306 1.02836 0.93072 0.83383 0.74734 0.74288 0.76972 1.21193 1.21188 1.20686 1.22128 0.95447 0.90366 1.56783 0.91734 1.19818 0.86273 0.82781 0.98156 1.48870 1.23127 1.19482 1.17984 1.22581 1.00391 0.90018 0.96708 1.21523 1.02234 1.06322 1.01372 1.19020 0.91520 0.94623 0.94894 1.42004 1.28880 1.23696 1.30106 1.19950 0.84307 0.81349 0.85136 1.90704 1.61988 1.59829 1.24808 1.19863 0.83921 0.81904 0.84788 1.90798 1.62770 1.60217 1.25257 1.45715 1.32971 1.24730 1.31893 1.21694 0.87789 0.94489 0.95931 1.22064 0.98974 0.95811 0.95668 1.22529 0.97881 0.99941 0.95921 1.22504 0.97419 0.99460 0.96901 1.22370 0.97263 1.01885 0.94831 1.22120 0.94255 1.00754 0.98388 1.77435 1.03224 1.15801 1.15816 0.92247 0.93459 0.94578 0.81238 0.82005 0.73884 0.74954 0.90779 0.90632 0.89977 0.91063 0.91236 0.91449 0.91472 0.91619 0.91484 0.91298 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.65 55.43 0.76 -25.45 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.99 29.90 -169.99 -5.08 19.91 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.61 -17.06 9.24 -34.44 -0.32 -17.38 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.20 5.57 -5.19 -0.03 6.17 16 10 N -0.31 -7.21 3.67 -62.56 -0.23 -7.44 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.39 9.60 -39.82 -0.38 -5.78 16 13 C 0.25 5.06 8.10 -154.55 -1.25 3.81 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.89 16 15 C 0.51 7.45 7.85 -11.64 -0.09 7.36 16 16 O -0.50 -7.77 13.60 5.47 0.07 -7.70 16 17 C 0.52 6.35 7.89 -11.64 -0.09 6.26 16 18 O -0.52 -7.42 16.48 5.49 0.09 -7.33 16 19 N -0.70 -6.26 5.39 -60.77 -0.33 -6.59 16 20 C 0.12 0.89 4.73 -4.04 -0.02 0.87 16 21 C -0.11 -0.56 2.97 -89.50 -0.27 -0.82 16 22 C -0.13 -0.68 6.05 -25.03 -0.15 -0.83 16 23 C -0.13 -0.61 6.91 -24.69 -0.17 -0.78 16 24 C -0.13 -0.58 6.83 -25.07 -0.17 -0.75 16 25 C -0.12 -0.55 6.46 -25.62 -0.17 -0.71 16 26 N -0.29 -6.77 12.42 31.41 0.39 -6.38 16 27 H 0.27 7.55 7.22 -40.82 -0.29 7.26 16 28 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 29 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 30 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.16 2.87 5.91 -52.49 -0.31 2.56 16 32 H 0.42 6.41 8.29 -40.82 -0.34 6.07 16 33 H 0.41 3.22 7.80 -40.82 -0.32 2.90 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 7.77 -51.93 -0.40 0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.32 7.67 -51.93 -0.40 -0.08 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -32.71 370.59 -8.53 -41.24 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.32 Total: 5.24 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.40 Total: -1.21 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.53 Total: -55.74 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.16 Total: -15.03 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.71 -8.53 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267922833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.516 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds