Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39937 * 125.98116 * 179.71599 * 13 12 11 15 15 C 1.34770 * 119.99823 * 359.97438 * 14 13 12 16 16 O 1.21382 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.49348 * 120.00144 * 179.97438 * 15 14 13 18 18 O 1.21360 * 119.99379 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00144 * 179.97438 * 17 15 14 20 20 C 1.46500 * 120.00256 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47373 * 180.02562 * 20 19 17 22 22 C 1.54265 * 110.02932 * 292.90727 * 21 20 19 23 23 C 1.54968 * 104.16009 * 217.13887 * 22 21 20 24 24 C 1.54894 * 102.77618 * 37.88439 * 23 22 21 25 25 C 1.53873 * 110.03194 * 175.69170 * 21 20 19 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.06078 * 0.02562 * 11 10 9 31 31 H 1.07994 * 126.06669 * 180.15979 * 12 11 10 32 32 H 0.96999 * 119.99736 * 180.02562 * 14 13 12 33 33 H 0.97008 * 119.99824 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.46944 * 300.00380 * 20 19 17 35 35 H 1.08996 * 109.47208 * 59.99475 * 20 19 17 36 36 H 1.08994 * 110.01700 * 54.29488 * 21 20 19 37 37 H 1.09000 * 110.48469 * 335.78170 * 22 21 20 38 38 H 1.08990 * 110.49005 * 98.42763 * 22 21 20 39 39 H 1.08998 * 110.71642 * 279.57465 * 23 22 21 40 40 H 1.08994 * 110.92682 * 156.29643 * 23 22 21 41 41 H 1.09001 * 110.48822 * 203.40733 * 24 23 22 42 42 H 1.09001 * 110.59722 * 80.82175 * 24 23 22 43 43 H 1.09001 * 110.03082 * 238.57178 * 25 21 20 44 44 H 1.09006 * 110.03218 * 359.94468 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9589 -5.4618 -1.3027 15 6 5.5254 -6.6023 -0.8616 16 8 5.0881 -7.1543 0.1271 17 6 6.6905 -7.1877 -1.5898 18 8 7.1274 -6.6360 -2.5785 19 7 7.2574 -8.3279 -1.1484 20 6 8.4006 -8.9019 -1.8624 21 6 8.8488 -10.1850 -1.1599 22 6 9.4286 -9.8514 0.2302 23 6 10.6061 -10.8448 0.3982 24 6 11.2078 -10.9071 -1.0277 25 6 9.9793 -10.8563 -1.9593 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5906 -4.7507 1.7301 31 1 3.5573 -6.3466 1.0454 32 1 5.3086 -5.0204 -2.0925 33 1 6.9083 -8.7686 -0.3578 34 1 8.1105 -9.1317 -2.8877 35 1 9.2217 -8.1851 -1.8693 36 1 8.0061 -10.8688 -1.0586 37 1 9.7904 -8.8235 0.2559 38 1 8.6791 -10.0125 1.0049 39 1 10.2426 -11.8248 0.7072 40 1 11.3382 -10.4639 1.1101 41 1 11.7562 -11.8383 -1.1700 42 1 11.8583 -10.0511 -1.2072 43 1 9.6855 -11.8662 -2.2454 44 1 10.2079 -10.2684 -2.8483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267922833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = -26.081465 kcal Electronic energy + Delta-G solvation = -25606.320982 eV Core-core repulsion = 21751.992552 eV Total energy + Delta-G solvation = -3854.328430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53021 -41.60265 -39.96957 -39.07980 -36.77482 -35.90127 -35.33574 -32.76993 -31.12839 -31.09491 -29.54818 -28.53843 -27.02206 -25.33485 -24.44892 -22.71995 -22.05619 -21.49231 -21.27400 -20.59856 -19.45379 -19.22652 -18.36866 -17.77524 -17.36129 -17.08325 -16.74853 -16.31059 -16.11926 -15.79141 -15.63559 -15.48439 -15.12920 -14.92891 -14.49915 -14.18617 -14.13230 -13.97423 -13.79969 -13.35128 -13.26880 -12.82049 -12.61228 -12.20128 -12.15403 -11.99111 -11.98243 -11.89498 -11.81478 -11.68279 -11.50545 -11.33769 -11.03880 -10.83119 -10.69472 -10.37009 -9.92927 -9.31427 -8.79340 -6.56737 0.00195 0.80381 1.04453 1.50118 1.57744 1.67919 1.73499 1.79502 2.20070 2.46160 2.54031 3.00357 3.20807 3.60004 3.68233 3.78053 3.79825 4.09066 4.31020 4.36073 4.48854 4.50115 4.59328 4.60752 4.68747 4.73333 4.75909 4.79111 4.83782 4.89606 4.90818 5.04002 5.10358 5.11028 5.28184 5.35000 5.47644 5.51314 5.52275 5.68327 5.76399 5.89300 6.11393 6.24568 6.39996 6.51584 6.75406 6.85790 7.18299 8.57913 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.001988 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.375089 B =14080.511714 C =14409.139226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.060 3.940 12 C -0.285 4.285 13 C 0.260 3.740 14 N -0.602 5.602 15 C 0.517 3.483 16 O -0.506 6.506 17 C 0.523 3.477 18 O -0.538 6.538 19 N -0.679 5.679 20 C 0.123 3.877 21 C -0.099 4.099 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.117 4.117 26 N -0.342 5.342 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.208 0.792 31 H 0.179 0.821 32 H 0.428 0.572 33 H 0.422 0.578 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.707 -24.855 0.303 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.942 3.058 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.660 4.660 8 H 0.062 0.938 9 C 0.138 3.862 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.315 4.315 13 C 0.006 3.994 14 N -0.251 5.251 15 C 0.298 3.702 16 O -0.379 6.379 17 C 0.302 3.698 18 O -0.415 6.415 19 N -0.332 5.332 20 C 0.000 4.000 21 C -0.117 4.117 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.155 4.155 26 N -0.173 5.173 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.225 0.775 31 H 0.196 0.804 32 H 0.266 0.734 33 H 0.260 0.740 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.380 -22.222 -0.528 29.490 hybrid contribution -0.147 -2.001 0.337 2.034 sum 19.232 -24.223 -0.190 30.930 Atomic orbital electron populations 1.70917 1.07385 1.30256 1.47296 1.27236 0.96458 1.06008 0.92094 0.82853 0.73789 0.71079 0.78062 1.19219 1.20777 1.20059 1.22305 0.94658 0.92182 1.56902 0.93765 1.19480 0.86366 0.82661 0.97656 1.48638 1.23722 1.20230 1.19495 1.23270 1.00523 0.88439 0.96598 1.21777 1.01994 1.06713 1.01052 1.19347 0.91502 0.93627 0.94906 1.42139 1.28297 1.24361 1.30308 1.20397 0.84422 0.80466 0.84890 1.90681 1.62290 1.59818 1.25147 1.19430 0.83342 0.82644 0.84416 1.90802 1.63333 1.61142 1.26236 1.45728 1.32577 1.23229 1.31686 1.21870 0.86776 0.95196 0.96121 1.22034 0.99477 0.94824 0.95414 1.22542 0.98251 0.99615 0.96081 1.22510 0.97182 0.99501 0.97065 1.22384 0.97272 1.02116 0.94666 1.22131 0.93928 1.01133 0.98269 1.77344 1.04641 1.17935 1.17366 0.92855 0.92327 0.96397 0.77527 0.80370 0.73375 0.74010 0.90589 0.90957 0.89089 0.91983 0.90920 0.90946 0.91509 0.90944 0.91850 0.90448 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.65 21.45 0.29 -53.40 16 2 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 3 Si 1.12 50.06 29.90 68.60 2.05 52.11 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.62 -35.41 9.24 25.60 0.24 -35.17 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.10 5.57 85.64 0.48 13.58 16 10 N -0.34 -15.69 3.67 -351.84 -1.29 -16.99 16 11 C 0.06 2.24 11.43 83.51 0.95 3.19 16 12 C -0.28 -10.45 9.60 22.11 0.21 -10.23 16 13 C 0.26 10.36 8.10 133.40 1.08 11.45 16 14 N -0.60 -19.50 5.43 -308.90 -1.68 -21.18 16 15 C 0.52 14.42 7.85 87.24 0.69 15.11 16 16 O -0.51 -14.81 13.60 -3.35 -0.05 -14.86 16 17 C 0.52 12.21 7.89 87.24 0.69 12.90 16 18 O -0.54 -15.04 16.48 -3.28 -0.05 -15.09 16 19 N -0.68 -10.94 5.39 -464.53 -2.50 -13.44 16 20 C 0.12 1.55 4.73 86.38 0.41 1.95 16 21 C -0.10 -0.83 2.97 -10.07 -0.03 -0.86 16 22 C -0.13 -1.15 6.05 31.70 0.19 -0.96 16 23 C -0.13 -0.99 6.91 31.91 0.22 -0.77 16 24 C -0.13 -0.95 6.83 31.67 0.22 -0.74 16 25 C -0.12 -0.85 6.46 31.32 0.20 -0.65 16 26 N -0.34 -16.11 12.42 -54.54 -0.68 -16.79 16 27 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 28 H 0.06 2.82 7.94 -2.39 -0.02 2.80 16 29 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 30 H 0.21 5.86 8.06 -2.91 -0.02 5.84 16 31 H 0.18 5.92 5.91 -2.91 -0.02 5.90 16 32 H 0.43 13.01 8.29 -92.71 -0.77 12.24 16 33 H 0.42 5.62 7.80 -92.70 -0.72 4.90 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.02 8.02 -2.39 -0.02 1.00 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.68 7.77 -2.39 -0.02 0.67 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 0.52 7.67 -2.38 -0.02 0.50 16 Total: -1.00 -70.01 370.59 1.75 -68.26 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.35 Total: 23.13 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.01 Total: 8.24 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.86 Total: -121.80 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.10 Total: -29.95 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -70.01 1.75 -68.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267922833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.183 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds